ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19p21 |
|---|---|
| Clone Library Name | barley_pub |
>PFPB_RICCO (Q41141) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate-dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 552 Score = 263 bits (672), Expect = 3e-70 Identities = 121/146 (82%), Positives = 135/146 (92%) Frame = -3 Query: 598 KRRAAGKYSAHFRGQSHFFGYEGRCGLPTNFDSSYCYALGYGAGALLQFGKTGLISSVGN 419 KR+ G Y AHF+GQSHFFGYEGRCGLPTNFDS+YCYALGY AGALL GKTGLISSVGN Sbjct: 405 KRKQQGTYKAHFKGQSHFFGYEGRCGLPTNFDSTYCYALGYAAGALLHSGKTGLISSVGN 464 Query: 418 LAAPVEQWTVGGTALTALMDVERRHGKFKPVIKKAMVELDAAPFKKFASMRDEWAIKNRY 239 L APV +WTVGGTALT+LMDVERRHGKFKPVIKKAMVEL+ APFKKFAS+R+EWA+KNRY Sbjct: 465 LGAPVAEWTVGGTALTSLMDVERRHGKFKPVIKKAMVELEGAPFKKFASLREEWALKNRY 524 Query: 238 ISPGPIQFSGPGSDASNHTLMLELGA 161 +SPGPIQF GPGSDA++HTL+LELG+ Sbjct: 525 VSPGPIQFMGPGSDAASHTLLLELGS 550
>PFPB_SOLTU (P21343) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 552 Score = 246 bits (629), Expect = 3e-65 Identities = 116/147 (78%), Positives = 132/147 (89%) Frame = -3 Query: 598 KRRAAGKYSAHFRGQSHFFGYEGRCGLPTNFDSSYCYALGYGAGALLQFGKTGLISSVGN 419 +R+ G Y+A F+GQ HFFGYEGRCGLP+NFDS+YCYALGYGAG+LLQ GKTGLISSVGN Sbjct: 405 QRKQKGAYNAQFKGQFHFFGYEGRCGLPSNFDSTYCYALGYGAGSLLQSGKTGLISSVGN 464 Query: 418 LAAPVEQWTVGGTALTALMDVERRHGKFKPVIKKAMVELDAAPFKKFASMRDEWAIKNRY 239 LAAPVE+ TVGGTALTALMDVERRHGKFKPVIKKAMVEL+ APFKKFAS R+EWA+ NRY Sbjct: 465 LAAPVEELTVGGTALTALMDVERRHGKFKPVIKKAMVELEGAPFKKFASKREEWALNNRY 524 Query: 238 ISPGPIQFSGPGSDASNHTLMLELGAE 158 I+PGPIQF GP ++ NHTL+LELG + Sbjct: 525 INPGPIQFVGPVANKVNHTLLLELGVD 551
>PFPA_SOLTU (P21342) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate-dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 616 Score = 89.7 bits (221), Expect = 6e-18 Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 8/151 (5%) Frame = -3 Query: 598 KRRAAGKYSAH-FRGQSHFFGYEGRCGLPTNFDSSYCYALGYGAGALLQFGKTGLISSVG 422 KR G Y F HFFGY+ R LP+ FD Y Y LG+ +L G G ++++ Sbjct: 409 KRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHVCYHILAAGLNGYMATIT 468 Query: 421 NLAAPVEQWTVGGTALTALMDVERRHGKFK-------PVIKKAMVELDAAPFKKFASMRD 263 NL P +W G + ++A+M V +R+G+ P + A V+L ++ + Sbjct: 469 NLKNPANKWHCGASPISAMMTV-KRYGRGPGKASIGVPALHPATVDLRGKSYELLSQNAT 527 Query: 262 EWAIKNRYISPGPIQFSGPGSDASNHTLMLE 170 ++ + + Y +PGP+QF GPG+DA +L++E Sbjct: 528 KFLLDDVYRNPGPLQFDGPGADAKAGSLVVE 558
>PFPA_RICCO (Q41140) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 617 Score = 89.0 bits (219), Expect = 1e-17 Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 7/150 (4%) Frame = -3 Query: 598 KRRAAGKYSAH-FRGQSHFFGYEGRCGLPTNFDSSYCYALGYGAGALLQFGKTGLISSVG 422 KR G Y F HFFGY+ R LP+ FD Y Y LG+ +L G G +++ Sbjct: 409 KRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHVLAAGLNGYMATAT 468 Query: 421 NLAAPVEQWTVGGTALTALMDVER------RHGKFKPVIKKAMVELDAAPFKKFASMRDE 260 NL PV +W G + A+M V+R KP I A V+L ++ + Sbjct: 469 NLKNPVNKWRCGAAPIAAMMTVKRWAQNPGATSIGKPAIHPAAVDLKGKAYELLRLNAVK 528 Query: 259 WAIKNRYISPGPIQFSGPGSDASNHTLMLE 170 + + + Y +PGP+QF GPG+DA TL +E Sbjct: 529 FLMDDLYRNPGPLQFEGPGADAKPITLCVE 558
>Y2348_MYCLE (Q49929) Hypothetical glycosyl transferase ML2348 (EC 2.-.-.-)| Length = 421 Score = 37.4 bits (85), Expect = 0.033 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 8/107 (7%) Frame = +2 Query: 74 WEVCSPLSKLQGTRRKFQRDALYIRSLYLGAELQHQGVV-RGVASRAAELDGTGADVSVL 250 W++ P+ LQ R+ + A ++SL GA+L GVV +GV + AE G V Sbjct: 73 WKILPPIKALQQLRQAWADMATDLKSLADGADLVMTGVVYQGVVANVAEYYGIPFGVL-- 130 Query: 251 DGPFIPHR--GKLLKWRSIKLNHSLL-----DHWLELAMPPLNIHQR 370 F+P R GK++ LN ++L HWL LA P + +R Sbjct: 131 --HFVPARVNGKIIPSLPSPLNRAILATVWRAHWL-LAKKPEDAQRR 174
>NU1M_HYLLA (Q96126) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 33.1 bits (74), Expect = 0.63 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Frame = +3 Query: 114 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 281 +E K ST+ALYI AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPSTSTTALYIIAPTLALTIALLLWTPLPMPNPLINLNLGLL--FILATSSLTVYS 115 Query: 282 FL-NGAASSSTIAFL 323 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>LASP1_DROME (Q8I7C3) LIM and SH3 domain protein Lasp| Length = 657 Score = 32.7 bits (73), Expect = 0.82 Identities = 19/52 (36%), Positives = 26/52 (50%) Frame = +1 Query: 349 SSQHPSTQSVQFLQQSIVPQEQPGYQPTR*VLSCQTGEEHQHHSLMHSNSWN 504 +S HPS SV Q Q QP Q T L ++ HHSL+++N+ N Sbjct: 332 NSHHPSGNSVDQYDQPQQQQHQPQQQSTNPTL-VAAQQQQSHHSLLNNNASN 382
