ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_183623.1| Oryza sativa (japonica cultivar-group), predic... 137 6e-29
2dbj|AK072849.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 6e-29
3dbj|AK068471.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 6e-29
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
5dbj|AP002482.1| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
6gb|AY109893.1| Zea mays CL8822_1 mRNA sequence 66 2e-07
7gb|AC122014.3| Mus musculus chromosome 1 clone RP24-358F15, comp... 44 0.64
8gb|AC166108.4| Mus musculus BAC clone RP23-192E10 from chromosom... 44 0.64
9gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 44 0.64
10emb|BX088603.12| Zebrafish DNA sequence from clone DKEYP-44D3, c... 44 0.64
11gb|AC148324.2| Mus musculus BAC clone RP24-454N4 from chromosome... 42 2.5
12ref|XM_712021.1| Candida albicans SC5314 hypothetical protein (C... 42 2.5
13ref|XM_711942.1| Candida albicans SC5314 hypothetical protein (C... 42 2.5
14emb|AL356073.15| Human DNA sequence from clone RP11-813O3 on chr... 42 2.5
15emb|AL158193.13| Human DNA sequence from clone RP11-400N12 on ch... 42 2.5
16gb|AC087163.10| Homo sapiens chromosome 17, clone RP11-384M20, c... 42 2.5
17gb|AC026387.7|AC026387 Mus musculus 11 BAC RP23-476H9 (Roswell P... 42 2.5
18emb|BX005249.6| Zebrafish DNA sequence from clone CH211-188M4, c... 42 2.5
19gb|AC147218.4| Mus musculus BAC clone RP23-11I13 from 12, comple... 42 2.5
20emb|CR936365.7| Zebrafish DNA sequence from clone CH73-41C10 in ... 40 9.9
21gb|AC102551.8| Mus musculus chromosome 16, clone RP23-154N19, co... 40 9.9
22emb|AL357127.17| Human DNA sequence from clone RP11-282I1 on chr... 40 9.9
23gb|AC023684.4| Drosophila melanogaster X BAC RP98-7P13 (Roswell ... 40 9.9
24gb|AC023740.4| Drosophila melanogaster X BAC RP98-27J18 (Roswell... 40 9.9
25gb|AC023748.4| Drosophila melanogaster X BAC RP98-36F8 (Roswell ... 40 9.9
26ref|NM_167167.1| Drosophila melanogaster CG32710-RA (CG32710), mRNA 40 9.9
27gb|AC008260.5|AC008260 Drosophila melanogaster, chromosome 2R, r... 40 9.9
28gb|AC093327.5| Homo sapiens BAC clone RP11-765B19 from 2, comple... 40 9.9
29gb|AC023724.5| Drosophila melanogaster X BAC RP98-14B2 (Roswell ... 40 9.9
30emb|BX908392.13| Zebrafish DNA sequence from clone DKEY-192M14 i... 40 9.9
31gb|AC156506.4| Mus musculus 6 BAC RP24-266P6 (Roswell Park Cance... 40 9.9
32gb|AE003828.4| Drosophila melanogaster chromosome 2R, section 22... 40 9.9
33gb|AE003445.2| Drosophila melanogaster chromosome X, section 29 ... 40 9.9
34gb|AE003434.4| Drosophila melanogaster chromosome X, section 18 ... 40 9.9
35gb|AC005437.1|AC005437 Drosophila melanogaster DNA sequence (P1 ... 40 9.9 
>ref|NM_183623.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2589

 Score =  137 bits (69), Expect = 6e-29
 Identities = 157/185 (84%), Gaps = 1/185 (0%)
 Strand = Plus / Minus

                                                                        
Query: 492  acagacacatgggctgcaggtaaccccctgttaattttgttctggaccatctggatgtag 551
            ||||||||||| |||   |||||||  |||| ||| |||||||||||||||| |||||||
Sbjct: 2267 acagacacatgagctttgggtaacctgctgtcaatcttgttctggaccatctcgatgtag 2208

