ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19p01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009545.1| Triticum aestivum clone wr1.pk148.e12:fis, full i... 422 e-115
2ref|XM_470138.1| Oryza sativa (japonica cultivar-group), mRNA 96 2e-16
3dbj|AK105744.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 2e-16
4dbj|AK058941.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 2e-16
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 64 6e-07
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
7gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 64 6e-07
8ref|XM_470137.1| Oryza sativa (japonica cultivar-group), mRNA 60 9e-06
9gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putativ... 60 9e-06
10gb|BT016543.1| Zea mays clone Contig376 mRNA sequence 56 1e-04
11gb|BT018082.1| Zea mays clone EL01N0552A09.c mRNA sequence 56 1e-04
12emb|X97726.1|ZMABP3 Z.mays ZmABP3 mRNA for actin depolymerizing ... 56 1e-04
13gb|AY112267.1| Zea mays CL5157_2 mRNA sequence 56 1e-04
14gb|AY103749.1| Zea mays PCO115125 mRNA sequence 56 1e-04
15emb|X80820.1|ZMABP1F Z.mays ABP1 mRNA for actin-depolymerizing f... 54 5e-04
16emb|X97725.1|ZMABP2 Z.mays ZmABP2 mRNA for actin depolymerizing ... 54 5e-04
17gb|AY104025.1| Zea mays PCO095832 mRNA sequence 54 5e-04
18ref|XM_473455.1| Oryza sativa (japonica cultivar-group), predic... 46 0.13
19dbj|AK069329.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
20gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 44 0.53
21ref|XM_590941.2| PREDICTED: Bos taurus similar to Nucleolar phos... 42 2.1
22gb|AC115883.13| Mus musculus chromosome 3, clone RP24-376N4, com... 42 2.1
23ref|XM_478113.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.2
24ref|XM_367913.1| Magnaporthe grisea 70-15 chromosome III hypothe... 40 8.2
25gb|AC124549.5| Mus musculus BAC clone RP23-284E24 from 13, compl... 40 8.2
26emb|AL359376.22| Human DNA sequence from clone RP11-366K17 on ch... 40 8.2
27gb|AC090208.4| Homo sapiens chromosome 18, clone RP11-660C14, co... 40 8.2
28gb|AC090340.6| Homo sapiens chromosome 18, clone RP11-714M23, co... 40 8.2
29gb|AC068907.53| Mus musculus strain C57BL/6J clone rp23-347f7 ma... 40 8.2
30gb|AC021513.9| Homo sapiens chromosome 17, clone RP11-281G10, co... 40 8.2
31dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
32gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer... 40 8.2
33dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
34dbj|AK072662.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.2
35gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 8.2
36gb|AC006079.1|AC006079 Homo sapiens chromosome 17, clone hRPK.85... 40 8.2
37emb|BX072552.10| Mouse DNA sequence from clone RP23-147I24 on ch... 40 8.2
38emb|BX004970.8| Zebrafish DNA sequence from clone DKEY-9I4, comp... 40 8.2
39gb|U58278.1|TAU58278 Triticum aestivum actin-binding protein WCO... 40 8.2
40emb|AL954307.7| Zebrafish DNA sequence from clone CH211-201C19, ... 40 8.2
41gb|AC003971.1|AC003971 Human BAC 367D17 from chromosome 18, comp... 40 8.2
42emb|AL451009.3| Human DNA sequence from clone RP11-440G22 on chr... 40 8.2 
>gb|BT009545.1| Triticum aestivum clone wr1.pk148.e12:fis, full insert mRNA
           sequence
          Length = 2114

 Score =  422 bits (213), Expect = e-115
 Identities = 302/324 (93%), Gaps = 7/324 (2%)
 Strand = Plus / Plus

                                                                       
Query: 281 tagtgtgcgcgctccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatc 340
           ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 288 tagtgcgcgcgctccttgatcacgtcgaggctcatttcgctggggtcggtggcctgcatc 347

                                                                       
Query: 341 tcgatctggatgcccgtccagggtcctcttgaacttctcgttggtgctttgcgtacgtca 400
           |||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 348 tcgatctggatgcc-gtccagggtcctcttgaacttctcgttggtgctc-gcgtacgtca 405

                                                                       
Query: 401 tcttgctcctcaactttgcggtgtctggggaccagaagatatagaagatcctgctctttg 460
           |||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 406 tcttgctcctcacctttgccgtgtcgggggaccagaagatatagaagatcctgctctttg 465

