ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19o18 |
|---|---|
| Clone Library Name | barley_pub |
>PVH1_YEAST (Q02256) Tyrosine-protein phosphatase YVH1 (EC 3.1.3.48) (PTPase| YVH1) Length = 364 Score = 31.2 bits (69), Expect = 0.63 Identities = 21/71 (29%), Positives = 38/71 (53%) Frame = +2 Query: 125 LVSSLRAREKVPSAEELR*VTDSLYSPRNALKLKEPRSLVAPSTSLVCHSPSSRSTTSPA 304 LVS+ + S+++L +T++ S A++ K+ R+ +A STS + H P S+ S Sbjct: 200 LVSNSGMFKDSESSQDLDKLTEAEKSKVTAVRCKKCRTKLALSTSFIAHDPPSKE--SSE 257 Query: 305 GRLVKLPSVRH 337 G +K + H Sbjct: 258 GHFIKRAANSH 268
>ANK2_HUMAN (Q01484) Ankyrin-2 (Brain ankyrin) (Ankyrin-B) (Ankyrin,| nonerythroid) Length = 3924 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 6/51 (11%) Frame = +2 Query: 197 YSPRNALKLKEPRSLVAPSTSLVCHSPSSRSTT------SPAGRLVKLPSV 331 +SP ++ E S V+PST HSP S + T SP+G+ K P V Sbjct: 1833 HSPASSSSKTEKHSPVSPSTKTERHSPVSSTKTERHPPVSPSGKTDKRPPV 1883
>CRSP7_HUMAN (O95402) CRSP complex subunit 7 (Cofactor required for Sp1| transcriptional activation subunit 7) (Transcriptional coactivator CRSP70) (Activator-recruited cofactor 70 kDa component) (ARC70) Length = 600 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = +2 Query: 191 SLYSPRNALKLKEPRSLVAPSTSLVCHSPSSRSTTSPAGRLVKLPS 328 SLY+P+ ++ PR +T + P ++ +T P RL LPS Sbjct: 289 SLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPS 334
>FABF_VIBHA (P55338) 3-oxoacyl-[acyl-carrier-protein] synthase 2 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase II) (Beta-ketoacyl-ACP synthase II) (KAS II) Length = 414 Score = 29.6 bits (65), Expect = 1.8 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%) Frame = -1 Query: 363 DANATCYQMCLTDGNFTNLPAGDV-----VDRLLGEWQTREVLGATNDRGSFNFSAFLGE 199 DAN T Q+ + + T+ PAGDV V R LGE +++VL ++ + + G Sbjct: 289 DANITGTQVGYVNAHGTSTPAGDVAEIKGVKRALGEEGSKQVLVSSTKSMTGHLLGAAGS 348 Query: 198 YKLSVTYLN 172 + +T L+ Sbjct: 349 VEAIITVLS 357
>LPH_RABIT (P09849) Lactase-phlorizin hydrolase precursor| (Lactase-glycosylceramidase) [Includes: Lactase (EC 3.2.1.108); Phlorizin hydrolase (EC 3.2.1.62)] Length = 1926 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = -1 Query: 276 GEWQTREVLGATNDRGSFNFSAFLGEYKLSVTY 178 G WQ V+ A D +F FSAF KL VT+ Sbjct: 506 GGWQNESVVDAFVDYAAFCFSAFGNRVKLWVTF 538
>YPH2_THIVI (P45367) Hypothetical 41.3 kDa protein in phbC-phbA intergenic| region (ORF2) Length = 364 Score = 28.5 bits (62), Expect = 4.1 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 11/91 (12%) Frame = +2 Query: 71 MHGSINQSNHGWRRMVMCLVSSLRAREKVPSAEELR*VTDSLYSPR-------NALKLKE 229 +HG + + +R + +V +P+ ELR + D L R AL E Sbjct: 256 IHGRLVNAQMALKRRMAIMVDENLGAMNMPTRSELRTLQDRLQETRRDNKQLHRALHALE 315 Query: 230 PR----SLVAPSTSLVCHSPSSRSTTSPAGR 310 + S P+T+L +P++++T PA R Sbjct: 316 KQVAALSGKTPTTALKAPAPATKATEKPATR 346
>EXON_HHV6U (P24447) Alkaline exonuclease (EC 3.1.11.-)| Length = 488 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = +2 Query: 128 VSSLRAREKVPSAEELR*VTDSLYSPRNALKLKEPRSLVAPS-TSLVCHSPSSRST 292 V R R K+PS+ E D Y P+ L+ +++AP L+C + + +ST Sbjct: 275 VIEFRERGKIPSSREYLMTYDFQYRPQRKLRTCPTPAILAPHIKQLLCLNETQKST 330
>UVRB_XANOR (Q5GXX4) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 688 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Frame = -1 Query: 306 PAGDVVDRLLGEWQTREVLG------ATNDRGSFNFSAFLGEYKLSVTYLNSSAE 160 P G VD L+ E R LG R + N + +LGE+ + V YL+S + Sbjct: 442 PVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDID 496
