ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 176 6e-41
2dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic D... 176 6e-41
3dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic D... 176 6e-41
4dbj|AK104849.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 6e-41
5dbj|AK066970.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 6e-41
6dbj|AK073517.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
7ref|XM_467767.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
9dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
10dbj|AK103517.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
11gb|AY108785.1| Zea mays PCO127498 mRNA sequence 50 0.009
12gb|BT016250.1| Zea mays clone Contig83 mRNA sequence 46 0.15
13dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 44 0.58
14gb|AY107779.1| Zea mays PCO127499 mRNA sequence 44 0.58
15emb|AL354891.11| Human DNA sequence from clone RP11-44I7 on chro... 42 2.3
16emb|BX511029.9| Zebrafish DNA sequence from clone DKEY-18H21 in ... 42 2.3
17emb|AJ634142.1| Lychnis chalcedonica partial rpd2 gene for RNA p... 42 2.3
18gb|BC063841.1| Homo sapiens ubiquilin 4, mRNA (cDNA clone MGC:74... 40 9.0
19gb|BC006410.1| Homo sapiens ubiquilin 4, mRNA (cDNA clone IMAGE:... 40 9.0
20emb|Z98036.1|HS187N21 Human DNA sequence from clone RP1-187N21 o... 40 9.0
21emb|AL355388.30| Human DNA sequence from clone RP11-336K24 on ch... 40 9.0
22gb|AC116158.5| Homo sapiens chromosome , clone RP11-102L12, comp... 40 9.0
23gb|AC021059.25| Homo sapiens 3 BAC RP11-464E15 (Roswell Park Can... 40 9.0
24gb|AC182490.3| Pan troglodytes BAC clone CH251-430P12 from chrom... 40 9.0
25emb|CR625574.1| full-length cDNA clone CS0DD008YI17 of Neuroblas... 40 9.0
26emb|CR617278.1| full-length cDNA clone CS0DL008YG20 of B cells (... 40 9.0
27gb|AC120782.25| Pan troglodytes clone rp43-45g12, complete sequence 40 9.0
28gb|AC109631.4| Homo sapiens chromosome , clone RP11-9J12, comple... 40 9.0
29gb|AC155303.2| Mus musculus BAC clone RP24-212A21 from chromosom... 40 9.0
30gb|AF188240.1|AF188240 Homo sapiens A1U mRNA, complete cds 40 9.0
31ref|NM_020131.3| Homo sapiens ubiquilin 4 (UBQLN4), mRNA 40 9.0
32gb|AC154185.1| Mus musculus BAC clone RP24-67L15 from chromosome... 40 9.0
33dbj|AK098368.1| Homo sapiens cDNA FLJ25502 fis, clone CBR04190, ... 40 9.0
34gb|AF113544.1|AF113544 Homo sapiens HRIHFB2157-like protein mRNA... 40 9.0
35gb|BC018403.2| Homo sapiens ubiquilin 4, mRNA (cDNA clone MGC:16... 40 9.0
36gb|AC136517.3| Mus musculus BAC clone RP23-259O15 from 1, comple... 40 9.0
37dbj|AB209566.1| Homo sapiens mRNA for ataxin-1 ubiquitin-like in... 40 9.0
38gb|L25107.1|HUMLISA Human LIS mRNA 40 9.0 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  176 bits (89), Expect = 6e-41
 Identities = 188/221 (85%)
 Strand = Plus / Plus

                                                                           
Query: 386     gacggtagggatcctccatacgagcatcacgagcagcaacgtctcctggacggtagagat 445
               |||||||  ||||||||| ||||||| ||||   || ||  ||||||||||| || ||||
Sbjct: 6607667 gacggtacagatcctccacacgagcaccacggataggaatttctcctggacgatacagat 6607726

                                                                           
Query: 446     cctccatacgagcaccacgagcagcaatctctcctggacggtagagatcctccacacgag 505
               ||||||| |||||||   ||||||||| ||||| |||||| ||||| |||||||||||||
Sbjct: 6607727 cctccatgcgagcactgtgagcagcaacctctcgtggacgatagagctcctccacacgag 6607786

                                                                           
Query: 506     caccacgagaagcaatctctcctgggcggtagagatcctccacacgagcaccgtgagaag 565
                |||||||| | ||||||||||||| |||||||| ||||||||||||| |||| ||| ||
Sbjct: 6607787 aaccacgagcaacaatctctcctggacggtagagctcctccacacgagaaccgcgagcag 6607846

                                                        
Query: 566     caatctctcctggacggtagtgatcctccacacgagtacca 606
               ||| |||||||||||||||| | |||||||| |||| ||||
Sbjct: 6607847 caagctctcctggacggtagagctcctccacccgagcacca 6607887



 Score =  155 bits (78), Expect = 2e-34
 Identities = 198/238 (83%)
 Strand = Plus / Plus

                                                                           
Query: 395     gatcctccatacgagcatcacgagcagcaacgtctcctggacggtagagatcctccatac 454
               ||||||| | |||| || ||||||||| ||  ||||| |||||||| |||||||||| ||
Sbjct: 6607628 gatcctctacacgaacagcacgagcagaaatttctccaggacggtacagatcctccacac 6607687

                                                                           
Query: 455     gagcaccacgagcagcaatctctcctggacggtagagatcctccacacgagcaccacgag 514
               ||||||||||   || ||| ||||||||||| || ||||||||||  |||||||   |||
Sbjct: 6607688 gagcaccacggataggaatttctcctggacgatacagatcctccatgcgagcactgtgag 6607747

                                                                           
Query: 515     aagcaatctctcctgggcggtagagatcctccacacgagcaccgtgagaagcaatctctc 574
                ||||| ||||| ||| || ||||| ||||||||||||| |||  ||| | |||||||||
Sbjct: 6607748 cagcaacctctcgtggacgatagagctcctccacacgagaaccacgagcaacaatctctc 6607807

                                                                         
Query: 575     ctggacggtagtgatcctccacacgagtaccacggacagcaagctctcctgggcggta 632
               ||||||||||| | ||||||||||||| ||| ||  |||||||||||||||| |||||
Sbjct: 6607808 ctggacggtagagctcctccacacgagaaccgcgagcagcaagctctcctggacggta 6607865



 Score =  139 bits (70), Expect = 1e-29
 Identities = 166/198 (83%)
 Strand = Plus / Plus

                                                                           
Query: 435     acggtagagatcctccatacgagcaccacgagcagcaatctctcctggacggtagagatc 494
               |||||| |||||||| | |||| || ||||||||| ||| ||||| |||||||| |||||
Sbjct: 6607620 acggtaaagatcctctacacgaacagcacgagcagaaatttctccaggacggtacagatc 6607679

