ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19p05 |
|---|---|
| Clone Library Name | barley_pub |
>PT191_YEAST (Q02772) Protein PET191, mitochondrial precursor| Length = 108 Score = 44.3 bits (103), Expect = 2e-04 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Frame = -1 Query: 543 MSKSCKGLAMELVKCLSETDCVKVQKRPYKECAGEKAPN--ITSECVGLRETYFNCKRGQ 370 M SCK + CL + CV +++ +EC N + C+ + + +CKRG Sbjct: 1 MVASCKDQKKAVAICLQRSPCVMIERHNPQECLDNPELNKDLPELCIAQMKAFLDCKRGI 60 Query: 369 VDMRARIRGN 340 VDM R GN Sbjct: 61 VDMTKRFTGN 70
>WC11_BOVIN (P30205) Antigen WC1.1 precursor| Length = 1436 Score = 30.8 bits (68), Expect = 2.6 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = +2 Query: 83 YDQTIFFLSRRQWLGSNKEMHPLIDRNYSCAELVPV 190 Y++ + L++++ LGS +M + D NY AE VPV Sbjct: 1326 YEELDYLLTQKEGLGSPDQMTDVPDENYDDAEEVPV 1361
>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)| Length = 4684 Score = 29.3 bits (64), Expect = 7.5 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -3 Query: 541 VQVVQGASHGARQVPQRDRLRQGAEEAVQGVRRGEGAQHHQR 416 VQ + A+ RQV + +RL+Q AEE Q + + A R Sbjct: 2235 VQAEREAAQSRRQVEEAERLKQSAEEQAQARAQAQAAAEKLR 2276
>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) (SRECRP-1) Length = 866 Score = 28.9 bits (63), Expect = 9.7 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = -2 Query: 398 RPTSTAKGARLTCEPGYVGTR 336 +P + A+G LTCEPG+ GT+ Sbjct: 293 QPCTVAEGRCLTCEPGWNGTK 313
>MATK_PICSI (Q8MC55) Maturase K (Intron maturase)| Length = 515 Score = 28.9 bits (63), Expect = 9.7 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Frame = +2 Query: 62 KIAYKIHYDQTIFFLSRRQWLGSNKEMHPLIDRNY----SCAELVPVSYGEEKIHTN*IM 229 +I Y IH + I + R+W+G +HPL Y S L K++T + Sbjct: 150 RIPYSIHPE--ILVRTFRRWIGDAPSLHPLRSILYEYRNSSESLQRSIIVVPKVNTRFFL 207 Query: 230 ILWRSRVY 253 LW + VY Sbjct: 208 FLWNNYVY 215
>MATK_PICRU (O63071) Maturase K (Intron maturase)| Length = 515 Score = 28.9 bits (63), Expect = 9.7 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Frame = +2 Query: 62 KIAYKIHYDQTIFFLSRRQWLGSNKEMHPLIDRNY----SCAELVPVSYGEEKIHTN*IM 229 +I Y IH + I + R+W+G +HPL Y S L K++T + Sbjct: 150 RIPYSIHPE--ILVRTFRRWIGDAPSLHPLRSILYEYRNSSESLQRSIIVVPKVNTRFFL 207 Query: 230 ILWRSRVY 253 LW + VY Sbjct: 208 FLWNNYVY 215
>MATK_PICPU (Q7HEK3) Maturase K (Intron maturase)| Length = 515 Score = 28.9 bits (63), Expect = 9.7 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Frame = +2 Query: 62 KIAYKIHYDQTIFFLSRRQWLGSNKEMHPLIDRNY----SCAELVPVSYGEEKIHTN*IM 229 +I Y IH + I + R+W+G +HPL Y S L K++T + Sbjct: 150 RIPYSIHPE--ILVRTFRRWIGDAPSLHPLRSILYEYRNSSESLQRSIIVVPKVNTRFFL 207 Query: 230 ILWRSRVY 253 LW + VY Sbjct: 208 FLWNNYVY 215
