ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19p04 |
|---|---|
| Clone Library Name | barley_pub |
>PRL1_ARATH (Q42384) PP1/PP2A phosphatases pleiotropic regulator PRL1| Length = 486 Score = 33.9 bits (76), Expect = 0.21 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = -3 Query: 322 AGWQLYRTPQKTSAVVRCIASDLDRKRICSGGRNGLLRLWDATTSI*HIT 173 A W+ YR Q VR +A D + C+G + +++WD T + +T Sbjct: 164 APWKNYRVIQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLT 213
>PRL2_ARATH (Q39190) PP1/PP2A phosphatases pleiotropic regulator PRL2| Length = 479 Score = 33.9 bits (76), Expect = 0.21 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = -3 Query: 322 AGWQLYRTPQKTSAVVRCIASDLDRKRICSGGRNGLLRLWDATTSI*HIT 173 A W+ YR Q VR +A D + C+G + +++WD T + +T Sbjct: 158 APWKNYRVLQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLT 207
>SIF2_YEAST (P38262) SIR4-interacting protein SIF2| Length = 535 Score = 31.2 bits (69), Expect = 1.4 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = -3 Query: 292 KTSAVVRCIASDLDRKRICSGGRNGLLRLWDATTSI*HITRIY 164 KT+ V C+A D I +G NG LRLW+ T ++ ++ + Sbjct: 218 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFH 260
>FBXW7_HUMAN (Q969H0) F-box/WD-repeat protein 7 (F-box and WD-40 domain protein| 7) (F-box protein FBX30) (hCdc4) (Archipelago homolog) (hAgo) (SEL-10) Length = 707 Score = 30.8 bits (68), Expect = 1.8 Identities = 23/88 (26%), Positives = 40/88 (45%) Frame = -3 Query: 454 HSASVLSISAGDHWLGIGAADNSMSLFHRPQERFGSFSNTGSKVAGWQLYRTPQKTSAVV 275 H+ V S D+ + G+ D ++ +++ + TG + T ++ V Sbjct: 420 HTGGVWSSQMRDNIIISGSTDRTLKVWN---------AETGECI------HTLYGHTSTV 464 Query: 274 RCIASDLDRKRICSGGRNGLLRLWDATT 191 RC+ L KR+ SG R+ LR+WD T Sbjct: 465 RCM--HLHEKRVVSGSRDATLRVWDIET 490
>FBXW7_MOUSE (Q8VBV4) F-box/WD-repeat protein 7 (F-box and WD-40 domain protein| 7) (F-box protein FBW7) (F-box protein Fbxw6) (F-box-WD40 repeat protein 6) (SEL-10) Length = 629 Score = 30.8 bits (68), Expect = 1.8 Identities = 23/88 (26%), Positives = 40/88 (45%) Frame = -3 Query: 454 HSASVLSISAGDHWLGIGAADNSMSLFHRPQERFGSFSNTGSKVAGWQLYRTPQKTSAVV 275 H+ V S D+ + G+ D ++ +++ + TG + T ++ V Sbjct: 342 HTGGVWSSQMRDNIIISGSTDRTLKVWN---------AETGECI------HTLYGHTSTV 386 Query: 274 RCIASDLDRKRICSGGRNGLLRLWDATT 191 RC+ L KR+ SG R+ LR+WD T Sbjct: 387 RCM--HLHEKRVVSGSRDATLRVWDIET 412
>SLP1_SCHPO (P78972) WD-repeat-containing protein slp1| Length = 488 Score = 30.4 bits (67), Expect = 2.3 Identities = 26/95 (27%), Positives = 44/95 (46%) Frame = -3 Query: 454 HSASVLSISAGDHWLGIGAADNSMSLFHRPQERFGSFSNTGSKVAGWQLYRTPQKTSAVV 275 H A V +S H L G+ R G+ + ++A Q+ T Q S+ V Sbjct: 262 HQARVGCLSWNRHVLSSGS-------------RSGAIHHHDVRIANHQI-GTLQGHSSEV 307 Query: 274 RCIASDLDRKRICSGGRNGLLRLWDATTSI*HITR 170 +A D ++ SGG + ++++WDA +SI T+ Sbjct: 308 CGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK 342
>YCW2_YEAST (P25382) Hypothetical WD-repeat protein YCR072C| Length = 515 Score = 30.4 bits (67), Expect = 2.3 Identities = 10/18 (55%), Positives = 16/18 (88%) Frame = -3 Query: 256 LDRKRICSGGRNGLLRLW 203 +D KR+CSGG++ ++RLW Sbjct: 496 VDGKRVCSGGKDKMVRLW 513