                                                                           
Query: 495     ctccacacgagcaccacgagaagcaatctctcctgggcggtagagatcctccacacgagc 554
               ||||||||||||||||||   || ||| |||||||| || || ||||||||||  |||||
Sbjct: 6607680 ctccacacgagcaccacggataggaatttctcctggacgatacagatcctccatgcgagc 6607739

                                                                           
Query: 555     accgtgagaagcaatctctcctggacggtagtgatcctccacacgagtaccacggacagc 614
               || ||||| ||||| ||||| |||||| ||| | ||||||||||||| ||||||  || |
Sbjct: 6607740 actgtgagcagcaacctctcgtggacgatagagctcctccacacgagaaccacgagcaac 6607799

                                 
Query: 615     aagctctcctgggcggta 632
               || ||||||||| |||||
Sbjct: 6607800 aatctctcctggacggta 6607817



 Score =  129 bits (65), Expect = 1e-26
 Identities = 110/125 (88%)
 Strand = Plus / Plus

                                                                           
Query: 397     tcctccatacgagcatcacgagcagcaacgtctcctggacggtagagatcctccatacga 456
               ||||||| ||||| | |||||||| |||  ||||||||||||||||| ||||||| ||||
Sbjct: 6607774 tcctccacacgagaaccacgagcaacaatctctcctggacggtagagctcctccacacga 6607833

                                                                           
Query: 457     gcaccacgagcagcaatctctcctggacggtagagatcctccacacgagcaccacgagaa 516
               | ||| |||||||||| |||||||||||||||||| |||||||| ||||||||| | |||
Sbjct: 6607834 gaaccgcgagcagcaagctctcctggacggtagagctcctccacccgagcaccaagtgaa 6607893

                    
Query: 517     gcaat 521
               |||||
Sbjct: 6607894 gcaat 6607898



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 87/103 (84%)
 Strand = Plus / Plus

                                                                           
Query: 360     agaaccacgagcatctagccctccttgacggtagggatcctccatacgagcatcacgagc 419
               ||||||||||||| | | | ||||| |||||||| | ||||||| ||||| | | |||||
Sbjct: 6607785 agaaccacgagcaacaatctctcctggacggtagagctcctccacacgagaaccgcgagc 6607844

                                                          
Query: 420     agcaacgtctcctggacggtagagatcctccatacgagcacca 462
               |||||  ||||||||||||||||| |||||||  |||||||||
Sbjct: 6607845 agcaagctctcctggacggtagagctcctccacccgagcacca 6607887



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 97/120 (80%)
 Strand = Plus / Plus

                                                                           
Query: 532     cggtagagatcctccacacgagcaccgtgagaagcaatctctcctggacggtagtgatcc 591
               ||||| |||||||| |||||| || |  ||| || ||| ||||| ||||||||  |||||
Sbjct: 6607621 cggtaaagatcctctacacgaacagcacgagcagaaatttctccaggacggtacagatcc 6607680

                                                                           
Query: 592     tccacacgagtaccacggacagcaagctctcctgggcggtaaggatcctncaggcgagca 651
               |||||||||| |||||||| || ||  |||||||| || ||  |||||| || |||||||
Sbjct: 6607681 tccacacgagcaccacggataggaatttctcctggacgatacagatcctccatgcgagca 6607740



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                                
Query: 172     aatcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccg 220
               ||||||||||| |||||||| |||| |||||||||||| || |||||||
Sbjct: 6607432 aatcatcgatacgctggcgcgccaggaaaggaatagagagacgaaaccg 6607480
to top
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0425F05
          Length = 162858

 Score =  176 bits (89), Expect = 6e-41
 Identities = 188/221 (85%)
 Strand = Plus / Plus

                                                                         
Query: 386   gacggtagggatcctccatacgagcatcacgagcagcaacgtctcctggacggtagagat 445
             |||||||  ||||||||| ||||||| ||||   || ||  ||||||||||| || ||||
Sbjct: 41793 gacggtacagatcctccacacgagcaccacggataggaatttctcctggacgatacagat 41852

                                                                         
Query: 446   cctccatacgagcaccacgagcagcaatctctcctggacggtagagatcctccacacgag 505
             ||||||| |||||||   ||||||||| ||||| |||||| ||||| |||||||||||||
Sbjct: 41853 cctccatgcgagcactgtgagcagcaacctctcgtggacgatagagctcctccacacgag 41912

                                                                         
Query: 506   caccacgagaagcaatctctcctgggcggtagagatcctccacacgagcaccgtgagaag 565
              |||||||| | ||||||||||||| |||||||| ||||||||||||| |||| ||| ||
Sbjct: 41913 aaccacgagcaacaatctctcctggacggtagagctcctccacacgagaaccgcgagcag 41972

                                                      
Query: 566   caatctctcctggacggtagtgatcctccacacgagtacca 606
             ||| |||||||||||||||| | |||||||| |||| ||||
Sbjct: 41973 caagctctcctggacggtagagctcctccacccgagcacca 42013



 Score =  155 bits (78), Expect = 2e-34
 Identities = 198/238 (83%)
 Strand = Plus / Plus

                                                                         
Query: 395   gatcctccatacgagcatcacgagcagcaacgtctcctggacggtagagatcctccatac 454
             ||||||| | |||| || ||||||||| ||  ||||| |||||||| |||||||||| ||
Sbjct: 41754 gatcctctacacgaacagcacgagcagaaatttctccaggacggtacagatcctccacac 41813

                                                                         
Query: 455   gagcaccacgagcagcaatctctcctggacggtagagatcctccacacgagcaccacgag 514
             ||||||||||   || ||| ||||||||||| || ||||||||||  |||||||   |||
Sbjct: 41814 gagcaccacggataggaatttctcctggacgatacagatcctccatgcgagcactgtgag 41873

                                                                         
Query: 515   aagcaatctctcctgggcggtagagatcctccacacgagcaccgtgagaagcaatctctc 574
              ||||| ||||| ||| || ||||| ||||||||||||| |||  ||| | |||||||||
Sbjct: 41874 cagcaacctctcgtggacgatagagctcctccacacgagaaccacgagcaacaatctctc 41933

                                                                       
Query: 575   ctggacggtagtgatcctccacacgagtaccacggacagcaagctctcctgggcggta 632
             ||||||||||| | ||||||||||||| ||| ||  |||||||||||||||| |||||
Sbjct: 41934 ctggacggtagagctcctccacacgagaaccgcgagcagcaagctctcctggacggta 41991



 Score =  139 bits (70), Expect = 1e-29
 Identities = 166/198 (83%)
 Strand = Plus / Plus

                                                                         
Query: 435   acggtagagatcctccatacgagcaccacgagcagcaatctctcctggacggtagagatc 494
             |||||| |||||||| | |||| || ||||||||| ||| ||||| |||||||| |||||
Sbjct: 41746 acggtaaagatcctctacacgaacagcacgagcagaaatttctccaggacggtacagatc 41805

