ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19o11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSTF1_WHEAT (P30110) Glutathione S-transferase 1 (EC 2.5.1.18) (... 57 4e-08
2GSTF2_WHEAT (P30111) Glutathione S-transferase 2 (EC 2.5.1.18) (... 57 4e-08
3GSTF3_MAIZE (P04907) Glutathione S-transferase III (EC 2.5.1.18)... 40 0.004
4GSTF4_MAIZE (P46420) Glutathione S-transferase IV (EC 2.5.1.18) ... 37 0.056
5GSTH1_ORYSA (O65857) Probable glutathione S-transferase GSTF1 (E... 35 0.13
6GSTF1_MAIZE (P12653) Glutathione S-transferase I (EC 2.5.1.18) (... 35 0.16
7GSTH2_ORYSA (O82451) Probable glutathione S-transferase GSTF2 (E... 34 0.28
8ERG6_YARLI (Q6C2D9) Sterol 24-C-methyltransferase (EC 2.1.1.41) ... 30 6.9
9SMT2_ORYSA (O82427) 24-methylenesterol C-methyltransferase 2 (EC... 29 9.0

>GSTF1_WHEAT (P30110) Glutathione S-transferase 1 (EC 2.5.1.18) (GST class-phi)|
          Length = 229

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 24/27 (88%), Positives = 25/27 (92%)
 Frame = -2

Query: 548 PKVKAWWESLMARPAVQRVCKHMPSLF 468
           PKVKAWWE LMARPAVQRVCKHMP+ F
Sbjct: 197 PKVKAWWEMLMARPAVQRVCKHMPTEF 223



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>GSTF2_WHEAT (P30111) Glutathione S-transferase 2 (EC 2.5.1.18) (GST class-phi)|
          Length = 291

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 24/27 (88%), Positives = 25/27 (92%)
 Frame = -2

Query: 548 PKVKAWWESLMARPAVQRVCKHMPSLF 468
           PKVKAWWE LMARPAVQRVCKHMP+ F
Sbjct: 197 PKVKAWWEMLMARPAVQRVCKHMPTEF 223



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>GSTF3_MAIZE (P04907) Glutathione S-transferase III (EC 2.5.1.18) (GST-III) (GST|
           class-phi)
          Length = 221

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -2

Query: 578 PARVRCLMTTPKVKAWWESLMARPAVQRVCKHMP 477
           P R  C+   P VKAWWE++ ARPA Q+    +P
Sbjct: 179 PPRPGCVAARPHVKAWWEAIAARPAFQKTVAAIP 212



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>GSTF4_MAIZE (P46420) Glutathione S-transferase IV (EC 2.5.1.18) (GST-IV)|
           (GST-27) (GST class-phi)
          Length = 222

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
 Frame = -2

Query: 569 VRCLMTT---------PKVKAWWESLMARPAVQRVCKHMP 477
           + CLM T         P V AWW+ L ARPA  +V + MP
Sbjct: 173 MHCLMATEYAALVHALPHVSAWWQGLAARPAANKVAQFMP 212



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>GSTH1_ORYSA (O65857) Probable glutathione S-transferase GSTF1 (EC 2.5.1.18)|
           (GST-I)
          Length = 219

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -2

Query: 548 PKVKAWWESLMARPAVQRVCKHM 480
           P VKAWWE LMARP+V+++   M
Sbjct: 192 PHVKAWWERLMARPSVKKLAAVM 214



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>GSTF1_MAIZE (P12653) Glutathione S-transferase I (EC 2.5.1.18) (GST-I) (GST-29)|
           (GST class-phi)
          Length = 213

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
 Frame = -2

Query: 584 DHPARVRCLMTTP---------KVKAWWESLMARPAVQRVCKHM 480
           +H +   CL  TP          VKAWW  LM RP+VQ+V   M
Sbjct: 166 NHVSVTLCLFATPYASVLDAYPHVKAWWSGLMERPSVQKVAALM 209



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>GSTH2_ORYSA (O82451) Probable glutathione S-transferase GSTF2 (EC 2.5.1.18)|
           (GST-II)
          Length = 214

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -2

Query: 548 PKVKAWWESLMARPAVQRVCKHM 480
           P VKAWW  LMARP+ Q+V   M
Sbjct: 188 PHVKAWWTDLMARPSSQKVASLM 210



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>ERG6_YARLI (Q6C2D9) Sterol 24-C-methyltransferase (EC 2.1.1.41)|
           (Delta(24)-sterol C-methyltransferase)
          Length = 381

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 417 SFHISLVYGGRSG**AAKQARHMLAHPLHRRPGHEALPPGLHLGG 551
           SFH S  Y G +   A  +  H LA+ +  +PG + L  G  +GG
Sbjct: 97  SFHFSRYYKGEAFRQATARHEHYLAYKMGIQPGMKVLDVGCGVGG 141



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>SMT2_ORYSA (O82427) 24-methylenesterol C-methyltransferase 2 (EC 2.1.1.143)|
           (24-sterol C-methyltransferase 2)
           (Sterol-C-methyltransferase 2)
          Length = 363

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 414 KSFHISLVYGGRSG**AAKQARHMLAHPLHRRPGHEALPPGLHLGG 551
           +SFH S    GRS   A +     +A  L  +PGH  L  G  +GG
Sbjct: 96  QSFHFSPSLPGRSHREATRVHEERVADLLQAKPGHRLLDVGCGVGG 141


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,555,859
Number of Sequences: 219361
Number of extensions: 1324680
Number of successful extensions: 3230
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3228
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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