                                                                        
Query: 552  gatgtgtgccctctcctccgagcgtaatcctctgggagtgtacccggtcgcatcgcgggc 611
            |||  ||| |||||| |||||||||||||||| || |||  | || || |||||||| ||
Sbjct: 2207 gattcgtggcctctcttccgagcgtaatcctccgg-agtcaatccagtagcatcgcgagc 2149

                                                                        
Query: 612  attcttccaggctttgatccctagctgttgaggatcatcagttagagcatccaaaacagc 671
            ||||||||| |||||||| || ||||| |||||||||||||||| |||||| |||||| |
Sbjct: 2148 attcttccatgctttgattcccagctgctgaggatcatcagttaaagcatctaaaacacc 2089

                 
Query: 672  agcag 676
            |||||
Sbjct: 2088 agcag 2084



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 71/84 (84%)
 Strand = Plus / Minus

                                                                        
Query: 260  ctgcattatcaaacctacgcagacgcagacagcggcaatggcgaccaaggatagcaccgc 319
            |||||| ||||| ||||| ||||| |||||||| ||||||||||||||||| || || ||
Sbjct: 2520 ctgcatgatcaaccctacacagacacagacagcagcaatggcgaccaaggagagtactgc 2461

                                    
Query: 320  aggcctgttcgacaagaacctgtt 343
             |||||| | ||||  ||||||||
Sbjct: 2460 tggcctggttgacagaaacctgtt 2437
to top
>dbj|AK072849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142C13, full
            insert sequence
          Length = 2945

 Score =  137 bits (69), Expect = 6e-29
 Identities = 157/185 (84%), Gaps = 1/185 (0%)
 Strand = Plus / Minus

                                                                        
Query: 492  acagacacatgggctgcaggtaaccccctgttaattttgttctggaccatctggatgtag 551
            ||||||||||| |||   |||||||  |||| ||| |||||||||||||||| |||||||
Sbjct: 2417 acagacacatgagctttgggtaacctgctgtcaatcttgttctggaccatctcgatgtag 2358

                                                                        
Query: 552  gatgtgtgccctctcctccgagcgtaatcctctgggagtgtacccggtcgcatcgcgggc 611
            |||  ||| |||||| |||||||||||||||| || |||  | || || |||||||| ||
Sbjct: 2357 gattcgtggcctctcttccgagcgtaatcctccgg-agtcaatccagtagcatcgcgagc 2299

                                                                        
Query: 612  attcttccaggctttgatccctagctgttgaggatcatcagttagagcatccaaaacagc 671
            ||||||||| |||||||| || ||||| |||||||||||||||| |||||| |||||| |
Sbjct: 2298 attcttccatgctttgattcccagctgctgaggatcatcagttaaagcatctaaaacacc 2239

                 
Query: 672  agcag 676
            |||||
Sbjct: 2238 agcag 2234



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 71/84 (84%)
 Strand = Plus / Minus

                                                                        
Query: 260  ctgcattatcaaacctacgcagacgcagacagcggcaatggcgaccaaggatagcaccgc 319
            |||||| ||||| ||||| ||||| |||||||| ||||||||||||||||| || || ||
Sbjct: 2670 ctgcatgatcaaccctacacagacacagacagcagcaatggcgaccaaggagagtactgc 2611

                                    
Query: 320  aggcctgttcgacaagaacctgtt 343
             |||||| | ||||  ||||||||
Sbjct: 2610 tggcctggttgacagaaacctgtt 2587
to top
>dbj|AK068471.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155F18, full
            insert sequence
          Length = 3246

 Score =  137 bits (69), Expect = 6e-29
 Identities = 157/185 (84%), Gaps = 1/185 (0%)
 Strand = Plus / Minus

                                                                        
Query: 492  acagacacatgggctgcaggtaaccccctgttaattttgttctggaccatctggatgtag 551
            ||||||||||| |||   |||||||  |||| ||| |||||||||||||||| |||||||
Sbjct: 2621 acagacacatgagctttgggtaacctgctgtcaatcttgttctggaccatctcgatgtag 2562