                                                                         
Query: 495   ctccacacgagcaccacgagaagcaatctctcctgggcggtagagatcctccacacgagc 554
             ||||||||||||||||||   || ||| |||||||| || || ||||||||||  |||||
Sbjct: 41806 ctccacacgagcaccacggataggaatttctcctggacgatacagatcctccatgcgagc 41865

                                                                         
Query: 555   accgtgagaagcaatctctcctggacggtagtgatcctccacacgagtaccacggacagc 614
             || ||||| ||||| ||||| |||||| ||| | ||||||||||||| ||||||  || |
Sbjct: 41866 actgtgagcagcaacctctcgtggacgatagagctcctccacacgagaaccacgagcaac 41925

                               
Query: 615   aagctctcctgggcggta 632
             || ||||||||| |||||
Sbjct: 41926 aatctctcctggacggta 41943



 Score =  129 bits (65), Expect = 1e-26
 Identities = 110/125 (88%)
 Strand = Plus / Plus

                                                                         
Query: 397   tcctccatacgagcatcacgagcagcaacgtctcctggacggtagagatcctccatacga 456
             ||||||| ||||| | |||||||| |||  ||||||||||||||||| ||||||| ||||
Sbjct: 41900 tcctccacacgagaaccacgagcaacaatctctcctggacggtagagctcctccacacga 41959

                                                                         
Query: 457   gcaccacgagcagcaatctctcctggacggtagagatcctccacacgagcaccacgagaa 516
             | ||| |||||||||| |||||||||||||||||| |||||||| ||||||||| | |||
Sbjct: 41960 gaaccgcgagcagcaagctctcctggacggtagagctcctccacccgagcaccaagtgaa 42019

                  
Query: 517   gcaat 521
             |||||
Sbjct: 42020 gcaat 42024



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 87/103 (84%)
 Strand = Plus / Plus

                                                                         
Query: 360   agaaccacgagcatctagccctccttgacggtagggatcctccatacgagcatcacgagc 419
             ||||||||||||| | | | ||||| |||||||| | ||||||| ||||| | | |||||
Sbjct: 41911 agaaccacgagcaacaatctctcctggacggtagagctcctccacacgagaaccgcgagc 41970

                                                        
Query: 420   agcaacgtctcctggacggtagagatcctccatacgagcacca 462
             |||||  ||||||||||||||||| |||||||  |||||||||
Sbjct: 41971 agcaagctctcctggacggtagagctcctccacccgagcacca 42013



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 97/120 (80%)
 Strand = Plus / Plus

                                                                         
Query: 532   cggtagagatcctccacacgagcaccgtgagaagcaatctctcctggacggtagtgatcc 591
             ||||| |||||||| |||||| || |  ||| || ||| ||||| ||||||||  |||||
Sbjct: 41747 cggtaaagatcctctacacgaacagcacgagcagaaatttctccaggacggtacagatcc 41806

                                                                         
Query: 592   tccacacgagtaccacggacagcaagctctcctgggcggtaaggatcctncaggcgagca 651
             |||||||||| |||||||| || ||  |||||||| || ||  |||||| || |||||||
Sbjct: 41807 tccacacgagcaccacggataggaatttctcctggacgatacagatcctccatgcgagca 41866



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                              
Query: 172   aatcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccg 220
             ||||||||||| |||||||| |||| |||||||||||| || |||||||
Sbjct: 41558 aatcatcgatacgctggcgcgccaggaaaggaatagagagacgaaaccg 41606
to top
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0690H04
          Length = 137319

 Score =  176 bits (89), Expect = 6e-41
 Identities = 188/221 (85%)
 Strand = Plus / Plus

                                                                          
Query: 386    gacggtagggatcctccatacgagcatcacgagcagcaacgtctcctggacggtagagat 445
              |||||||  ||||||||| ||||||| ||||   || ||  ||||||||||| || ||||
Sbjct: 124043 gacggtacagatcctccacacgagcaccacggataggaatttctcctggacgatacagat 124102

                                                                          
Query: 446    cctccatacgagcaccacgagcagcaatctctcctggacggtagagatcctccacacgag 505
              ||||||| |||||||   ||||||||| ||||| |||||| ||||| |||||||||||||
Sbjct: 124103 cctccatgcgagcactgtgagcagcaacctctcgtggacgatagagctcctccacacgag 124162

                                                                          
Query: 506    caccacgagaagcaatctctcctgggcggtagagatcctccacacgagcaccgtgagaag 565
               |||||||| | ||||||||||||| |||||||| ||||||||||||| |||| ||| ||
Sbjct: 124163 aaccacgagcaacaatctctcctggacggtagagctcctccacacgagaaccgcgagcag 124222

                                                       
Query: 566    caatctctcctggacggtagtgatcctccacacgagtacca 606
              ||| |||||||||||||||| | |||||||| |||| ||||
Sbjct: 124223 caagctctcctggacggtagagctcctccacccgagcacca 124263



 Score =  155 bits (78), Expect = 2e-34
 Identities = 198/238 (83%)
 Strand = Plus / Plus

                                                                          
Query: 395    gatcctccatacgagcatcacgagcagcaacgtctcctggacggtagagatcctccatac 454
              ||||||| | |||| || ||||||||| ||  ||||| |||||||| |||||||||| ||
Sbjct: 124004 gatcctctacacgaacagcacgagcagaaatttctccaggacggtacagatcctccacac 124063

                                                                          
Query: 455    gagcaccacgagcagcaatctctcctggacggtagagatcctccacacgagcaccacgag 514
              ||||||||||   || ||| ||||||||||| || ||||||||||  |||||||   |||
Sbjct: 124064 gagcaccacggataggaatttctcctggacgatacagatcctccatgcgagcactgtgag 124123

                                                                          
Query: 515    aagcaatctctcctgggcggtagagatcctccacacgagcaccgtgagaagcaatctctc 574
               ||||| ||||| ||| || ||||| ||||||||||||| |||  ||| | |||||||||
Sbjct: 124124 cagcaacctctcgtggacgatagagctcctccacacgagaaccacgagcaacaatctctc 124183

                                                                        
Query: 575    ctggacggtagtgatcctccacacgagtaccacggacagcaagctctcctgggcggta 632
              ||||||||||| | ||||||||||||| ||| ||  |||||||||||||||| |||||
Sbjct: 124184 ctggacggtagagctcctccacacgagaaccgcgagcagcaagctctcctggacggta 124241



 Score =  139 bits (70), Expect = 1e-29
 Identities = 166/198 (83%)
 Strand = Plus / Plus

                                                                          
Query: 435    acggtagagatcctccatacgagcaccacgagcagcaatctctcctggacggtagagatc 494
              |||||| |||||||| | |||| || ||||||||| ||| ||||| |||||||| |||||
Sbjct: 123996 acggtaaagatcctctacacgaacagcacgagcagaaatttctccaggacggtacagatc 124055

