ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19o20 |
|---|---|
| Clone Library Name | barley_pub |
>ASB8_MOUSE (Q91ZT9) Ankyrin repeat and SOCS box protein 8 (ASB-8)| Length = 288 Score = 31.6 bits (70), Expect = 2.1 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%) Frame = +2 Query: 392 SSKVWHVATSVQNRYSPVPSVYRTLYLLSCNSVPLPNYNRLILG----RCSHG 538 SS +W++ S+Q++YS + RT + + S P N LI G C+HG Sbjct: 2 SSSMWYIMQSIQSKYSLSERLIRT--IAAIRSFPHDNVEDLIRGGADVNCTHG 52
>ASB8_HUMAN (Q9H765) Ankyrin repeat and SOCS box protein 8 (ASB-8)| Length = 288 Score = 31.6 bits (70), Expect = 2.1 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%) Frame = +2 Query: 392 SSKVWHVATSVQNRYSPVPSVYRTLYLLSCNSVPLPNYNRLILG----RCSHG 538 SS +W++ S+Q++YS + RT + + S P N LI G C+HG Sbjct: 2 SSSMWYIMQSIQSKYSLSERLIRT--IAAIRSFPHDNVEDLIRGGADVNCTHG 52
>HTS1_COCCA (Q01886) HC-toxin synthetase (EC 6.3.2.-) (HTS)| Length = 5218 Score = 30.4 bits (67), Expect = 4.6 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = +3 Query: 264 HPETSAIVFKNGSDFLSSS----RLLIDHAVTHCTLDGTIFSSSRRRLPRSGMWPPPY 425 H I+ + GS + +S +L + +V DG++FSS+++ LP + PP + Sbjct: 4212 HERLEHIISETGSSVIVTSAAYSKLCLSLSVRGIVCDGSVFSSTKKPLPSTADSPPSF 4269
>MIAA_RICCN (Q92HW4) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 326 Score = 30.4 bits (67), Expect = 4.6 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 10/82 (12%) Frame = -2 Query: 547 DFTAMTAPAEDKSVIIGERNRVATEKIKGAINRGYRRIAV----------LYGGGHMPDL 398 +F +MT ED SVI + ++ATEKIK +RG I + ++G ++PD+ Sbjct: 82 NFLSMT---EDFSVI--KYLKLATEKIKEITDRGKLPILIGGTGLYINSLVFGYNNIPDI 136 Query: 397 GRRLREELNMVPSNVQWVTAWS 332 L+E++ + + + WS Sbjct: 137 SEDLQEQVRNLHVKIGNIELWS 158
>DMC1_MOUSE (Q61880) Meiotic recombination protein DMC1/LIM15 homolog| Length = 340 Score = 30.0 bits (66), Expect = 6.0 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = -2 Query: 616 LKALSKLDLGAALKIFLAKQLTSDFTA-MTAPAEDKSVIIGE-RNRVATEKIKGAINRGY 443 L L K+ + +F+ Q+T+D A MT A+ K I G +T +I RG Sbjct: 250 LSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGE 309 Query: 442 RRIAVLYGGGHMPD 401 RIA +Y MP+ Sbjct: 310 LRIAKIYDSPEMPE 323
>DMC1_HUMAN (Q14565) Meiotic recombination protein DMC1/LIM15 homolog| Length = 340 Score = 30.0 bits (66), Expect = 6.0 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = -2 Query: 616 LKALSKLDLGAALKIFLAKQLTSDFTA-MTAPAEDKSVIIGE-RNRVATEKIKGAINRGY 443 L L K+ + +F+ Q+T+D A MT A+ K I G +T +I RG Sbjct: 250 LSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGE 309 Query: 442 RRIAVLYGGGHMPD 401 RIA +Y MP+ Sbjct: 310 LRIAKIYDSPEMPE 323