>PRP17_MOUSE (Q9DC48) Pre-mRNA-splicing factor PRP17 (Cell division cycle 40| homolog) Length = 579 Score = 29.6 bits (65), Expect = 4.0 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 3/94 (3%) Frame = -3 Query: 460 TLHSASVLSISAGDHWLGIGAADNSMSLFHRPQERFGSFSN---TGSKVAGWQLYRTPQK 290 ++HS +++S WL + DN + +F Q RF G VAG+ Sbjct: 460 SMHSMPAVTLSPNGKWLACQSMDNQILIF-GAQNRFRLNKKKIFKGHMVAGYACQ----- 513 Query: 289 TSAVVRCIASDLDRKRICSGGRNGLLRLWDATTS 188 + D + SG NG L +WD T+ Sbjct: 514 -------VDFSPDMSYVISGDGNGKLNIWDWKTT 540
>PRP17_HUMAN (O60508) Pre-mRNA-splicing factor PRP17 (hPRP17) (Cell division| cycle 40 homolog) (EH-binding protein 3) (Ehb3) Length = 579 Score = 29.6 bits (65), Expect = 4.0 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 3/94 (3%) Frame = -3 Query: 460 TLHSASVLSISAGDHWLGIGAADNSMSLFHRPQERFGSFSN---TGSKVAGWQLYRTPQK 290 ++HS +++S WL + DN + +F Q RF G VAG+ Sbjct: 460 SMHSMPAVTLSPNGKWLACQSMDNQILIF-GAQNRFRLNKKKIFKGHMVAGYACQ----- 513 Query: 289 TSAVVRCIASDLDRKRICSGGRNGLLRLWDATTS 188 + D + SG NG L +WD T+ Sbjct: 514 -------VDFSPDMSYVISGDGNGKLNIWDWKTT 540
>TRCB_XENLA (Q91854) Beta-TrCP (Beta-transducin repeat-containing protein)| Length = 518 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -3 Query: 280 VVRCIASDLDRKRICSGGRNGLLRLWDATTSI 185 +VRCI D KRI SG +G +++WD ++ Sbjct: 437 LVRCIR--FDNKRIVSGAYDGKIKVWDLVAAL 466
>THOC6_BRARE (Q5XJS5) THO complex subunit 6 homolog (WD-repeat protein 58)| Length = 323 Score = 29.6 bits (65), Expect = 4.0 Identities = 23/93 (24%), Positives = 42/93 (45%) Frame = -3 Query: 466 NLTLHSASVLSISAGDHWLGIGAADNSMSLFHRPQERFGSFSNTGSKVAGWQLYRTPQKT 287 +L + + + I+ D+ L +G DN++ H G+F S + G Y Sbjct: 107 SLEIPEINAMIINPKDNNLIVGGGDNNI---HIMDMETGTFK---SVLKGHTDY------ 154 Query: 286 SAVVRCIASDLDRKRICSGGRNGLLRLWDATTS 188 + C++ I SGG +G +R+WD+ T+ Sbjct: 155 ---IHCLSFKEREGEILSGGEDGAVRIWDSRTN 184
>LIN23_CAEEL (Q09990) F-box/WD-repeat protein lin-23 (Abnormal cell lineage| protein 23) Length = 665 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%) Frame = -3 Query: 352 GSFSNTGSKVAGWQLY-----RTPQKTSAVVRCIASDLDRKRICSGGRNGLLRLWDATTS 188 GS NT + W ++ R + +VRCI D KRI SG +G +++WD + Sbjct: 401 GSSDNT---IRLWDIHSGVCLRVLEGHEELVRCIR--FDEKRIVSGAYDGKIKVWDLQAA 455 Query: 187 I 185 + Sbjct: 456 L 456
>FBW1A_HUMAN (Q9Y297) F-box/WD-repeat protein 1A (F-box and WD-repeats protein| beta-TrCP) (E3RSIkappaB) (pIkappaBalpha-E3 receptor subunit) Length = 605 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -3 Query: 280 VVRCIASDLDRKRICSGGRNGLLRLWDATTSI 185 +VRCI D KRI SG +G +++WD ++ Sbjct: 508 LVRCIR--FDNKRIVSGAYDGKIKVWDLVAAL 537
>HETE1_PODAN (Q00808) Vegetatible incompatibility protein HET-E-1| Length = 1356 Score = 29.6 bits (65), Expect = 4.0 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 2/90 (2%) Frame = -3 Query: 454 HSASVLSI--SAGDHWLGIGAADNSMSLFHRPQERFGSFSNTGSKVAGWQLYRTPQKTSA 281 H +SVLS+ SA + G+ D ++ ++ + S TG++ T + Sbjct: 840 HGSSVLSVAFSADGQRVASGSDDKTIKIWD-------TASGTGTQ--------TLEGHGG 884 Query: 280 VVRCIASDLDRKRICSGGRNGLLRLWDATT 191 V +A DR+R+ SG + +++WDA + Sbjct: 885 SVWSVAFSPDRERVASGSDDKTIKIWDAAS 914