                                                                          
Query: 495    ctccacacgagcaccacgagaagcaatctctcctgggcggtagagatcctccacacgagc 554
              ||||||||||||||||||   || ||| |||||||| || || ||||||||||  |||||
Sbjct: 124056 ctccacacgagcaccacggataggaatttctcctggacgatacagatcctccatgcgagc 124115

                                                                          
Query: 555    accgtgagaagcaatctctcctggacggtagtgatcctccacacgagtaccacggacagc 614
              || ||||| ||||| ||||| |||||| ||| | ||||||||||||| ||||||  || |
Sbjct: 124116 actgtgagcagcaacctctcgtggacgatagagctcctccacacgagaaccacgagcaac 124175

                                
Query: 615    aagctctcctgggcggta 632
              || ||||||||| |||||
Sbjct: 124176 aatctctcctggacggta 124193



 Score =  129 bits (65), Expect = 1e-26
 Identities = 110/125 (88%)
 Strand = Plus / Plus

                                                                          
Query: 397    tcctccatacgagcatcacgagcagcaacgtctcctggacggtagagatcctccatacga 456
              ||||||| ||||| | |||||||| |||  ||||||||||||||||| ||||||| ||||
Sbjct: 124150 tcctccacacgagaaccacgagcaacaatctctcctggacggtagagctcctccacacga 124209

                                                                          
Query: 457    gcaccacgagcagcaatctctcctggacggtagagatcctccacacgagcaccacgagaa 516
              | ||| |||||||||| |||||||||||||||||| |||||||| ||||||||| | |||
Sbjct: 124210 gaaccgcgagcagcaagctctcctggacggtagagctcctccacccgagcaccaagtgaa 124269

                   
Query: 517    gcaat 521
              |||||
Sbjct: 124270 gcaat 124274



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 87/103 (84%)
 Strand = Plus / Plus

                                                                          
Query: 360    agaaccacgagcatctagccctccttgacggtagggatcctccatacgagcatcacgagc 419
              ||||||||||||| | | | ||||| |||||||| | ||||||| ||||| | | |||||
Sbjct: 124161 agaaccacgagcaacaatctctcctggacggtagagctcctccacacgagaaccgcgagc 124220

                                                         
Query: 420    agcaacgtctcctggacggtagagatcctccatacgagcacca 462
              |||||  ||||||||||||||||| |||||||  |||||||||
Sbjct: 124221 agcaagctctcctggacggtagagctcctccacccgagcacca 124263



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 97/120 (80%)
 Strand = Plus / Plus

                                                                          
Query: 532    cggtagagatcctccacacgagcaccgtgagaagcaatctctcctggacggtagtgatcc 591
              ||||| |||||||| |||||| || |  ||| || ||| ||||| ||||||||  |||||
Sbjct: 123997 cggtaaagatcctctacacgaacagcacgagcagaaatttctccaggacggtacagatcc 124056

                                                                          
Query: 592    tccacacgagtaccacggacagcaagctctcctgggcggtaaggatcctncaggcgagca 651
              |||||||||| |||||||| || ||  |||||||| || ||  |||||| || |||||||
Sbjct: 124057 tccacacgagcaccacggataggaatttctcctggacgatacagatcctccatgcgagca 124116



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                               
Query: 172    aatcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccg 220
              ||||||||||| |||||||| |||| |||||||||||| || |||||||
Sbjct: 123808 aatcatcgatacgctggcgcgccaggaaaggaatagagagacgaaaccg 123856
to top
>dbj|AK104849.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-A01, full
           insert sequence
          Length = 1063

 Score =  176 bits (89), Expect = 6e-41
 Identities = 188/221 (85%)
 Strand = Plus / Minus

                                                                       
Query: 386 gacggtagggatcctccatacgagcatcacgagcagcaacgtctcctggacggtagagat 445
           |||||||  ||||||||| ||||||| ||||   || ||  ||||||||||| || ||||
Sbjct: 581 gacggtacagatcctccacacgagcaccacggataggaatttctcctggacgatacagat 522

                                                                       
Query: 446 cctccatacgagcaccacgagcagcaatctctcctggacggtagagatcctccacacgag 505
           ||||||| |||||||   ||||||||| ||||| |||||| ||||| |||||||||||||
Sbjct: 521 cctccatgcgagcactgtgagcagcaacctctcgtggacgatagagctcctccacacgag 462

                                                                       
Query: 506 caccacgagaagcaatctctcctgggcggtagagatcctccacacgagcaccgtgagaag 565
            |||||||| | ||||||||||||| |||||||| ||||||||||||| |||| ||| ||
Sbjct: 461 aaccacgagcaacaatctctcctggacggtagagctcctccacacgagaaccgcgagcag 402

                                                    
Query: 566 caatctctcctggacggtagtgatcctccacacgagtacca 606
           ||| |||||||||||||||| | |||||||| |||| ||||
Sbjct: 401 caagctctcctggacggtagagctcctccacccgagcacca 361



 Score =  155 bits (78), Expect = 2e-34
 Identities = 198/238 (83%)
 Strand = Plus / Minus

                                                                       
Query: 395 gatcctccatacgagcatcacgagcagcaacgtctcctggacggtagagatcctccatac 454
           ||||||| | |||| || ||||||||| ||  ||||| |||||||| |||||||||| ||
Sbjct: 620 gatcctctacacgaacagcacgagcagaaatttctccaggacggtacagatcctccacac 561

                                                                       
Query: 455 gagcaccacgagcagcaatctctcctggacggtagagatcctccacacgagcaccacgag 514
           ||||||||||   || ||| ||||||||||| || ||||||||||  |||||||   |||
Sbjct: 560 gagcaccacggataggaatttctcctggacgatacagatcctccatgcgagcactgtgag 501

                                                                       
Query: 515 aagcaatctctcctgggcggtagagatcctccacacgagcaccgtgagaagcaatctctc 574
            ||||| ||||| ||| || ||||| ||||||||||||| |||  ||| | |||||||||
Sbjct: 500 cagcaacctctcgtggacgatagagctcctccacacgagaaccacgagcaacaatctctc 441

                                                                     
Query: 575 ctggacggtagtgatcctccacacgagtaccacggacagcaagctctcctgggcggta 632
           ||||||||||| | ||||||||||||| ||| ||  |||||||||||||||| |||||
Sbjct: 440 ctggacggtagagctcctccacacgagaaccgcgagcagcaagctctcctggacggta 383



 Score =  139 bits (70), Expect = 1e-29
 Identities = 166/198 (83%)
 Strand = Plus / Minus

                                                                       
Query: 435 acggtagagatcctccatacgagcaccacgagcagcaatctctcctggacggtagagatc 494
           |||||| |||||||| | |||| || ||||||||| ||| ||||| |||||||| |||||
Sbjct: 628 acggtaaagatcctctacacgaacagcacgagcagaaatttctccaggacggtacagatc 569

