ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19p06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NUCM_TRYBB (P21301) NADH-ubiquinone oxidoreductase 49 kDa subuni... 28 8.9

>NUCM_TRYBB (P21301) NADH-ubiquinone oxidoreductase 49 kDa subunit homolog (EC|
           1.6.5.3) (NADH dehydrogenase subunit 7 homolog)
          Length = 386

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 18/53 (33%), Positives = 21/53 (39%)
 Frame = -2

Query: 171 LHLCGIVLFXHLELVFVGTRGYHGYKLCCLFVCLGMCWICTAFVCRHVXSMLC 13
           L L G+  F   +LVF    G        L   LGM W C  F C  +  M C
Sbjct: 201 LRLRGLSFFDLYDLVFNSLSGV-------LSRSLGMVWDCRLFSCYELYFMFC 246


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,037,139
Number of Sequences: 219361
Number of extensions: 403046
Number of successful extensions: 943
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 80,573,946
effective HSP length: 32
effective length of database: 73,554,394
effective search space used: 1765305456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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