>WDR18_RAT (Q499N3) WD-repeat protein 18| Length = 431 Score = 29.3 bits (64), Expect = 5.2 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 6/86 (6%) Frame = -3 Query: 439 LSISAGDHWLGIGAADNSM---SLFHRPQERFGSFS---NTGSKVAGWQLYRTPQKTSAV 278 +++ +H++ G +D S+ L RP R SF NTG G + Sbjct: 221 VTMDLAEHYIFCGGSDGSIFQVDLCSRPGPREQSFQPEQNTGKVFKGHRNQ--------- 271 Query: 277 VRCIASDLDRKRICSGGRNGLLRLWD 200 V C++ D + SG + +RLWD Sbjct: 272 VTCLSVSTDGSILLSGSHDESVRLWD 297
>PKWA_THECU (P49695) Probable serine/threonine-protein kinase pkwA (EC| 2.7.11.1) Length = 742 Score = 29.3 bits (64), Expect = 5.2 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -3 Query: 277 VRCIASDLDRKRICSGGRNGLLRLWDATT 191 V +A D + SG R+G +RLWD T Sbjct: 588 VYAVAFSPDGSMVASGSRDGTIRLWDVAT 616
>FBW1B_HUMAN (Q9UKB1) F-box/WD-repeat protein 11 (F-box/WD-repeat protein 1B)| (F-box and WD-repeats protein beta-TrCP2) Length = 542 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -3 Query: 280 VVRCIASDLDRKRICSGGRNGLLRLWDATTSI 185 +VRCI D KRI SG +G +++WD ++ Sbjct: 445 LVRCIR--FDNKRIVSGAYDGKIKVWDLQAAL 474
>GLE2_YEAST (P40066) Nucleoporin GLE2 (Nuclear pore protein GLE2) (poly(A) RNA| export protein RAE1) Length = 365 Score = 28.9 bits (63), Expect = 6.8 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 7/83 (8%) Frame = -3 Query: 427 AGDHWLGIGAADNSMSLFHRPQERFG-SFSNTGSKVAGWQLY------RTPQKTSAVVRC 269 A D + A D+ + PQ+ F S S+ KV W + R ++S+ V C Sbjct: 26 ANDIVINSPAEDSISDIAFSPQQDFMFSASSWDGKVRIWDVQNGVPQGRAQHESSSPVLC 85 Query: 268 IASDLDRKRICSGGRNGLLRLWD 200 D ++ SGG + L+L+D Sbjct: 86 TRWSNDGTKVASGGCDNALKLYD 108
>WDR31_HUMAN (Q8NA23) WD-repeat protein 31| Length = 367 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%) Frame = -3 Query: 316 WQLYRTPQKT------SAVVRCIASDLDRKRICSGGRNGLLRLWDATT 191 W L+ + Q + VV +A D ++C+G R+ L LWD T Sbjct: 130 WDLHGSSQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVT 177
>THOC6_HUMAN (Q86W42) THO complex subunit 6 homolog (WD-repeat protein 58)| Length = 341 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -3 Query: 277 VRCIASDLDRKRICSGGRNGLLRLWDATTS 188 + C+A + SGG +G +RLWD T+ Sbjct: 171 IHCLALRERSPEVLSGGEDGAVRLWDLRTA 200
>TBB5_ECTVR (P30156) Tubulin beta-5 chain (Beta-5 tubulin)| Length = 447 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/49 (30%), Positives = 22/49 (44%) Frame = +2 Query: 146 ISLHKHIYPSNVLNTCGSIPQPKKSVPATTAYSFPIQVRCYTSHHCRCF 292 IS + YP V++T IP PK S Y+ + V + +CF Sbjct: 152 ISKVREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCF 200
>GBLP_LEIMA (Q25306) Guanine nucleotide-binding protein beta subunit-like| protein (Antigen LACK) Length = 312 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = -3 Query: 352 GSFSNTGS--KVAGWQLYRTPQKTSAVVRCIASDLDRKRICSGGRNGLLRLWDATT 191 GS+ NT V G + RT + S V + D SGG++G LWD +T Sbjct: 170 GSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLST 225
>GBLP_LEIIN (P62884) Guanine nucleotide-binding protein beta subunit-like| protein (Antigen LACK) (LiP36) (p36Li) Length = 312 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = -3 Query: 352 GSFSNTGS--KVAGWQLYRTPQKTSAVVRCIASDLDRKRICSGGRNGLLRLWDATT 191 GS+ NT V G + RT + S V + D SGG++G LWD +T Sbjct: 170 GSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLST 225