                                                                       
Query: 495 ctccacacgagcaccacgagaagcaatctctcctgggcggtagagatcctccacacgagc 554
           ||||||||||||||||||   || ||| |||||||| || || ||||||||||  |||||
Sbjct: 568 ctccacacgagcaccacggataggaatttctcctggacgatacagatcctccatgcgagc 509

                                                                       
Query: 555 accgtgagaagcaatctctcctggacggtagtgatcctccacacgagtaccacggacagc 614
           || ||||| ||||| ||||| |||||| ||| | ||||||||||||| ||||||  || |
Sbjct: 508 actgtgagcagcaacctctcgtggacgatagagctcctccacacgagaaccacgagcaac 449

                             
Query: 615 aagctctcctgggcggta 632
           || ||||||||| |||||
Sbjct: 448 aatctctcctggacggta 431



 Score =  129 bits (65), Expect = 1e-26
 Identities = 110/125 (88%)
 Strand = Plus / Minus

                                                                       
Query: 397 tcctccatacgagcatcacgagcagcaacgtctcctggacggtagagatcctccatacga 456
           ||||||| ||||| | |||||||| |||  ||||||||||||||||| ||||||| ||||
Sbjct: 474 tcctccacacgagaaccacgagcaacaatctctcctggacggtagagctcctccacacga 415

                                                                       
Query: 457 gcaccacgagcagcaatctctcctggacggtagagatcctccacacgagcaccacgagaa 516
           | ||| |||||||||| |||||||||||||||||| |||||||| ||||||||| | |||
Sbjct: 414 gaaccgcgagcagcaagctctcctggacggtagagctcctccacccgagcaccaagtgaa 355

                
Query: 517 gcaat 521
           |||||
Sbjct: 354 gcaat 350



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 87/103 (84%)
 Strand = Plus / Minus

                                                                       
Query: 360 agaaccacgagcatctagccctccttgacggtagggatcctccatacgagcatcacgagc 419
           ||||||||||||| | | | ||||| |||||||| | ||||||| ||||| | | |||||
Sbjct: 463 agaaccacgagcaacaatctctcctggacggtagagctcctccacacgagaaccgcgagc 404

                                                      
Query: 420 agcaacgtctcctggacggtagagatcctccatacgagcacca 462
           |||||  ||||||||||||||||| |||||||  |||||||||
Sbjct: 403 agcaagctctcctggacggtagagctcctccacccgagcacca 361



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                            
Query: 172 aatcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccg 220
           ||||||||||| |||||||| |||| |||||||||||| || |||||||
Sbjct: 816 aatcatcgatacgctggcgcgccaggaaaggaatagagagacgaaaccg 768



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 97/120 (80%)
 Strand = Plus / Minus

                                                                       
Query: 532 cggtagagatcctccacacgagcaccgtgagaagcaatctctcctggacggtagtgatcc 591
           ||||| |||||||| |||||| || |  ||| || ||| ||||| ||||||||  |||||
Sbjct: 627 cggtaaagatcctctacacgaacagcacgagcagaaatttctccaggacggtacagatcc 568

                                                                       
Query: 592 tccacacgagtaccacggacagcaagctctcctgggcggtaaggatcctncaggcgagca 651
           |||||||||| |||||||| || ||  |||||||| || ||  |||||| || |||||||
Sbjct: 567 tccacacgagcaccacggataggaatttctcctggacgatacagatcctccatgcgagca 508
to top
>dbj|AK066970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089B21, full
            insert sequence
          Length = 2977

 Score =  176 bits (89), Expect = 6e-41
 Identities = 188/221 (85%)
 Strand = Plus / Minus

                                                                        
Query: 386  gacggtagggatcctccatacgagcatcacgagcagcaacgtctcctggacggtagagat 445
            |||||||  ||||||||| ||||||| ||||   || ||  ||||||||||| || ||||
Sbjct: 2091 gacggtacagatcctccacacgagcaccacggataggaatttctcctggacgatacagat 2032

                                                                        
Query: 446  cctccatacgagcaccacgagcagcaatctctcctggacggtagagatcctccacacgag 505
            ||||||| |||||||   ||||||||| ||||| |||||| ||||| |||||||||||||
Sbjct: 2031 cctccatgcgagcactgtgagcagcaacctctcgtggacgatagagctcctccacacgag 1972

                                                                        
Query: 506  caccacgagaagcaatctctcctgggcggtagagatcctccacacgagcaccgtgagaag 565
             |||||||| | ||||||||||||| |||||||| ||||||||||||| |||| ||| ||
Sbjct: 1971 aaccacgagcaacaatctctcctggacggtagagctcctccacacgagaaccgcgagcag 1912

                                                     
Query: 566  caatctctcctggacggtagtgatcctccacacgagtacca 606
            ||| |||||||||||||||| | |||||||| |||| ||||
Sbjct: 1911 caagctctcctggacggtagagctcctccacccgagcacca 1871



 Score =  155 bits (78), Expect = 2e-34
 Identities = 198/238 (83%)
 Strand = Plus / Minus

                                                                        
Query: 395  gatcctccatacgagcatcacgagcagcaacgtctcctggacggtagagatcctccatac 454
            ||||||| | |||| || ||||||||| ||  ||||| |||||||| |||||||||| ||
Sbjct: 2130 gatcctctacacgaacagcacgagcagaaatttctccaggacggtacagatcctccacac 2071

                                                                        
Query: 455  gagcaccacgagcagcaatctctcctggacggtagagatcctccacacgagcaccacgag 514
            ||||||||||   || ||| ||||||||||| || ||||||||||  |||||||   |||
Sbjct: 2070 gagcaccacggataggaatttctcctggacgatacagatcctccatgcgagcactgtgag 2011

                                                                        
Query: 515  aagcaatctctcctgggcggtagagatcctccacacgagcaccgtgagaagcaatctctc 574
             ||||| ||||| ||| || ||||| ||||||||||||| |||  ||| | |||||||||
Sbjct: 2010 cagcaacctctcgtggacgatagagctcctccacacgagaaccacgagcaacaatctctc 1951

                                                                      
Query: 575  ctggacggtagtgatcctccacacgagtaccacggacagcaagctctcctgggcggta 632
            ||||||||||| | ||||||||||||| ||| ||  |||||||||||||||| |||||
Sbjct: 1950 ctggacggtagagctcctccacacgagaaccgcgagcagcaagctctcctggacggta 1893



 Score =  139 bits (70), Expect = 1e-29
 Identities = 166/198 (83%)
 Strand = Plus / Minus

                                                                        
Query: 435  acggtagagatcctccatacgagcaccacgagcagcaatctctcctggacggtagagatc 494
            |||||| |||||||| | |||| || ||||||||| ||| ||||| |||||||| |||||
Sbjct: 2138 acggtaaagatcctctacacgaacagcacgagcagaaatttctccaggacggtacagatc 2079