                                                                        
Query: 552  gatgtgtgccctctcctccgagcgtaatcctctgggagtgtacccggtcgcatcgcgggc 611
            |||  ||| |||||| |||||||||||||||| || |||  | || || |||||||| ||
Sbjct: 2561 gattcgtggcctctcttccgagcgtaatcctccgg-agtcaatccagtagcatcgcgagc 2503

                                                                        
Query: 612  attcttccaggctttgatccctagctgttgaggatcatcagttagagcatccaaaacagc 671
            ||||||||| |||||||| || ||||| |||||||||||||||| |||||| |||||| |
Sbjct: 2502 attcttccatgctttgattcccagctgctgaggatcatcagttaaagcatctaaaacacc 2443

                 
Query: 672  agcag 676
            |||||
Sbjct: 2442 agcag 2438



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 71/84 (84%)
 Strand = Plus / Minus

                                                                        
Query: 260  ctgcattatcaaacctacgcagacgcagacagcggcaatggcgaccaaggatagcaccgc 319
            |||||| ||||| ||||| ||||| |||||||| ||||||||||||||||| || || ||
Sbjct: 2874 ctgcatgatcaaccctacacagacacagacagcagcaatggcgaccaaggagagtactgc 2815

                                    
Query: 320  aggcctgttcgacaagaacctgtt 343
             |||||| | ||||  ||||||||
Sbjct: 2814 tggcctggttgacagaaacctgtt 2791
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 124/148 (83%), Gaps = 1/148 (0%)
 Strand = Plus / Minus

                                                                            
Query: 492      acagacacatgggctgcaggtaaccccctgttaattttgttctggaccatctggatgtag 551
                ||||||||||| |||   |||||||  |||| ||| |||||||||||||||| |||||||
Sbjct: 10654206 acagacacatgagctttgggtaacctgctgtcaatcttgttctggaccatctcgatgtag 10654147

                                                                            
Query: 552      gatgtgtgccctctcctccgagcgtaatcctctgggagtgtacccggtcgcatcgcgggc 611
                |||  ||| |||||| ||||||||||||||||  |||||  | || || |||||||| ||
Sbjct: 10654146 gattcgtggcctctcttccgagcgtaatcctc-cggagtcaatccagtagcatcgcgagc 10654088

                                            
Query: 612      attcttccaggctttgatccctagctgt 639
                ||||||||| |||||||| || ||||||
Sbjct: 10654087 attcttccatgctttgattcccagctgt 10654060



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 71/84 (84%)
 Strand = Plus / Minus

                                                                            
Query: 260      ctgcattatcaaacctacgcagacgcagacagcggcaatggcgaccaaggatagcaccgc 319
                |||||| ||||| ||||| ||||| |||||||| ||||||||||||||||| || || ||
Sbjct: 10654459 ctgcatgatcaaccctacacagacacagacagcagcaatggcgaccaaggagagtactgc 10654400

                                        
Query: 320      aggcctgttcgacaagaacctgtt 343
                 |||||| | ||||  ||||||||
Sbjct: 10654399 tggcctggttgacagaaacctgtt 10654376



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 640      tgaggatcatcagttagagcatccaaaacagcagcag 676
                |||||||||||||||| |||||| |||||| ||||||
Sbjct: 10653697 tgaggatcatcagttaaagcatctaaaacaccagcag 10653661
to top
>dbj|AP002482.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0706B05
          Length = 187835

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 124/148 (83%), Gaps = 1/148 (0%)
 Strand = Plus / Minus

                                                                          
Query: 492    acagacacatgggctgcaggtaaccccctgttaattttgttctggaccatctggatgtag 551
              ||||||||||| |||   |||||||  |||| ||| |||||||||||||||| |||||||
Sbjct: 148829 acagacacatgagctttgggtaacctgctgtcaatcttgttctggaccatctcgatgtag 148770