>MATK_PICMX (Q6YP19) Maturase K (Intron maturase)| Length = 515 Score = 28.9 bits (63), Expect = 9.7 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Frame = +2 Query: 62 KIAYKIHYDQTIFFLSRRQWLGSNKEMHPLIDRNY----SCAELVPVSYGEEKIHTN*IM 229 +I Y IH + I + R+W+G +HPL Y S L K++T + Sbjct: 150 RIPYSIHPE--ILVRTFRRWIGDAPSLHPLRSILYEYRNSSESLQRSIIVVPKVNTRFFL 207 Query: 230 ILWRSRVY 253 LW + VY Sbjct: 208 FLWNNYVY 215
>MATK_PICMA (O63072) Maturase K (Intron maturase)| Length = 515 Score = 28.9 bits (63), Expect = 9.7 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Frame = +2 Query: 62 KIAYKIHYDQTIFFLSRRQWLGSNKEMHPLIDRNY----SCAELVPVSYGEEKIHTN*IM 229 +I Y IH + I + R+W+G +HPL Y S L K++T + Sbjct: 150 RIPYSIHPE--ILVRTFRRWIGDAPSLHPLRSILYEYRNSSESLQRSIIVVPKVNTRFFL 207 Query: 230 ILWRSRVY 253 LW + VY Sbjct: 208 FLWNNYVY 215
>MATK_PICGL (O63070) Maturase K (Intron maturase)| Length = 515 Score = 28.9 bits (63), Expect = 9.7 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Frame = +2 Query: 62 KIAYKIHYDQTIFFLSRRQWLGSNKEMHPLIDRNY----SCAELVPVSYGEEKIHTN*IM 229 +I Y IH + I + R+W+G +HPL Y S L K++T + Sbjct: 150 RIPYSIHPE--ILVRTFRRWIGDAPSLHPLRSILYEYRNSSESLQRSIIVVPKVNTRFFL 207 Query: 230 ILWRSRVY 253 LW + VY Sbjct: 208 FLWNNYVY 215
>MATK_PICEN (Q6YP18) Maturase K (Intron maturase)| Length = 515 Score = 28.9 bits (63), Expect = 9.7 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Frame = +2 Query: 62 KIAYKIHYDQTIFFLSRRQWLGSNKEMHPLIDRNY----SCAELVPVSYGEEKIHTN*IM 229 +I Y IH + I + R+W+G +HPL Y S L K++T + Sbjct: 150 RIPYSIHPE--ILVRTFRRWIGDAPSLHPLRSILYEYRNSSESLQRSIIVVPKVNTRFFL 207 Query: 230 ILWRSRVY 253 LW + VY Sbjct: 208 FLWNNYVY 215
>MATK_PICAB (Q6BDH5) Maturase K (Intron maturase)| Length = 515 Score = 28.9 bits (63), Expect = 9.7 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Frame = +2 Query: 62 KIAYKIHYDQTIFFLSRRQWLGSNKEMHPLIDRNY----SCAELVPVSYGEEKIHTN*IM 229 +I Y IH + I + R+W+G +HPL Y S L K++T + Sbjct: 150 RIPYSIHPE--ILVRTFRRWIGDAPSLHPLRSILYEYRNSSESLQRSIIVVPKVNTRFFL 207 Query: 230 ILWRSRVY 253 LW + VY Sbjct: 208 FLWNNYVY 215
>CPHA_CYAA5 (Q9KGY4) Cyanophycin synthetase (EC 6.-.-.-)| Length = 872 Score = 28.9 bits (63), Expect = 9.7 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +3 Query: 258 NTRWLVVTIRLQVSVG*GVHMHNINTPCSHVSGL 359 N W+ ++ R V +G GVH I S+ SG+ Sbjct: 178 NIPWMALSARAMVQLGYGVHQKRIQATLSNYSGI 211 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,075,163 Number of Sequences: 219361 Number of extensions: 1705711 Number of successful extensions: 3328 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3226 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3327 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
