ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20a01 |
|---|---|
| Clone Library Name | barley_pub |
>SPL1_ARATH (Q9SMX9) Squamosa promoter-binding-like protein 1| Length = 881 Score = 79.0 bits (193), Expect(2) = 2e-24 Identities = 53/133 (39%), Positives = 70/133 (52%), Gaps = 1/133 (0%) Frame = -3 Query: 595 GTLPEDYARRRGHTSYIQMVQNKINR-GLPAAHVSVSMTTTGITEEHADAGRPKSTDQTI 419 G PEDYAR RGH SYI ++Q KIN+ HV V++ + E + PKS Sbjct: 754 GFTPEDYARLRGHFSYIHLIQRKINKKSTTEDHVVVNIPVSFSDREQKE---PKSGPMAS 810 Query: 418 FDVEKSLPGCRQCVQLQHIAYRPCPNRFLSNRPAVLSLVAIAAVCVCVGLIMQSPPVVRG 239 +P C+ C H R ++ RPA+LS+VAIAAVCVCV L+ +S P V Sbjct: 811 ALEITQIP-CKLC---DHKLVYGTTRRSVAYRPAMLSMVAIAAVCVCVALLFKSCPEVLY 866 Query: 238 MPGPFLWNRLRWG 200 + PF W L +G Sbjct: 867 VFQPFRWELLDYG 879 Score = 53.5 bits (127), Expect(2) = 2e-24 Identities = 25/47 (53%), Positives = 33/47 (70%) Frame = -2 Query: 725 PSDITPFSHSAATISNAAAVLDALTDDPQQLGIKAWKNARDATGYTP 585 P+ +TP H AA + VLDALT+DP +GI+AWK RD+TG+TP Sbjct: 712 PAGLTPL-HIAAGKDGSEDVLDALTEDPAMVGIEAWKTCRDSTGFTP 757
>SPL12_ARATH (Q9S7P5) Squamosa promoter-binding-like protein 12| Length = 927 Score = 77.0 bits (188), Expect(2) = 7e-24 Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 1/133 (0%) Frame = -3 Query: 595 GTLPEDYARRRGHTSYIQMVQNKINRG-LPAAHVSVSMTTTGITEEHADAGRPKSTDQTI 419 G PEDYAR RGH SYI +VQ K++R + HV V++ + E + P D + Sbjct: 798 GFTPEDYARLRGHFSYIHLVQRKLSRKPIAKEHVVVNIPESFNIEHKQEKRSPM--DSSS 855 Query: 418 FDVEKSLPGCRQCVQLQHIAYRPCPNRFLSNRPAVLSLVAIAAVCVCVGLIMQSPPVVRG 239 ++ + + C+ C + + ++ ++ RPA+LS+VAIAAVCVCV L+ +S P V Sbjct: 856 LEITQ-INQCKLCDHKR--VFVTTHHKSVAYRPAMLSMVAIAAVCVCVALLFKSCPEVLY 912 Query: 238 MPGPFLWNRLRWG 200 + PF W L +G Sbjct: 913 VFQPFRWELLEYG 925 Score = 53.5 bits (127), Expect(2) = 7e-24 Identities = 26/47 (55%), Positives = 32/47 (68%) Frame = -2 Query: 725 PSDITPFSHSAATISNAAAVLDALTDDPQQLGIKAWKNARDATGYTP 585 P +TP H AA + VLDALT+DP GI+AWKN+RD TG+TP Sbjct: 756 PGGLTPL-HIAAGKDGSEDVLDALTEDPGMTGIQAWKNSRDNTGFTP 801
>SPL14_ARATH (Q8RY95) Squamosa promoter-binding-like protein 14 (SPL1-related| protein 2) Length = 1035 Score = 50.4 bits (119), Expect(2) = 8e-13 Identities = 23/47 (48%), Positives = 31/47 (65%) Frame = -2 Query: 725 PSDITPFSHSAATISNAAAVLDALTDDPQQLGIKAWKNARDATGYTP 585 P ITP H AA S + ++D LT+DPQ++G+ +W RDATG TP Sbjct: 868 PGGITPL-HLAACTSGSDDMIDLLTNDPQEIGLSSWNTLRDATGQTP 913 Score = 42.7 bits (99), Expect(2) = 8e-13 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 2/134 (1%) Frame = -3 Query: 595 GTLPEDYARRRGHTSYIQMVQNKINRGLPAAHVSVSMTTTGITEEHADAGRPKSTDQTIF 416 G P YA R + +Y +V K+ + VS+ EH + + + Sbjct: 910 GQTPYSYAAIRNNHNYNSLVARKL---ADKRNKQVSLNI-----EHEVVDQTGLSKRLSL 961 Query: 415 DVEKSLPGCRQCVQLQHIAY--RPCPNRFLSNRPAVLSLVAIAAVCVCVGLIMQSPPVVR 242 ++ KS C C + + Y R ++ L P + S++A+A VCVCV + M + P+VR Sbjct: 962 EMNKSSSSCASCATVA-LKYQRRVSGSQRLFPTPIIHSMLAVATVCVCVCVFMHAFPIVR 1020 Query: 241 GMPGPFLWNRLRWG 200 F W L +G Sbjct: 1021 -QGSHFSWGGLDYG 1033