                                                                          
Query: 552    gatgtgtgccctctcctccgagcgtaatcctctgggagtgtacccggtcgcatcgcgggc 611
              |||  ||| |||||| ||||||||||||||||  |||||  | || || |||||||| ||
Sbjct: 148769 gattcgtggcctctcttccgagcgtaatcctc-cggagtcaatccagtagcatcgcgagc 148711

                                          
Query: 612    attcttccaggctttgatccctagctgt 639
              ||||||||| |||||||| || ||||||
Sbjct: 148710 attcttccatgctttgattcccagctgt 148683



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 71/84 (84%)
 Strand = Plus / Minus

                                                                          
Query: 260    ctgcattatcaaacctacgcagacgcagacagcggcaatggcgaccaaggatagcaccgc 319
              |||||| ||||| ||||| ||||| |||||||| ||||||||||||||||| || || ||
Sbjct: 149082 ctgcatgatcaaccctacacagacacagacagcagcaatggcgaccaaggagagtactgc 149023

                                      
Query: 320    aggcctgttcgacaagaacctgtt 343
               |||||| | ||||  ||||||||
Sbjct: 149022 tggcctggttgacagaaacctgtt 148999



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                   
Query: 640    tgaggatcatcagttagagcatccaaaacagcagcag 676
              |||||||||||||||| |||||| |||||| ||||||
Sbjct: 148320 tgaggatcatcagttaaagcatctaaaacaccagcag 148284
to top
>gb|AY109893.1| Zea mays CL8822_1 mRNA sequence
          Length = 1029

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                       
Query: 613 ttcttccaggctttgatccctagctgttgaggatcatcagttagagcatccaaaacagca 672
           |||||||| |||||||| || | ||| |||||||||||||||| |||||| |||||| ||
Sbjct: 623 ttcttccacgctttgattcccaactgctgaggatcatcagttaaagcatctaaaacacca 682

                                        
Query: 673 gcagcattactgatggtagctgcactatg 701
             ||||| |||||| || |||||| ||||
Sbjct: 683 atagcatcactgattgtggctgcaatatg 711



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                       
Query: 256 ggctctgcattatcaaacctacgcagacgcagacagcggcaatggcgaccaaggatagca 315
           |||||| ||| ||||| || || ||||||||||| || ||||||| ||||||||| ||||
Sbjct: 249 ggctcttcatgatcaatcccacacagacgcagacggcagcaatggagaccaaggaaagca 308

                 
Query: 316 ccgcag 321
            |||||
Sbjct: 309 tcgcag 314
to top
>gb|AC122014.3| Mus musculus chromosome 1 clone RP24-358F15, complete sequence
          Length = 168526

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 480   gtggtcatggaaacagacacat 501
             ||||||||||||||||||||||
Sbjct: 10783 gtggtcatggaaacagacacat 10762
to top
>gb|AC166108.4| Mus musculus BAC clone RP23-192E10 from chromosome 1, complete sequence
          Length = 188836

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 480    gtggtcatggaaacagacacat 501
              ||||||||||||||||||||||
Sbjct: 166206 gtggtcatggaaacagacacat 166185
to top
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 317    cgcaggcctgttcgacaagaac 338
              ||||||||||||||||||||||
Sbjct: 201645 cgcaggcctgttcgacaagaac 201666
to top
>emb|BX088603.12| Zebrafish DNA sequence from clone DKEYP-44D3, complete sequence
          Length = 177056

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 16    ctctgactcacagtacaacaatgaaa 41
             |||||||| |||||||||||||||||
Sbjct: 42088 ctctgacttacagtacaacaatgaaa 42113
to top
>gb|AC148324.2| Mus musculus BAC clone RP24-454N4 from chromosome 12, complete sequence
          Length = 183478

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 550   aggatgtgtgccctctcctcc 570
             |||||||||||||||||||||
Sbjct: 23556 aggatgtgtgccctctcctcc 23536
to top
>ref|XM_712021.1| Candida albicans SC5314 hypothetical protein (CaO19_5311), mRNA
          Length = 2529