                                                                        
Query: 495  ctccacacgagcaccacgagaagcaatctctcctgggcggtagagatcctccacacgagc 554
            ||||||||||||||||||   || ||| |||||||| || || ||||||||||  |||||
Sbjct: 2078 ctccacacgagcaccacggataggaatttctcctggacgatacagatcctccatgcgagc 2019

                                                                        
Query: 555  accgtgagaagcaatctctcctggacggtagtgatcctccacacgagtaccacggacagc 614
            || ||||| ||||| ||||| |||||| ||| | ||||||||||||| ||||||  || |
Sbjct: 2018 actgtgagcagcaacctctcgtggacgatagagctcctccacacgagaaccacgagcaac 1959

                              
Query: 615  aagctctcctgggcggta 632
            || ||||||||| |||||
Sbjct: 1958 aatctctcctggacggta 1941



 Score =  129 bits (65), Expect = 1e-26
 Identities = 110/125 (88%)
 Strand = Plus / Minus

                                                                        
Query: 397  tcctccatacgagcatcacgagcagcaacgtctcctggacggtagagatcctccatacga 456
            ||||||| ||||| | |||||||| |||  ||||||||||||||||| ||||||| ||||
Sbjct: 1984 tcctccacacgagaaccacgagcaacaatctctcctggacggtagagctcctccacacga 1925

                                                                        
Query: 457  gcaccacgagcagcaatctctcctggacggtagagatcctccacacgagcaccacgagaa 516
            | ||| |||||||||| |||||||||||||||||| |||||||| ||||||||| | |||
Sbjct: 1924 gaaccgcgagcagcaagctctcctggacggtagagctcctccacccgagcaccaagtgaa 1865

                 
Query: 517  gcaat 521
            |||||
Sbjct: 1864 gcaat 1860



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 87/103 (84%)
 Strand = Plus / Minus

                                                                        
Query: 360  agaaccacgagcatctagccctccttgacggtagggatcctccatacgagcatcacgagc 419
            ||||||||||||| | | | ||||| |||||||| | ||||||| ||||| | | |||||
Sbjct: 1973 agaaccacgagcaacaatctctcctggacggtagagctcctccacacgagaaccgcgagc 1914

                                                       
Query: 420  agcaacgtctcctggacggtagagatcctccatacgagcacca 462
            |||||  ||||||||||||||||| |||||||  |||||||||
Sbjct: 1913 agcaagctctcctggacggtagagctcctccacccgagcacca 1871



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 172  aatcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccg 220
            ||||||||||| |||||||| |||| |||||||||||| || |||||||
Sbjct: 2326 aatcatcgatacgctggcgcgccaggaaaggaatagagagacgaaaccg 2278



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 97/120 (80%)
 Strand = Plus / Minus

                                                                        
Query: 532  cggtagagatcctccacacgagcaccgtgagaagcaatctctcctggacggtagtgatcc 591
            ||||| |||||||| |||||| || |  ||| || ||| ||||| ||||||||  |||||
Sbjct: 2137 cggtaaagatcctctacacgaacagcacgagcagaaatttctccaggacggtacagatcc 2078

                                                                        
Query: 592  tccacacgagtaccacggacagcaagctctcctgggcggtaaggatcctncaggcgagca 651
            |||||||||| |||||||| || ||  |||||||| || ||  |||||| || |||||||
Sbjct: 2077 tccacacgagcaccacggataggaatttctcctggacgatacagatcctccatgcgagca 2018
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>dbj|AK073517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040I03, full
            insert sequence
          Length = 2636

 Score =  168 bits (85), Expect = 1e-38
 Identities = 187/221 (84%)
 Strand = Plus / Minus

                                                                        
Query: 386  gacggtagggatcctccatacgagcatcacgagcagcaacgtctcctggacggtagagat 445
            |||||||  ||||||||| ||||||| ||||   || ||  ||||||||||| || ||||
Sbjct: 2139 gacggtacagatcctccacacgagcaccacggataggaatttctcctggacgatacagat 2080

                                                                        
Query: 446  cctccatacgagcaccacgagcagcaatctctcctggacggtagagatcctccacacgag 505
            ||||||| |||||||   ||||||||| ||||| |||||| ||||| |||||||||||||
Sbjct: 2079 cctccatgcgagcactgtgagcagcaacctctcgtggacgatagagctcctccacacgag 2020

                                                                        
Query: 506  caccacgagaagcaatctctcctgggcggtagagatcctccacacgagcaccgtgagaag 565
             |||||||| | ||||||||||||| |||||||| ||||||||||||| |||| ||| ||
Sbjct: 2019 aaccacgagcaacaatctctcctggacggtagagctcctccacacgagaaccgcgagcag 1960

                                                     
Query: 566  caatctctcctggacggtagtgatcctccacacgagtacca 606
            ||| ||||||||||| |||| | |||||||| |||| ||||
Sbjct: 1959 caagctctcctggactgtagagctcctccacccgagcacca 1919



 Score =  151 bits (76), Expect = 3e-33
 Identities = 193/232 (83%)
 Strand = Plus / Minus

                                                                        
Query: 395  gatcctccatacgagcatcacgagcagcaacgtctcctggacggtagagatcctccatac 454
            ||||||| | |||| || ||||||||| ||  ||||| |||||||| |||||||||| ||
Sbjct: 2178 gatcctctacacgaacagcacgagcagaaatttctccaggacggtacagatcctccacac 2119

                                                                        
Query: 455  gagcaccacgagcagcaatctctcctggacggtagagatcctccacacgagcaccacgag 514
            ||||||||||   || ||| ||||||||||| || ||||||||||  |||||||   |||
Sbjct: 2118 gagcaccacggataggaatttctcctggacgatacagatcctccatgcgagcactgtgag 2059

                                                                        
Query: 515  aagcaatctctcctgggcggtagagatcctccacacgagcaccgtgagaagcaatctctc 574
             ||||| ||||| ||| || ||||| ||||||||||||| |||  ||| | |||||||||
Sbjct: 2058 cagcaacctctcgtggacgatagagctcctccacacgagaaccacgagcaacaatctctc 1999

                                                                
Query: 575  ctggacggtagtgatcctccacacgagtaccacggacagcaagctctcctgg 626
            ||||||||||| | ||||||||||||| ||| ||  ||||||||||||||||
Sbjct: 1998 ctggacggtagagctcctccacacgagaaccgcgagcagcaagctctcctgg 1947



 Score =  139 bits (70), Expect = 1e-29
 Identities = 166/198 (83%)
 Strand = Plus / Minus

                                                                        
Query: 435  acggtagagatcctccatacgagcaccacgagcagcaatctctcctggacggtagagatc 494
            |||||| |||||||| | |||| || ||||||||| ||| ||||| |||||||| |||||
Sbjct: 2186 acggtaaagatcctctacacgaacagcacgagcagaaatttctccaggacggtacagatc 2127

