ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19n23 |
|---|---|
| Clone Library Name | barley_pub |
>COPD_ORYSA (P49661) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 518 Score = 204 bits (519), Expect = 1e-52 Identities = 98/117 (83%), Positives = 108/117 (92%) Frame = -3 Query: 523 YEASEMFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSME 344 YEASEMFDL+NVVISIPLPALREAP V+QIDGEW+YDSRNSVLEWSIIL+DQSNRSGS+E Sbjct: 402 YEASEMFDLHNVVISIPLPALREAPGVRQIDGEWRYDSRNSVLEWSIILVDQSNRSGSLE 461 Query: 343 FIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 173 F VP ADPSTFFPIS+GF ASNTFSDLKVT I PL+EG+PPK+SQR RLV NYQ+V Sbjct: 462 FTVPAADPSTFFPISVGFSASNTFSDLKVTAIRPLREGSPPKFSQRNRLVTYNYQVV 518
>COPD_RAT (Q66H80) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 93.2 bits (230), Expect = 4e-19 Identities = 44/118 (37%), Positives = 75/118 (63%), Gaps = 1/118 (0%) Frame = -3 Query: 523 YEASE-MFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSM 347 YE E +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID N+SGS+ Sbjct: 395 YELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSL 454 Query: 346 EFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 173 EF + P P+ FFP+ + F + + +++VT + + +P ++S + Y+I+ Sbjct: 455 EFSI-PGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_MOUSE (Q5XJY5) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 93.2 bits (230), Expect = 4e-19 Identities = 44/118 (37%), Positives = 75/118 (63%), Gaps = 1/118 (0%) Frame = -3 Query: 523 YEASE-MFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSM 347 YE E +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID N+SGS+ Sbjct: 395 YELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSL 454 Query: 346 EFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 173 EF + P P+ FFP+ + F + + +++VT + + +P ++S + Y+I+ Sbjct: 455 EFSI-PGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_PONPY (Q5RA77) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 90.5 bits (223), Expect = 3e-18 Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 1/118 (0%) Frame = -3 Query: 523 YEASE-MFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSM 347 YE E +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID N+SGS+ Sbjct: 395 YELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSL 454 Query: 346 EFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 173 EF + P+ FFP+ + F + + +++VT + + +P ++S + Y+I+ Sbjct: 455 EFSI-AGQPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_HUMAN (P48444) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 90.5 bits (223), Expect = 3e-18 Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 1/118 (0%) Frame = -3 Query: 523 YEASE-MFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSM 347 YE E +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID N+SGS+ Sbjct: 395 YELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSL 454 Query: 346 EFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 173 EF + P+ FFP+ + F + + +++VT + + +P ++S + Y+I+ Sbjct: 455 EFSI-AGQPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_CHICK (Q5ZL57) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 510 Score = 90.5 bits (223), Expect = 3e-18 Identities = 41/113 (36%), Positives = 72/113 (63%) Frame = -3 Query: 511 EMFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVP 332 E +LN+VVI IPLP+ AP + +IDGE+++DSR ++LEW + +ID N+SGS+EF + Sbjct: 399 ESLELNDVVIMIPLPSGVGAPVIGEIDGEYRHDSRRNLLEWCLPVIDAKNKSGSLEFSI- 457 Query: 331 PADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 173 P+ FFP+ + F + + +++VT + + +P ++S + Y+I+ Sbjct: 458 AGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 510
>COPD_BOVIN (P53619) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 90.1 bits (222), Expect = 3e-18 Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 1/118 (0%) Frame = -3 Query: 523 YEASE-MFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSM 347 YE E +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID N+SGS+ Sbjct: 395 YELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSL 454 Query: 346 EFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 173 EF + P+ FFP+ + F + + +++VT + + +P ++S + Y+I+ Sbjct: 455 EFSI-AGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_CAEEL (Q09236) Probable coatomer subunit delta (Delta-coat protein)| (Delta-COP) Length = 515 Score = 84.3 bits (207), Expect = 2e-16 Identities = 45/113 (39%), Positives = 66/113 (58%) Frame = -3 Query: 511 EMFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVP 332 E LNNV I +PLP AP+V + DGE++Y +V+ WS+ +ID SN SG++EF VP Sbjct: 405 EDITLNNVRIIVPLPTAT-APSVGECDGEYEYHKTKNVIVWSLAVIDSSNSSGTLEFSVP 463 Query: 331 PADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 173 FFP+S+GF + N F + V + +G+P YS + N++IV Sbjct: 464 NGHCDHFFPVSVGFTSENLFVPITVQKV-VKNDGSPVTYSVETTFNSENFEIV 515