>UVRB_XANCP (Q8P7X1) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 673 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Frame = -1 Query: 306 PAGDVVDRLLGEWQTREVLG------ATNDRGSFNFSAFLGEYKLSVTYLNSSAE 160 P G VD L+ E R LG R + N + +LGE+ + V YL+S + Sbjct: 427 PVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDID 481
>UVRB_XANC8 (Q4UW79) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 673 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Frame = -1 Query: 306 PAGDVVDRLLGEWQTREVLG------ATNDRGSFNFSAFLGEYKLSVTYLNSSAE 160 P G VD L+ E R LG R + N + +LGE+ + V YL+S + Sbjct: 427 PVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDID 481
>UVRB_XANAC (Q8PJB1) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 673 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Frame = -1 Query: 306 PAGDVVDRLLGEWQTREVLG------ATNDRGSFNFSAFLGEYKLSVTYLNSSAE 160 P G VD L+ E R LG R + N + +LGE+ + V YL+S + Sbjct: 427 PVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDID 481
>HAP1_HAEIN (P44596) Adhesion and penetration protein precursor (EC 3.4.21.-)| Length = 1409 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = -1 Query: 270 WQTREVLGATNDRGSFNFSAFLGEYKLSVTYLNSSAEGTFSLA 142 + T V G + +G+F F++ L YK L++ AEG ++L+ Sbjct: 893 FNTLTVNGKLSGQGTFQFTSSLFGYKSDKLKLSNDAEGDYTLS 935
>LV2A_HUMAN (P01704) Ig lambda chain V-II region TOG| Length = 111 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 8/63 (12%) Frame = -1 Query: 276 GEWQTREVLGATNDRGSFNFSAFLGEY-----KLSVTYLNSSAEGT---FSLARSDDTKH 121 G+ T G TND GS+++ ++ +Y K+ + +NS G FS ++S +T Sbjct: 15 GQSITISCTGTTNDIGSYSYVSWYQQYPGKAPKVLIFDVNSRPSGVSHRFSGSKSGNTAS 74 Query: 120 ITI 112 +TI Sbjct: 75 LTI 77
>LPH_HUMAN (P09848) Lactase-phlorizin hydrolase precursor| (Lactase-glycosylceramidase) [Includes: Lactase (EC 3.2.1.108); Phlorizin hydrolase (EC 3.2.1.62)] Length = 1927 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -1 Query: 276 GEWQTREVLGATNDRGSFNFSAFLGEYKLSVTY 178 G WQ V+ A D +F FS F KL VT+ Sbjct: 508 GGWQNESVVDAFLDYAAFCFSTFGDRVKLWVTF 540
>DPOA2_MOUSE (P33611) DNA polymerase alpha subunit B (DNA polymerase alpha 70| kDa subunit) Length = 600 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 11/85 (12%) Frame = +2 Query: 74 HGSINQSNHGWRRMVMCLVSSLRAREK---------VPSAEELR*VTDSLYSP--RNALK 220 H + S H R ++ + + A E+ PS L+ V+ + +P + ++ Sbjct: 79 HSASKDSGHAGTRDIVSIQELIEAEEEEETLLSSYTTPSKGPLKRVSSTPETPLTKRSVA 138 Query: 221 LKEPRSLVAPSTSLVCHSPSSRSTT 295 + PR L++PS+ +PS + T+ Sbjct: 139 ARSPRQLLSPSSFSPSATPSQKYTS 163
>ALGX_AZOVI (O52194) Alginate biosynthesis protein algX precursor| Length = 483 Score = 27.3 bits (59), Expect = 9.1 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Frame = -1 Query: 351 TCYQMCLTDGNFTNLPAGDVVDRLLGEWQTREV--LGATNDRGSFNFSAFLGEYK----L 190 T Y +D FT P G+ L G+ ++ +G ++ ++NF+ FL EY L Sbjct: 234 TTYAFEHSDQFFTE-PKGEGGGDLFGDSSLPQITLVGTSHSGTNYNFAGFLSEYMGAEIL 292 Query: 189 SVTYLNSSAEGT 154 +V + S EG+ Sbjct: 293 NVAFPGSGLEGS 304 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,046,611 Number of Sequences: 219361 Number of extensions: 631441 Number of successful extensions: 2060 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2013 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2060 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