                                                                        
Query: 495  ctccacacgagcaccacgagaagcaatctctcctgggcggtagagatcctccacacgagc 554
            ||||||||||||||||||   || ||| |||||||| || || ||||||||||  |||||
Sbjct: 2126 ctccacacgagcaccacggataggaatttctcctggacgatacagatcctccatgcgagc 2067

                                                                        
Query: 555  accgtgagaagcaatctctcctggacggtagtgatcctccacacgagtaccacggacagc 614
            || ||||| ||||| ||||| |||||| ||| | ||||||||||||| ||||||  || |
Sbjct: 2066 actgtgagcagcaacctctcgtggacgatagagctcctccacacgagaaccacgagcaac 2007

                              
Query: 615  aagctctcctgggcggta 632
            || ||||||||| |||||
Sbjct: 2006 aatctctcctggacggta 1989



 Score =  121 bits (61), Expect = 3e-24
 Identities = 109/125 (87%)
 Strand = Plus / Minus

                                                                        
Query: 397  tcctccatacgagcatcacgagcagcaacgtctcctggacggtagagatcctccatacga 456
            ||||||| ||||| | |||||||| |||  ||||||||||||||||| ||||||| ||||
Sbjct: 2032 tcctccacacgagaaccacgagcaacaatctctcctggacggtagagctcctccacacga 1973

                                                                        
Query: 457  gcaccacgagcagcaatctctcctggacggtagagatcctccacacgagcaccacgagaa 516
            | ||| |||||||||| ||||||||||| |||||| |||||||| ||||||||| | |||
Sbjct: 1972 gaaccgcgagcagcaagctctcctggactgtagagctcctccacccgagcaccaagtgaa 1913

                 
Query: 517  gcaat 521
            |||||
Sbjct: 1912 gcaat 1908



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 172  aatcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccg 220
            ||||||||||| |||||||| |||| |||||||||||| || |||||||
Sbjct: 2374 aatcatcgatacgctggcgcgccaggaaaggaatagagagacgaaaccg 2326



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 97/120 (80%)
 Strand = Plus / Minus

                                                                        
Query: 532  cggtagagatcctccacacgagcaccgtgagaagcaatctctcctggacggtagtgatcc 591
            ||||| |||||||| |||||| || |  ||| || ||| ||||| ||||||||  |||||
Sbjct: 2185 cggtaaagatcctctacacgaacagcacgagcagaaatttctccaggacggtacagatcc 2126

                                                                        
Query: 592  tccacacgagtaccacggacagcaagctctcctgggcggtaaggatcctncaggcgagca 651
            |||||||||| |||||||| || ||  |||||||| || ||  |||||| || |||||||
Sbjct: 2125 tccacacgagcaccacggataggaatttctcctggacgatacagatcctccatgcgagca 2066
to top
>ref|XM_467767.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2018

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                   
Query: 173  atcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccggcacacc 227
            |||||||||||||||| || |||||||||||||| || ||||| |||||| ||||
Sbjct: 1586 atcatcgatatgctggtgcaccagcaaaggaatacagggaggagaccggcgcacc 1532
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                       
Query: 173      atcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccggcacacc 227
                |||||||||||||||| || |||||||||||||| || ||||| |||||| ||||
Sbjct: 31317138 atcatcgatatgctggtgcaccagcaaaggaatacagggaggagaccggcgcacc 31317084
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>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1118_G04
          Length = 134464

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                    
Query: 173   atcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccggcacacc 227
             |||||||||||||||| || |||||||||||||| || ||||| |||||| ||||
Sbjct: 87006 atcatcgatatgctggtgcaccagcaaaggaatacagggaggagaccggcgcacc 86952
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>dbj|AK103517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131H10, full
            insert sequence
          Length = 2019

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                   
Query: 173  atcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccggcacacc 227
            |||||||||||||||| || |||||||||||||| || ||||| |||||| ||||
Sbjct: 1587 atcatcgatatgctggtgcaccagcaaaggaatacagggaggagaccggcgcacc 1533
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>gb|AY108785.1| Zea mays PCO127498 mRNA sequence
          Length = 802

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 461 cacgagcagcaatctctcctggacggtagagatcctccacacgagcaccacga 513
           ||||| ||||||| || | ||||||||| || ||||||||| |||||||||||
Sbjct: 474 cacgatcagcaatttcccgtggacggtacagctcctccacatgagcaccacga 422



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 193 ccagcaaaggaatagagtgaggaaaccggc 222
           |||| ||||||||||||||| |||||||||
Sbjct: 679 ccagaaaaggaatagagtgacgaaaccggc 650



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 268 gtttcagcataagcagggtt 287
           ||||||||||||||||||||
Sbjct: 607 gtttcagcataagcagggtt 588
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>gb|BT016250.1| Zea mays clone Contig83 mRNA sequence
          Length = 1277

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 193  ccagcaaaggaatagagtgaggaaaccggcacacc 227
            |||| ||||||||||||||| ||||||||| ||||
Sbjct: 1061 ccagaaaaggaatagagtgacgaaaccggcgcacc 1027



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 268 gtttcagcataagcagggtt 287
           ||||||||||||||||||||
Sbjct: 989 gtttcagcataagcagggtt 970
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>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 547    acacgagcaccgtgagaagcaa 568
              ||||||||||||||||||||||
Sbjct: 291566 acacgagcaccgtgagaagcaa 291545
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>gb|AY107779.1| Zea mays PCO127499 mRNA sequence
          Length = 1395

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 268  gtttcagcataagcagggttgg 289
            ||||||||||||||||||||||
Sbjct: 1076 gtttcagcataagcagggttgg 1055
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>emb|AL354891.11| Human DNA sequence from clone RP11-44I7 on chromosome 13 Contains part
             of the gene for a novel protein (ortholog of rat putative
             four repeat ion channel), complete sequence
          Length = 103706

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 83    ctgctatagttttaaccaaaa 103
             |||||||||||||||||||||
Sbjct: 63923 ctgctatagttttaaccaaaa 63943
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>emb|BX511029.9| Zebrafish DNA sequence from clone DKEY-18H21 in linkage group 3,
             complete sequence
          Length = 151867

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 158   taaatgctgagaaaaatcatc 178
             |||||||||||||||||||||
Sbjct: 54190 taaatgctgagaaaaatcatc 54210
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>emb|AJ634142.1| Lychnis chalcedonica partial rpd2 gene for RNA polymerase IV, exon
           6, clone 619
          Length = 981

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 96  aaccaaaagtaaacataagac 116
           |||||||||||||||||||||
Sbjct: 577 aaccaaaagtaaacataagac 557
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>gb|BC063841.1| Homo sapiens ubiquilin 4, mRNA (cDNA clone MGC:74959 IMAGE:6183942),
            complete cds
          Length = 3545