>MURB_BORGA (Q660S4) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 306 Score = 30.0 bits (66), Expect = 6.0 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Frame = +3 Query: 147 PAKDTQFRLFSTRNSQNHRSTARTEEKMSKASVSYLFKGHP--ETSAIVFKNGSDFLSSS 320 P ++ F + T + + EEKM+K + + KGH +S FKN FL S Sbjct: 176 PFQNKNFFILKTELNLKKENKKIIEEKMNKNKQARINKGHYLFPSSGSTFKNNKSFLRPS 235 Query: 321 RLLIDHAVTHCTLDG 365 +I+ C L G Sbjct: 236 GQIIE----ECKLKG 246
>IDH3B_CAEEL (Q93353) Probable isocitrate dehydrogenase [NAD] subunit beta,| mitochondrial precursor (EC 1.1.1.41) (Isocitric dehydrogenase) (NAD(+)-specific ICDH) Length = 379 Score = 30.0 bits (66), Expect = 6.0 Identities = 26/79 (32%), Positives = 36/79 (45%) Frame = -2 Query: 502 IGERNRVATEKIKGAINRGYRRIAVLYGGGHMPDLGRRLREELNMVPSNVQWVTAWSIRS 323 IG N VA +KGAI AVL+ G + L RLR L++ + V T I++ Sbjct: 97 IGRNNNVA---LKGAIEES----AVLHTEGELQGLNMRLRRSLDLFANVVHIKTLDGIKT 149 Query: 322 RELDKKSLPFLKTMAEVSG 266 R K L F+ + G Sbjct: 150 RH--GKQLDFVIVREQTEG 166
>TRPA_AQUAE (O67502) Tryptophan synthase alpha chain (EC 4.2.1.20)| Length = 262 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 6/37 (16%) Frame = +3 Query: 219 EEKMSKASVSYLFKGHP--ETSAIVF----KNGSDFL 311 +EK KA VSYL G+P ETS F KNG+D L Sbjct: 12 KEKREKALVSYLMVGYPDYETSLKAFKEVLKNGTDIL 48
>HISZ_AGRT5 (Q8UHK2) ATP phosphoribosyltransferase regulatory subunit| Length = 375 Score = 29.6 bits (65), Expect = 7.9 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 10/85 (11%) Frame = -2 Query: 637 KQDGYPELKALSKLDLGAALKIFLAK----------QLTSDFTAMTAPAEDKSVIIGERN 488 ++ GY + S L++ L+ LA +L F A+ AP S ++G+ Sbjct: 216 QETGYSTNASRSPLEIARRLREKLALAATRLPDESFELLKQFLALQAPLPQASQVLGDFA 275 Query: 487 RVATEKIKGAINRGYRRIAVLYGGG 413 A K+ GA++ +R+A L G Sbjct: 276 ARAKLKLDGALSAFDKRVAALANAG 300
>MURG_PSEU2 (Q4ZNZ0) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 356 Score = 29.6 bits (65), Expect = 7.9 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 12/71 (16%) Frame = -2 Query: 439 RIAVLYGGGHMPDLGRRLREELNMVPSNVQ------------WVTAWSIRSRELDKKSLP 296 R+ VL G L + L E L+ +P ++Q VTA R+ ++ + P Sbjct: 181 RLLVLGGSLGAEPLNKLLPEALSQLPQDIQPEVFHQSGKNHDAVTAERYRNVGVEAQVAP 240 Query: 295 FLKTMAEVSGW 263 F++ MA+ GW Sbjct: 241 FIQNMAQAYGW 251
>PST1_YEAST (Q12355) Protoplast secreted protein 1 precursor| Length = 444 Score = 29.6 bits (65), Expect = 7.9 Identities = 21/71 (29%), Positives = 31/71 (43%) Frame = +3 Query: 108 LCQNGALN*SIQEPAKDTQFRLFSTRNSQNHRSTARTEEKMSKASVSYLFKGHPETSAIV 287 +C+NGA T +L ST SQ+ ++TA+ + SKA G + +A Sbjct: 350 VCKNGA---------SSTSVKLSSTSKSQSSQTTAKVSKSSSKAEEKKFTSGDIKAAASA 400 Query: 288 FKNGSDFLSSS 320 S SSS Sbjct: 401 SSVSSSGASSS 411 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,806,804 Number of Sequences: 219361 Number of extensions: 2026996 Number of successful extensions: 5686 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5522 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5682 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