>SPL16_ARATH (Q700C2) Squamosa promoter-binding-like protein 16 (SPL1-related| protein 3) Length = 988 Score = 52.8 bits (125), Expect(2) = 9e-12 Identities = 24/47 (51%), Positives = 33/47 (70%) Frame = -2 Query: 725 PSDITPFSHSAATISNAAAVLDALTDDPQQLGIKAWKNARDATGYTP 585 P DITP H AA+ S++ ++DALT+DPQ++G+ W DATG TP Sbjct: 825 PGDITPL-HLAASTSSSDDMIDALTNDPQEIGLSCWNTLVDATGQTP 870 Score = 37.0 bits (84), Expect(2) = 9e-12 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 4/136 (2%) Frame = -3 Query: 595 GTLPEDYARRRGHTSYIQMVQNKI---NRGLPAAHVSVSMTTTGITEEHADAGRPKSTDQ 425 G P YA R + SY +V K+ G + ++ + G+++ + Sbjct: 867 GQTPFSYAAMRDNHSYNTLVARKLADKRNGQISLNIENGIDQIGLSKRLSS--------- 917 Query: 424 TIFDVEKSLPGCRQCVQLQHIAYRPCP-NRFLSNRPAVLSLVAIAAVCVCVGLIMQSPPV 248 ++++S C C + R +R L P + S++A+A VCVCV + M + P+ Sbjct: 918 ---ELKRS---CNTCASVALKYQRKVSGSRRLFPTPIIHSMLAVATVCVCVCVFMHAFPM 971 Query: 247 VRGMPGPFLWNRLRWG 200 VR F W L +G Sbjct: 972 VR-QGSHFSWGGLDYG 986
>ANC1_HUMAN (Q9H1A4) Anaphase-promoting complex subunit 1 (APC1) (Cyclosome| subunit 1) (Protein Tsg24) (Mitotic checkpoint regulator) Length = 1944 Score = 31.2 bits (69), Expect = 3.4 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = +3 Query: 147 SRVYRLAESAADWALQVGPQRRRFQRKGPGIPRTTGGLCIIKPTQT 284 S V L + A D L++GP + R P + RTTG +C I P QT Sbjct: 785 SLVELLVQLARD--LKLGPYVDHYYRDYPTLVRTTGQVCTIDPGQT 828
>IL21R_MOUSE (Q9JHX3) Interleukin-21 receptor precursor (IL-21R) (Novel| interleukin receptor) (Lymphocyte receptor beta) (LR-beta) (Novel cytokine receptor NR8) Length = 529 Score = 31.2 bits (69), Expect = 3.4 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +3 Query: 9 IVSLTHSTTMKSSNIQ*NYCYLSRVGHSTTHIMY 110 I+SLT + Q +C L R GH+TTHI Y Sbjct: 46 ILSLTWQDEYEELQDQETFCSLHRSGHNTTHIWY 79
>HMEN_ANOGA (O02491) Segmentation polarity homeobox protein engrailed| Length = 596 Score = 30.8 bits (68), Expect = 4.4 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Frame = -1 Query: 513 YLQPMCLFP*PPLVSPKSMQMQVVRNQLIRPYLMSRKAYRDADNVSSSST-LPTGPAQTG 337 Y QP P P + P+ ++ R+ L RPY +S+ + N SSS+T LP P T Sbjct: 199 YYQPSPSHPQPIVPQPQRASLER-RDSLFRPYDISKSPRLCSSNGSSSATPLPLHPYHTD 257 Query: 336 S-CRT 325 S C T Sbjct: 258 SDCST 262
>DYR1B_MOUSE (Q9Z188) Dual specificity tyrosine-phosphorylation-regulated kinase| 1B (EC 2.7.12.1) Length = 589 Score = 30.8 bits (68), Expect = 4.4 Identities = 30/112 (26%), Positives = 43/112 (38%) Frame = -1 Query: 621 LEECPRCDRVHSQRITLGGEGTHPTSRWSRTKLTGGYLQPMCLFP*PPLVSPKSMQMQVV 442 L+ CP S + G G+ +R R Y C P PP+ + QV+ Sbjct: 415 LDTCPSSSTASSISSSGGSSGSSNDNRAYR------YSNRYCGGPGPPITDCEMNSPQVL 468 Query: 441 RNQLIRPYLMSRKAYRDADNVSSSSTLPTGPAQTGSCRTGLRCYPWSPLPLS 286 +Q +RP+ ++ S+STLP AQ RC P P S Sbjct: 469 PSQPLRPWAGGDVPHKTHQAPISASTLPGTGAQLPPLP---RCLGRPPSPTS 517