                                                                       
Query: 461 gcacatcctccgggggtgggtgaagtccgaagtcaaacactgcgaatcggcagtcgtttt 520
           |||||||||||||||   |||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 466 gcacatcctccgggg--tggtgaagt-cgaagtcaaacactgcgaatcggcagtcgttct 522

                                                                       
Query: 521 caggggagggtcttggtgaaatcctcataggtggcatcgcgctgcccggtttggtccaca 580
           || ||||||||||||||||| ||||||||||| || || |||| ||| ||||||||||||
Sbjct: 523 ca-gggagggtcttggtgaagtcctcataggttgcctcacgctccccagtttggtccaca 581

                                   
Query: 581 atgacctcctttctggttctccag 604
           ||||||||| ||||||||||||||
Sbjct: 582 atgacctcc-ttctggttctccag 604



 Score =  145 bits (73), Expect = 2e-31
 Identities = 76/77 (98%)
 Strand = Plus / Plus

                                                                       
Query: 139 ctttcgacacggtaacaaagccacaaatcatcaagaaagtttcaagagtcacaccgccaa 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ctttcgacacggtaacaaagccacaaatcatcaagaaagtttcaagagtcacaccgccaa 237

                            
Query: 199 atctataattgacataa 215
           ||||||| |||||||||
Sbjct: 238 atctatatttgacataa 254



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 90/104 (86%), Gaps = 6/104 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttaattatttataaccgnaacttggaagaa-----cagtgcagcagcataacgcccg 55
           |||||||||||||||||||| ||||||||||||     |||||||||||||||| |||||
Sbjct: 36  catttaattatttataaccgtaacttggaagaacagtgcagtgcagcagcataaggcccg 95

                                                       
Query: 56  gcatataaatgggcagcggaagaaggaacggattacatgataga 99
           |||||| ||||||||   ||| || |||| ||||||||||||||
Sbjct: 96  gcatatcaatgggcacaagaa-aaagaacagattacatgataga 138
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>ref|XM_470138.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 778

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                       
Query: 399 catcttgctcctcaactttgcggtgtctggggaccagaagatatagaagatcctgctctt 458
           ||||||||||||||  |||||  ||||||||||||| ||||||||||| |||||||||||
Sbjct: 438 catcttgctcctcacttttgcattgtctggggaccataagatatagaatatcctgctctt 379

                       
Query: 459 tggcacatcctc 470
           ||||||||||||
Sbjct: 378 tggcacatcctc 367
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>dbj|AK105744.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B04, full
            insert sequence
          Length = 2390

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                        
Query: 399  catcttgctcctcaactttgcggtgtctggggaccagaagatatagaagatcctgctctt 458
            ||||||||||||||  |||||  ||||||||||||| ||||||||||| |||||||||||
Sbjct: 2047 catcttgctcctcacttttgcattgtctggggaccataagatatagaatatcctgctctt 1988

                        
Query: 459  tggcacatcctc 470
            ||||||||||||
Sbjct: 1987 tggcacatcctc 1976
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>dbj|AK058941.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-H02, full
           insert sequence
          Length = 758

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                       
Query: 399 catcttgctcctcaactttgcggtgtctggggaccagaagatatagaagatcctgctctt 458
           ||||||||||||||  |||||  ||||||||||||| ||||||||||| |||||||||||
Sbjct: 420 catcttgctcctcacttttgcattgtctggggaccataagatatagaatatcctgctctt 361

                       
Query: 459 tggcacatcctc 470
           ||||||||||||
Sbjct: 360 tggcacatcctc 349
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                        
Query: 431      accagaagatatagaagatcctgctctttggcacatcctc 470
                |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 34129842 accataagatatagaatatcctgctctttggcacatcctc 34129803



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                          
Query: 293      tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctgga 350
                ||||||| |||||| ||| |||  ||||||||||||||||||||||  ||||||||||
Sbjct: 34127301 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctgga 34127244
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                        
Query: 431      accagaagatatagaagatcctgctctttggcacatcctc 470
                |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 34220314 accataagatatagaatatcctgctctttggcacatcctc 34220275



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                          
Query: 293      tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctgga 350
                ||||||| |||||| ||| |||  ||||||||||||||||||||||  ||||||||||
Sbjct: 34217773 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctgga 34217716
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>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
             sequence
          Length = 163828

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                     
Query: 431   accagaagatatagaagatcctgctctttggcacatcctc 470
             |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 93654 accataagatatagaatatcctgctctttggcacatcctc 93615