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   accaaaagtaaacataagac 116
            ||||||||||||||||||||
Sbjct: 2239 accaaaagtaaacataagac 2220
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>gb|BC006410.1| Homo sapiens ubiquilin 4, mRNA (cDNA clone IMAGE:2988342), complete
           cds
          Length = 1948

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 97  accaaaagtaaacataagac 116
           ||||||||||||||||||||
Sbjct: 614 accaaaagtaaacataagac 595
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>emb|Z98036.1|HS187N21 Human DNA sequence from clone RP1-187N21 on chromosome 6p21.2-21.33
             Contains part of a novel gene and the 3' end of the NUDT3
             gene for nudix (nucleoside diphosphate linked moiety
             X)-type motif 3, complete sequence
          Length = 103146

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 524   ctcctgggcggtagagatcctcca 547
             ||||| ||||||||||||||||||
Sbjct: 64355 ctccttggcggtagagatcctcca 64378
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>emb|AL355388.30| Human DNA sequence from clone RP11-336K24 on chromosome 1 Contains the 5'
              end of the RIT1 gene for Ras-like without CAAX 1, the gene
              for a novel protein (KIAA0907), the ARHGEF2 gene for
              rho/rac guanine nucleotide exchange factor (GEF) 2, four
              novel genes, the SSR2 gene for signal sequence receptor
              beta (translocon-associated protein beta), the C1orf6 gene
              for chromosome 1 open reading frame 6, the gene for
              mitogen-activated protein-binding protein-interacting
              protein (MAPBPIP), the RAB25 gene for RAB25 (member RAS
              oncogene family), the 5' end of the LMNA gene for lamin A/C
              and three CpG islands, complete sequence
          Length = 205463

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     accaaaagtaaacataagac 116
              ||||||||||||||||||||
Sbjct: 130249 accaaaagtaaacataagac 130268
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>gb|AC116158.5| Homo sapiens chromosome , clone RP11-102L12, complete sequence
          Length = 159236

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    ttttaaccaaaagtaaacat 111
             ||||||||||||||||||||
Sbjct: 99556 ttttaaccaaaagtaaacat 99575
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>gb|AC021059.25| Homo sapiens 3 BAC RP11-464E15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164076

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    accaaaagtaaacataagac 116
             ||||||||||||||||||||
Sbjct: 16754 accaaaagtaaacataagac 16773
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>gb|AC182490.3| Pan troglodytes BAC clone CH251-430P12 from chromosome 2, complete
             sequence
          Length = 158411

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 416   gagcagcaacgtctcctgga 435
             ||||||||||||||||||||
Sbjct: 75215 gagcagcaacgtctcctgga 75196
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>emb|CR625574.1| full-length cDNA clone CS0DD008YI17 of Neuroblastoma Cot
           50-normalized of Homo sapiens (human)
          Length = 1600

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 97  accaaaagtaaacataagac 116
           ||||||||||||||||||||
Sbjct: 359 accaaaagtaaacataagac 340
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>emb|CR617278.1| full-length cDNA clone CS0DL008YG20 of B cells (Ramos cell line)
           Cot 25-normalized of Homo sapiens (human)
          Length = 1456

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 97  accaaaagtaaacataagac 116
           ||||||||||||||||||||
Sbjct: 236 accaaaagtaaacataagac 217
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>gb|AC120782.25| Pan troglodytes clone rp43-45g12, complete sequence
          Length = 167170

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 416   gagcagcaacgtctcctgga 435
             ||||||||||||||||||||
Sbjct: 69263 gagcagcaacgtctcctgga 69282
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>gb|AC109631.4| Homo sapiens chromosome , clone RP11-9J12, complete sequence
          Length = 172321

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 92   ttttaaccaaaagtaaacat 111
            ||||||||||||||||||||
Sbjct: 1039 ttttaaccaaaagtaaacat 1020
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>gb|AC155303.2| Mus musculus BAC clone RP24-212A21 from chromosome 13, complete
             sequence
          Length = 156551

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 46    tatagttttaaccaaagtaaacat 69
             |||||||||||| |||||||||||
Sbjct: 58934 tatagttttaacaaaagtaaacat 58957
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>gb|AF188240.1|AF188240 Homo sapiens A1U mRNA, complete cds
          Length = 2890

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   accaaaagtaaacataagac 116
            ||||||||||||||||||||
Sbjct: 2493 accaaaagtaaacataagac 2474
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>ref|NM_020131.3| Homo sapiens ubiquilin 4 (UBQLN4), mRNA
          Length = 3545

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   accaaaagtaaacataagac 116
            ||||||||||||||||||||
Sbjct: 2239 accaaaagtaaacataagac 2220
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>gb|AC154185.1| Mus musculus BAC clone RP24-67L15 from chromosome 17, complete sequence
          Length = 167726

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 558    gtgagaagcaatctctcctg 577
              ||||||||||||||||||||
Sbjct: 119196 gtgagaagcaatctctcctg 119215
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>dbj|AK098368.1| Homo sapiens cDNA FLJ25502 fis, clone CBR04190, highly similar to
            Homo sapiens A1U mRNA
          Length = 2451

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   accaaaagtaaacataagac 116
            ||||||||||||||||||||
Sbjct: 1184 accaaaagtaaacataagac 1165
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>gb|AF113544.1|AF113544 Homo sapiens HRIHFB2157-like protein mRNA, partial cds
          Length = 3014

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   accaaaagtaaacataagac 116
            ||||||||||||||||||||
Sbjct: 1744 accaaaagtaaacataagac 1725
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>gb|BC018403.2| Homo sapiens ubiquilin 4, mRNA (cDNA clone MGC:16849 IMAGE:4214386),
            complete cds
          Length = 3519

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   accaaaagtaaacataagac 116
            ||||||||||||||||||||
Sbjct: 2227 accaaaagtaaacataagac 2208
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>gb|AC136517.3| Mus musculus BAC clone RP23-259O15 from 1, complete sequence
          Length = 220632

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 93     tttaaccaaaagtaaacataagac 116
              |||| |||||||||||||||||||
Sbjct: 162103 tttatccaaaagtaaacataagac 162080
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>dbj|AB209566.1| Homo sapiens mRNA for ataxin-1 ubiquitin-like interacting protein
            variant protein
          Length = 3479

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   accaaaagtaaacataagac 116
            ||||||||||||||||||||
Sbjct: 2212 accaaaagtaaacataagac 2193
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>gb|L25107.1|HUMLISA Human LIS mRNA
          Length = 1849

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 97   accaaaagtaaacataagac 116
            ||||||||||||||||||||
Sbjct: 1676 accaaaagtaaacataagac 1695


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,155,094
Number of Sequences: 3902068
Number of extensions: 4155094
Number of successful extensions: 68191
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68034
Number of HSP's gapped (non-prelim): 145
length of query: 661
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 638
effective length of database: 17,143,297,704
effective search space: 10937423935152
effective search space used: 10937423935152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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