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 662 ccaaaacagcagcagcattac 682
           |||||||||||||||||||||
Sbjct: 665 ccaaaacagcagcagcattac 685
to top
>ref|XM_711942.1| Candida albicans SC5314 hypothetical protein (CaO19_12771), mRNA
          Length = 2529

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 662 ccaaaacagcagcagcattac 682
           |||||||||||||||||||||
Sbjct: 665 ccaaaacagcagcagcattac 685
to top
>emb|AL356073.15| Human DNA sequence from clone RP11-813O3 on chromosome 10, complete
              sequence
          Length = 165917

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 18     ctgactcacagtacaacaatgaaaagctc 46
              |||| ||||||||||||||||| ||||||
Sbjct: 142066 ctgattcacagtacaacaatgataagctc 142038
to top
>emb|AL158193.13| Human DNA sequence from clone RP11-400N12 on chromosome 13 Contains the
              3' end of the UBL3 gene for ubiquitin-like 3 and a CpG
              island, complete sequence
          Length = 172896

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 623    ctttgatccctagctgttgaggatcatca 651
              ||||| ||||||||||||||| |||||||
Sbjct: 112295 ctttgctccctagctgttgagcatcatca 112323
to top
>gb|AC087163.10| Homo sapiens chromosome 17, clone RP11-384M20, complete sequence
          Length = 140195

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 107    gtacagagattgcactttggt 127
              |||||||||||||||||||||
Sbjct: 125418 gtacagagattgcactttggt 125438
to top
>gb|AC026387.7|AC026387 Mus musculus 11 BAC RP23-476H9 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 204318

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 550   aggatgtgtgccctctcctcc 570
             |||||||||||||||||||||
Sbjct: 76582 aggatgtgtgccctctcctcc 76602
to top
>emb|BX005249.6| Zebrafish DNA sequence from clone CH211-188M4, complete sequence
          Length = 154305

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 505   ctgcaggtaaccccctgttaatttt 529
             ||||||||||||||| |||||||||
Sbjct: 29535 ctgcaggtaacccccagttaatttt 29511
to top
>gb|AC147218.4| Mus musculus BAC clone RP23-11I13 from 12, complete sequence
          Length = 217668

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 550   aggatgtgtgccctctcctcc 570
             |||||||||||||||||||||
Sbjct: 45204 aggatgtgtgccctctcctcc 45224
to top
>emb|CR936365.7| Zebrafish DNA sequence from clone CH73-41C10 in linkage group 22,
             complete sequence
          Length = 133687

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 664   aaaacagcagcagcattact 683
             ||||||||||||||||||||
Sbjct: 31312 aaaacagcagcagcattact 31331
to top
>gb|AC102551.8| Mus musculus chromosome 16, clone RP23-154N19, complete sequence
          Length = 232454

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   tataatgtacagagattgca 120
             ||||||||||||||||||||
Sbjct: 31807 tataatgtacagagattgca 31788
to top
>emb|AL357127.17| Human DNA sequence from clone RP11-282I1 on chromosome 10 Contains the
             3' end of a novel gene and a novel gene, complete sequence
          Length = 124343

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 621   ggctttgatccctagctgtt 640
             ||||||||||||||||||||
Sbjct: 17188 ggctttgatccctagctgtt 17207
to top
>gb|AC023684.4| Drosophila melanogaster X BAC RP98-7P13 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 178077

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   agcatcctcactctcgagtg 155
             ||||||||||||||||||||
Sbjct: 25446 agcatcctcactctcgagtg 25465
to top
>gb|AC023740.4| Drosophila melanogaster X BAC RP98-27J18 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 163764

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   agcatcctcactctcgagtg 155
             ||||||||||||||||||||
Sbjct: 11383 agcatcctcactctcgagtg 11364
to top
>gb|AC023748.4| Drosophila melanogaster X BAC RP98-36F8 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 156096