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 293   tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctgga 350
             ||||||| |||||| ||| |||  ||||||||||||||||||||||  ||||||||||
Sbjct: 91113 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctgga 91056
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>ref|XM_470137.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 703

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                     
Query: 293 tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctgga 350
           ||||||| |||||| ||| |||  ||||||||||||||||||||||  ||||||||||
Sbjct: 533 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctgga 476
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>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier,
              hypothetical protein, putative NAM protein, putative
              cis-zeatin O-glucosyltransferases, putative small nuclear
              ribonucleoprotein, putative cis-zeatin
              O-glucosyltransferase, putative glutathione peroxidase,
              putative copper-exporting ATPases, putative
              serine/threonine dehydratase, and putative actin
              depolymerizing factor genes, complete cds; and hypothetical
              protein gene, partial cds
          Length = 157237

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 107/130 (82%), Gaps = 2/130 (1%)
 Strand = Plus / Minus

                                                                          
Query: 304    gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgcccgtccaggg 363
              ||||| ||| || |||||||||||||||||||||| ||| | ||||||| ||||||||  
Sbjct: 148416 gtccatgctcatctcgctggggtcggtggcctgcagctccacctggatg-ccgtccagct 148358

                                                                          
Query: 364    tcctcttgaacttctcgttggtgctttgcgtacgtcatcttgctcctcaactttgcggtg 423
               ||||||||||   || |||| || | ||||||  |||||||||||||| ||| | ||||
Sbjct: 148357 ccctcttgaaccggtccttggagc-tcgcgtacagcatcttgctcctcaccttcgaggtg 148299

                        
Query: 424    tctggggacc 433
              || |||||||
Sbjct: 148298 tccggggacc 148289
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>gb|BT016543.1| Zea mays clone Contig376 mRNA sequence
          Length = 881

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                       
Query: 399 catcttgctcctcaactttgcggtgtctggggaccagaagatatagaagatcctgctctt 458
           |||||||||| ||| ||| |||| |  ||||||||| | |||||||||||||||||||||
Sbjct: 473 catcttgctcttcaccttggcggaggatggggaccataggatatagaagatcctgctctt 414
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>gb|BT018082.1| Zea mays clone EL01N0552A09.c mRNA sequence
          Length = 837

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                       
Query: 399 catcttgctcctcaactttgcggtgtctggggaccagaagatatagaagatcctgctctt 458
           |||||||||| ||| ||| |||| |  ||||||||| | |||||||||||||||||||||
Sbjct: 446 catcttgctcttcaccttggcggaggatggggaccataggatatagaagatcctgctctt 387
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>emb|X97726.1|ZMABP3 Z.mays ZmABP3 mRNA for actin depolymerizing factor
          Length = 801

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                       
Query: 399 catcttgctcctcaactttgcggtgtctggggaccagaagatatagaagatcctgctctt 458
           |||||||||| ||| ||| |||| |  ||||||||| | |||||||||||||||||||||
Sbjct: 447 catcttgctcttcaccttggcggaggatggggaccataggatatagaagatcctgctctt 388
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>gb|AY112267.1| Zea mays CL5157_2 mRNA sequence
          Length = 779

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 304 gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccc 355
           ||||| ||| || |||||||||||||||||||||| ||| | ||||||||||
Sbjct: 421 gtccatgctcatctcgctggggtcggtggcctgcagctccagctggatgccc 472
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>gb|AY103749.1| Zea mays PCO115125 mRNA sequence
          Length = 965

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                       
Query: 399 catcttgctcctcaactttgcggtgtctggggaccagaagatatagaagatcctgctctt 458
           |||||||||| ||| ||| |||| |  ||||||||| | |||||||||||||||||||||
Sbjct: 496 catcttgctcttcaccttggcggaggatggggaccataggatatagaagatcctgctctt 437
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>emb|X80820.1|ZMABP1F Z.mays ABP1 mRNA for actin-depolymerizing factor
          Length = 589

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 308 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgcc 354
           ||||| || |||||||||||||||||||| ||||||  |||||||||
Sbjct: 474 aggctcatctcgctggggtcggtggcctggatctcgcactggatgcc 428
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>emb|X97725.1|ZMABP2 Z.mays ZmABP2 mRNA for actin depolymerizing factor
          Length = 546

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 308 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgcc 354
           ||||| || |||||||||||||||||||| ||||||  |||||||||
Sbjct: 411 aggctcatctcgctggggtcggtggcctggatctcgcactggatgcc 365
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>gb|AY104025.1| Zea mays PCO095832 mRNA sequence
          Length = 894