>HYAL_STRPU (O76536) Hyalin (Fragment)| Length = 1200 Score = 32.3 bits (72), Expect = 1.1 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = +3 Query: 249 LMAHSSRIEANFLNGAASSSTIAFLITGLNL-PCLLSTSINAVSAVPPTVHCSTGAAR 419 L+ +S +F G S + I +G N PC + INAV PPTV+C+ A+ Sbjct: 756 LVTRTSAPGDSFPVGTTSVTYIFTDASGNNAQPCTFNVVINAVDTTPPTVNCANNIAQ 813 Score = 30.0 bits (66), Expect = 5.3 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 342 PCLLSTSINAVSAVPPTVHCSTGAAR 419 PC + +I+AV PPTV+C A+ Sbjct: 704 PCTFTVTISAVDTTPPTVNCINNVAQ 729
>NU1M_PANTR (Q9T9W3) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.6 bits (70), Expect = 1.8 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = +3 Query: 114 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 281 +E K ST LYI+AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLL--FILATSSLAVYS 115 Query: 282 FL-NGAASSSTIAFL 323 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>NU1M_HUMAN (P03886) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.6 bits (70), Expect = 1.8 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = +3 Query: 114 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 281 +E K ST LYI+AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPATSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLL--FILATSSLAVYS 115 Query: 282 FL-NGAASSSTIAFL 323 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>NU1M_GORGO (Q9T9Z0) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.6 bits (70), Expect = 1.8 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = +3 Query: 114 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 281 +E K ST LYI+AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLL--FILATSSLAVYS 115 Query: 282 FL-NGAASSSTIAFL 323 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>NU1M_LEMCA (O78696) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.2 bits (69), Expect = 2.4 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Frame = +3 Query: 114 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 281 +E + + S+S+LY AP+ + + W LP PL M GL+ F++A SS + Sbjct: 58 KEPLRPLTSSSSLYTIAPTLALTIALVTWIPLPLPYPLINMNMGLL--FILATSSLAVYS 115 Query: 282 FL-NGAASSSTIAFL 323 L +G AS+S A + Sbjct: 116 ILWSGWASNSKYALI 130
>HYAL_LYTVA (O96530) Hyalin (Fragment)| Length = 530 Score = 30.8 bits (68), Expect = 3.1 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +3 Query: 342 PCLLSTSINAVSAVPPTVHCSTGAARL 422 PC+ + ++N V PPTV+C + R+ Sbjct: 477 PCVFTITVNTVDTTPPTVNCVSDVVRV 503
>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)| Length = 1206 Score = 30.0 bits (66), Expect = 5.3 Identities = 22/72 (30%), Positives = 31/72 (43%) Frame = +2 Query: 203 SRAAELDGTGADVSVLDGPFIPHRGKLLKWRSIKLNHSLLDHWLELAMPPLNIHQRSQCS 382 SR + GTG ++ KL K S+ NH + PP NI+Q S + Sbjct: 142 SRGVTIGGTGGNIR-----------KLTKVSSLTSNHHFA-----VCYPPSNIYQNSNNA 185 Query: 383 SSNSPLFHRSSQ 418 SNS L +S+ Sbjct: 186 GSNSALQRTTSE 197
>YWCA_BACSU (P39599) Putative symporter ywcA| Length = 516 Score = 29.6 bits (65), Expect = 6.9 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -3 Query: 484 LGYGAGALLQFGKTGLISSVGNLAAPVEQWTVGGTALTALM 362 LG+GA A + F GN+AAP+ +GG L A + Sbjct: 288 LGFGAAAFVGFDAITAADQAGNMAAPLLAKALGGDFLFAFV 328
>POLG_TBEVH (Q01299) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3414 Score = 29.3 bits (64), Expect = 9.1 Identities = 9/21 (42%), Positives = 17/21 (80%) Frame = +2 Query: 239 VSVLDGPFIPHRGKLLKWRSI 301 V +LD PF+ ++GK+++WR + Sbjct: 3328 VWILDNPFMQNKGKVMEWRDV 3348 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,200,699 Number of Sequences: 219361 Number of extensions: 1913772 Number of successful extensions: 6426 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 6110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6419 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