>TRUD_XANCP (Q8P9Y9) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 367 Score = 30.4 bits (67), Expect = 5.8 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = -2 Query: 683 SNAAAVLDALTDDPQQLGIKAWKNARDATGYTPRGLRSEERAHILHPDG 537 ++AAA+ A DPQ L ++ TG GL+ E RA L P G Sbjct: 280 ADAAAIEQAALSDPQSLALR--------TGLEAAGLKQERRALRLRPQG 320
>TRUD_XANC8 (Q4UTP6) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 367 Score = 30.4 bits (67), Expect = 5.8 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = -2 Query: 683 SNAAAVLDALTDDPQQLGIKAWKNARDATGYTPRGLRSEERAHILHPDG 537 ++AAA+ A DPQ L ++ TG GL+ E RA L P G Sbjct: 280 ADAAAIEQAALSDPQSLALR--------TGLEAAGLKQERRALRLRPQG 320
>FOXH1_MOUSE (O88621) Forkhead box protein H1 (Forkhead activin signal| transducer 1) (Fast-1) (Forkhead activin signal transducer 2) (Fast-2) Length = 401 Score = 30.0 bits (66), Expect = 7.6 Identities = 28/94 (29%), Positives = 38/94 (40%) Frame = -1 Query: 567 GEGTHPTSRWSRTKLTGGYLQPMCLFP*PPLVSPKSMQMQVVRNQLIRPYLMSRKAYRDA 388 G GT P+S S T L P+C P P ++ +S Q +V+R + P S + Sbjct: 237 GMGTGPSSS-SETPLW-----PLCSLPGPTIIEGESSQGEVIRPSPVTPDQGSWPLHLLE 290 Query: 387 DNVSSSSTLPTGPAQTGSCRTGLRCYPWSPLPLS 286 D+ S G R G R W LP S Sbjct: 291 DSADS----------RGVPRRGSRASLWGQLPTS 314
>SMTA_ASTBI (P56707) Selenocysteine methyltransferase (EC 2.1.1.-)| (SECYS-methyltransferase) (SECYS-MT) Length = 338 Score = 29.6 bits (65), Expect = 9.9 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +2 Query: 224 KRTRHTADDRRALHYQTYADADSGNGDQG*HRRPVRQEPVW-AGPVGN 364 +R+ A + R L+YQ A++ S NGD R ++Q P+ AG VG+ Sbjct: 93 RRSVEIAREARDLYYQRCAESSSDNGDDS---RILKQRPILIAGSVGS 137
>ATG12_YARLI (Q6BZZ1) Autophagy-related protein 12 (Autophagy-related| ubiquitin-like modifier ATG12) Length = 205 Score = 29.6 bits (65), Expect = 9.9 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -1 Query: 405 KAYRDADNVSSSSTLPTGPAQTGSCRTGLRCYPWSPLPLSASA 277 +A D D ++++ PTGP+ T S P +P LSASA Sbjct: 49 EALHDDDPLTTTQDHPTGPSATASDTIDSTPQPMAPATLSASA 91
>DYR1B_HUMAN (Q9Y463) Dual specificity tyrosine-phosphorylation-regulated kinase| 1B (EC 2.7.12.1) (Mirk protein kinase) (Minibrain-related kinase) Length = 629 Score = 29.6 bits (65), Expect = 9.9 Identities = 24/93 (25%), Positives = 38/93 (40%) Frame = -1 Query: 621 LEECPRCDRVHSQRITLGGEGTHPTSRWSRTKLTGGYLQPMCLFP*PPLVSPKSMQMQVV 442 L+ CP S + G G+ +R R Y C P PP+ + QV Sbjct: 455 LDTCPSSSTASSISSSGGSSGSSSDNRTYR------YSNRYCGGPGPPITDCEMNSPQVP 508 Query: 441 RNQLIRPYLMSRKAYRDADNVSSSSTLPTGPAQ 343 +Q +RP+ ++ +S+S+LP AQ Sbjct: 509 PSQPLRPWAGGDVPHKTHQAPASASSLPGTGAQ 541 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 111,786,329 Number of Sequences: 219361 Number of extensions: 2499958 Number of successful extensions: 7321 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 7004 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7313 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7479594804 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