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 308 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgcc 354
           ||||| || |||||||||||||||||||| ||||||  |||||||||
Sbjct: 460 aggctcatctcgctggggtcggtggcctggatctcgcactggatgcc 414
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>ref|XM_473455.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 420

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 124/155 (80%), Gaps = 2/155 (1%)
 Strand = Plus / Minus

                                                                       
Query: 304 gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgcccgtccaggg 363
           ||||| ||| || |||||||| ||||| ||||||| ||| | |||||| |||||||||  
Sbjct: 396 gtccatgctcatctcgctgggatcggtcgcctgcagctccacctggat-cccgtccagct 338

                                                                       
Query: 364 tcctcttgaacttctcgttggtgctttgcgtacgtcatcttgctcctcaactttgcggtg 423
            ||||||||||   || |||| |||  ||||||  |||||||||||||| ||| |  |||
Sbjct: 337 ccctcttgaaccggtccttggagctc-gcgtacagcatcttgctcctcaccttcgacgtg 279

                                              
Query: 424 tctggggaccagaagatatagaagatcctgctctt 458
           || || |||||| ||||  |||||||| |||||||
Sbjct: 278 tccggcgaccaggagatgaagaagatcttgctctt 244
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>dbj|AK069329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018P16, full
           insert sequence
          Length = 778

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 124/155 (80%), Gaps = 2/155 (1%)
 Strand = Plus / Minus

                                                                       
Query: 304 gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgcccgtccaggg 363
           ||||| ||| || |||||||| ||||| ||||||| ||| | |||||| |||||||||  
Sbjct: 482 gtccatgctcatctcgctgggatcggtcgcctgcagctccacctggat-cccgtccagct 424

                                                                       
Query: 364 tcctcttgaacttctcgttggtgctttgcgtacgtcatcttgctcctcaactttgcggtg 423
            ||||||||||   || |||| |||  ||||||  |||||||||||||| ||| |  |||
Sbjct: 423 ccctcttgaaccggtccttggagctc-gcgtacagcatcttgctcctcaccttcgacgtg 365

                                              
Query: 424 tctggggaccagaagatatagaagatcctgctctt 458
           || || |||||| ||||  |||||||| |||||||
Sbjct: 364 tccggcgaccaggagatgaagaagatcttgctctt 330
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 304     gtccaggctgatttcgctggggtcgg 329
               |||| |||||||||||||||||||||
Sbjct: 4866116 gtcccggctgatttcgctggggtcgg 4866091
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>ref|XM_590941.2| PREDICTED: Bos taurus similar to Nucleolar phosphoprotein p130
            (Nucleolar 130 kDa protein) (140 kDa nucleolar
            phosphoprotein) (Nopp140) (Nucleolar and coiled-body
            phosphoprotein 1) (LOC513278), mRNA
          Length = 3017

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 520  tcaggggagggtcttggtgaa 540
            |||||||||||||||||||||
Sbjct: 2352 tcaggggagggtcttggtgaa 2372
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>gb|AC115883.13| Mus musculus chromosome 3, clone RP24-376N4, complete sequence
          Length = 180645

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 359    cagggtcctcttgaacttctc 379
              |||||||||||||||||||||
Sbjct: 138047 cagggtcctcttgaacttctc 138067
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>ref|XM_478113.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 884

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 308 aggctgatttcgctggggtcggtggcctgcatctcg 343
           ||||| || ||||||||||| |||||||| ||||||
Sbjct: 463 aggctcatctcgctggggtctgtggcctgaatctcg 428
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>ref|XM_367913.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
           (MG07817.4) partial mRNA
          Length = 1806

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 510 gcagtcgttttcaggggagggtcttggt 537
           |||||||||||||||||| || ||||||
Sbjct: 165 gcagtcgttttcaggggatgggcttggt 138
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>gb|AC124549.5| Mus musculus BAC clone RP23-284E24 from 13, complete sequence
          Length = 199240

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 539    aaatcctcataggtggcatc 558
              ||||||||||||||||||||
Sbjct: 129508 aaatcctcataggtggcatc 129527
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>emb|AL359376.22| Human DNA sequence from clone RP11-366K17 on chromosome 1, complete
             sequence
          Length = 46975

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   gtcatcttgctcctcaactt 416
             ||||||||||||||||||||
Sbjct: 28621 gtcatcttgctcctcaactt 28602
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>gb|AC090208.4| Homo sapiens chromosome 18, clone RP11-660C14, complete sequence
          Length = 200979