>GBLP_LEICH (P62883) Guanine nucleotide-binding protein beta subunit-like| protein (Antigen LACK) Length = 312 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = -3 Query: 352 GSFSNTGS--KVAGWQLYRTPQKTSAVVRCIASDLDRKRICSGGRNGLLRLWDATT 191 GS+ NT V G + RT + S V + D SGG++G LWD +T Sbjct: 170 GSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLST 225
>VENV_MCV2 (P25392) Major envelope protein (43 kDa protein) (p43K)| Length = 388 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Frame = -3 Query: 454 HSASVLSISA--GDHWLGIGAADNSMSLFHRPQERFGSFSNT 335 H + V S++A G H LG+G AD S+ +F P + + +NT Sbjct: 275 HRSDVFSLAAVKGLHELGVGHADISVRVFAIPGAKGDAINNT 316
>TBB_THAWE (Q9LKI8) Tubulin beta chain (Beta tubulin)| Length = 443 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/49 (30%), Positives = 22/49 (44%) Frame = +2 Query: 146 ISLHKHIYPSNVLNTCGSIPQPKKSVPATTAYSFPIQVRCYTSHHCRCF 292 IS + YP V++T IP PK S Y+ + V + +CF Sbjct: 152 ISKIREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCF 200
>PLRG1_RAT (Q9WUC8) Pleiotropic regulator 1| Length = 514 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -3 Query: 316 WQLYRTPQKTSAVVRCIASDLDRKRICSGGRNGLLRLWD 200 W+LYR VRCIA + + +G + +++WD Sbjct: 194 WKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWD 232
>PLRG1_MOUSE (Q922V4) Pleiotropic regulator 1| Length = 513 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -3 Query: 316 WQLYRTPQKTSAVVRCIASDLDRKRICSGGRNGLLRLWD 200 W+LYR VRCIA + + +G + +++WD Sbjct: 193 WKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWD 231
>PLRG1_HUMAN (O43660) Pleiotropic regulator 1| Length = 514 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -3 Query: 316 WQLYRTPQKTSAVVRCIASDLDRKRICSGGRNGLLRLWD 200 W+LYR VRCIA + + +G + +++WD Sbjct: 194 WKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWD 232
>CBLN4_HUMAN (Q9NTU7) Cerebellin-4 precursor (Cerebellin-like glycoprotein 1)| Length = 201 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = -3 Query: 466 NLTLHSASVLSISAGDHWLGIGAADNSMSLFHRPQERFGSFSNTGSKVAGWQ 311 NL L+ V+S AGD + AA N + L+ +++ G+ V GWQ Sbjct: 138 NLMLNGKPVISAFAGDKDVTREAATNGVLLYLDKEDKVYLKLEKGNLVGGWQ 189
>UDA1_HUMAN (Q9Y4X1) UDP-glucuronosyltransferase 2A1 precursor (EC 2.4.1.17)| Length = 527 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%) Frame = +2 Query: 173 SNVLNTCGSIPQPKKSVPA-----TTAYSFPIQVRCYTSHHCRCFL 295 S V CG +P P VPA T SF ++R + S+H + ++ Sbjct: 177 STVEKHCGKVPYPPSYVPAVLSELTDQMSFTDRIRNFISYHLQDYM 222
>NLE1_MOUSE (Q8VEJ4) Notchless homolog 1| Length = 484 Score = 28.5 bits (62), Expect = 8.9 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Frame = -3 Query: 403 GAADNSMSLFHRPQERFGSFSNTGSKVAGWQLY-RTPQKTSAVVR----CIASDLDRKRI 239 G ++ +S+ P ++ + + + V W L TP T R I+ D K++ Sbjct: 111 GHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKL 170 Query: 238 CSGGRNGLLRLWDATTSI 185 SG +NG + LWD +T + Sbjct: 171 ASGCKNGQILLWDPSTGL 188 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,580,154 Number of Sequences: 219361 Number of extensions: 1455983 Number of successful extensions: 3989 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3790 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3987 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