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 659   catccaaaacagcagcagca 678
             ||||||||||||||||||||
Sbjct: 81434 catccaaaacagcagcagca 81415



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 659   catccaaaacagcagcagca 678
             ||||||||||||||||||||
Sbjct: 81374 catccaaaacagcagcagca 81355
to top
>ref|NM_167167.1| Drosophila melanogaster CG32710-RA (CG32710), mRNA
          Length = 351

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 659 catccaaaacagcagcagca 678
           ||||||||||||||||||||
Sbjct: 151 catccaaaacagcagcagca 170



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 659 catccaaaacagcagcagca 678
           ||||||||||||||||||||
Sbjct: 91  catccaaaacagcagcagca 110
to top
>gb|AC008260.5|AC008260 Drosophila melanogaster, chromosome 2R, region 47B-47C, BAC clone
             BACR13J10, complete sequence
          Length = 140940

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 655   agagcatccaaaacagcagcagca 678
             |||||||||||| |||||||||||
Sbjct: 47069 agagcatccaaatcagcagcagca 47046
to top
>gb|AC093327.5| Homo sapiens BAC clone RP11-765B19 from 2, complete sequence
          Length = 7198

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   aactcatataatgtacagag 114
            ||||||||||||||||||||
Sbjct: 4114 aactcatataatgtacagag 4095
to top
>gb|AC023724.5| Drosophila melanogaster X BAC RP98-14B2 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 181974

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 659   catccaaaacagcagcagca 678
             ||||||||||||||||||||
Sbjct: 49369 catccaaaacagcagcagca 49350



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 659   catccaaaacagcagcagca 678
             ||||||||||||||||||||
Sbjct: 49309 catccaaaacagcagcagca 49290
to top
>emb|BX908392.13| Zebrafish DNA sequence from clone DKEY-192M14 in linkage group 22,
             complete sequence
          Length = 179577

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 664   aaaacagcagcagcattact 683
             ||||||||||||||||||||
Sbjct: 58378 aaaacagcagcagcattact 58397
to top
>gb|AC156506.4| Mus musculus 6 BAC RP24-266P6 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 164284

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 694   gcactatgggagaagggtgt 713
             ||||||||||||||||||||
Sbjct: 89538 gcactatgggagaagggtgt 89557
to top
>gb|AE003828.4| Drosophila melanogaster chromosome 2R, section 22 of 73 of the complete
              sequence
          Length = 257907

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 655    agagcatccaaaacagcagcagca 678
              |||||||||||| |||||||||||
Sbjct: 208019 agagcatccaaatcagcagcagca 207996
to top
>gb|AE003445.2| Drosophila melanogaster chromosome X, section 29 of 74 of the complete
              sequence
          Length = 334222

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 659    catccaaaacagcagcagca 678
              ||||||||||||||||||||
Sbjct: 105014 catccaaaacagcagcagca 105033



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 659    catccaaaacagcagcagca 678
              ||||||||||||||||||||
Sbjct: 104954 catccaaaacagcagcagca 104973
to top
>gb|AE003434.4| Drosophila melanogaster chromosome X, section 18 of 74 of the complete
              sequence
          Length = 303928

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    agcatcctcactctcgagtg 155
              ||||||||||||||||||||
Sbjct: 240764 agcatcctcactctcgagtg 240745
to top
>gb|AC005437.1|AC005437 Drosophila melanogaster DNA sequence (P1 DS00682 (D351)), complete
            sequence
          Length = 55227

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 655  agagcatccaaaacagcagcagca 678
            |||||||||||| |||||||||||
Sbjct: 6056 agagcatccaaatcagcagcagca 6033


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,071,150
Number of Sequences: 3902068
Number of extensions: 6071150
Number of successful extensions: 103792
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103618
Number of HSP's gapped (non-prelim): 169
length of query: 726
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 703
effective length of database: 17,143,297,704
effective search space: 12051738285912
effective search space used: 12051738285912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top