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    ctataattgacataataaat 220
              ||||||||||||||||||||
Sbjct: 200019 ctataattgacataataaat 200000
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>gb|AC090340.6| Homo sapiens chromosome 18, clone RP11-714M23, complete sequence
          Length = 170969

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    ctataattgacataataaat 220
              ||||||||||||||||||||
Sbjct: 127777 ctataattgacataataaat 127796
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>gb|AC068907.53| Mus musculus strain C57BL/6J clone rp23-347f7 map 13, complete sequence
          Length = 232472

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 539   aaatcctcataggtggcatc 558
             ||||||||||||||||||||
Sbjct: 51767 aaatcctcataggtggcatc 51786
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>gb|AC021513.9| Homo sapiens chromosome 17, clone RP11-281G10, complete sequence
          Length = 176169

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 400    atcttgctcctcaactttgc 419
              ||||||||||||||||||||
Sbjct: 136964 atcttgctcctcaactttgc 136945
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 308      aggctgatttcgctggggtcggtggcctgcatctcg 343
                ||||| || ||||||||||| |||||||| ||||||
Sbjct: 17688290 aggctcatctcgctggggtctgtggcctgaatctcg 17688255
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>gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177503

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 197    aaatctataattgacataataaat 220
              |||||||||||||||||| |||||
Sbjct: 150960 aaatctataattgacatactaaat 150937
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>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_F08
          Length = 134988

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 308   aggctgatttcgctggggtcggtggcctgcatctcg 343
             ||||| || ||||||||||| |||||||| ||||||
Sbjct: 92323 aggctcatctcgctggggtctgtggcctgaatctcg 92288
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>dbj|AK072662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134C12, full
           insert sequence
          Length = 884

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 308 aggctgatttcgctggggtcggtggcctgcatctcg 343
           ||||| || ||||||||||| |||||||| ||||||
Sbjct: 463 aggctcatctcgctggggtctgtggcctgaatctcg 428
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 197     aaatctataattgacataataaat 220
               |||||||||||||| |||||||||
Sbjct: 2915373 aaatctataattgaaataataaat 2915396
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>gb|AC006079.1|AC006079 Homo sapiens chromosome 17, clone hRPK.855_D_21, complete sequence
          Length = 178109

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 400    atcttgctcctcaactttgc 419
              ||||||||||||||||||||
Sbjct: 142444 atcttgctcctcaactttgc 142425
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>emb|BX072552.10| Mouse DNA sequence from clone RP23-147I24 on chromosome X, complete
             sequence
          Length = 160230

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   caaatctataattgacataa 215
             ||||||||||||||||||||
Sbjct: 31926 caaatctataattgacataa 31945
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>emb|BX004970.8| Zebrafish DNA sequence from clone DKEY-9I4, complete sequence
          Length = 246777

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   ttggatggatggttggtttg 274
             ||||||||||||||||||||
Sbjct: 93043 ttggatggatggttggtttg 93024
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>gb|U58278.1|TAU58278 Triticum aestivum actin-binding protein WCOR719 (Wcor719) mRNA,
           complete cds
          Length = 648

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 317 tcgctggggtcggtggcctgcatctcgatctg 348
           ||||||| ||||||||||||||  ||||||||
Sbjct: 470 tcgctggcgtcggtggcctgcacgtcgatctg 439
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>emb|AL954307.7| Zebrafish DNA sequence from clone CH211-201C19, complete sequence
          Length = 175575

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    tggatggatggttggtttgc 275
              ||||||||||||||||||||
Sbjct: 130295 tggatggatggttggtttgc 130314
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>gb|AC003971.1|AC003971 Human BAC 367D17 from chromosome 18, complete sequence
          Length = 87978

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   ctataattgacataataaat 220
             ||||||||||||||||||||
Sbjct: 26898 ctataattgacataataaat 26917
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>emb|AL451009.3| Human DNA sequence from clone RP11-440G22 on chromosome 1, complete
             sequence
          Length = 68697

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   gtcatcttgctcctcaactt 416
             ||||||||||||||||||||
Sbjct: 21539 gtcatcttgctcctcaactt 21520


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,979,122
Number of Sequences: 3902068
Number of extensions: 4979122
Number of successful extensions: 89919
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89700
Number of HSP's gapped (non-prelim): 212
length of query: 604
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 581
effective length of database: 17,143,297,704
effective search space: 9960255966024
effective search space used: 9960255966024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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