>YDHK_SALTY (Q8ZPN4) Hypothetical transport protein ydhK| Length = 679 Score = 32.3 bits (72), Expect = 0.81 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -3 Query: 484 ISIPLPALREAPTVKQIDGEWKYDSRNSV 398 + + LPALR P K G+W+Y RN++ Sbjct: 1 MKLSLPALRNTPWFKATSGQWRYALRNTI 29
>YDHK_SALTI (Q8Z6P7) Hypothetical transport protein ydhK| Length = 679 Score = 32.3 bits (72), Expect = 0.81 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -3 Query: 484 ISIPLPALREAPTVKQIDGEWKYDSRNSV 398 + + LPALR P K G+W+Y RN++ Sbjct: 1 MKLSLPALRNTPWFKATSGQWRYALRNTI 29
>AP1M_CAEEL (P35602) AP-1 complex subunit mu (Clathrin coat assembly protein| AP47) (Clathrin coat-associated protein AP47) (Golgi adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit) (Clathrin assembly protein assembly protein complex 1 medium chain) (Uncoor Length = 422 Score = 32.0 bits (71), Expect = 1.1 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = -3 Query: 496 NNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIV 335 NNV I IP+P+ ++P K G KY S W+I N G E+++ Sbjct: 307 NNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTI-----KNFPGGKEYLL 355
>AP1M2_MOUSE (Q9WVP1) AP-1 complex subunit mu-2 (Adaptor-related protein complex| 1 mu-2 subunit) (Mu-adaptin 2) (Adaptor protein complex AP-1 mu-2 subunit) (Golgi adaptor HA1/AP1 adaptin mu-2 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 423 Score = 31.6 bits (70), Expect = 1.4 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -3 Query: 496 NNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSI 383 N V IS+P+P+ ++P K G KY +V+ WSI Sbjct: 308 NGVEISVPVPSDADSPRFKTSVGSAKYVPEKNVVIWSI 345
>AP1M2_HUMAN (Q9Y6Q5) AP-1 complex subunit mu-2 (Adaptor-related protein complex| 1 mu-2 subunit) (Mu-adaptin 2) (Adaptor protein complex AP-1 mu-2 subunit) (Golgi adaptor HA1/AP1 adaptin mu-2 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 423 Score = 31.6 bits (70), Expect = 1.4 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -3 Query: 496 NNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSI 383 N V IS+P+P+ ++P K G KY +V+ WSI Sbjct: 308 NGVEISVPVPSDADSPRFKTSVGSAKYVPERNVVIWSI 345
>AP1M1_HUMAN (Q9BXS5) AP-1 complex subunit mu-1 (Adaptor-related protein complex| 1 mu-1 subunit) (Mu-adaptin 1) (Adaptor protein complex AP-1 mu-1 subunit) (Golgi adaptor HA1/AP1 adaptin mu-1 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 422 Score = 31.6 bits (70), Expect = 1.4 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = -3 Query: 496 NNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSI 383 NNV I IP+P ++P K G K+ NS + WSI Sbjct: 307 NNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSI 344
>AP1M1_MOUSE (P35585) AP-1 complex subunit mu-1 (Adaptor-related protein complex| 1 mu-1 subunit) (Mu-adaptin 1) (Adaptor protein complex AP-1 mu-1 subunit) (Golgi adaptor HA1/AP1 adaptin mu-1 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 422 Score = 31.2 bits (69), Expect = 1.8 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -3 Query: 496 NNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSI 383 NNV I IP+P ++P K G K+ NS + WS+ Sbjct: 307 NNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSV 344
>AP1M1_YEAST (Q00776) AP-1 complex subunit mu-1 (Mu(1)-adaptin) (Clathrin| assembly protein complex 1 medium chain) (Clathrin coat assembly protein AP54) (Clathrin coat-associated protein AP54) (Golgi adaptor AP-1 54 kDa protein) (HA1 54 kDa subunit) Length = 475 Score = 30.0 bits (66), Expect = 4.0 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -3 Query: 493 NVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSI 383 NV I IP+P + PT K G KY S + W I Sbjct: 348 NVEILIPVPDDADTPTFKYSHGSLKYVPEKSAILWKI 384
>SRP72_SCHPO (O59787) Signal recognition particle 72 kDa protein homolog (SRP72)| Length = 561 Score = 29.6 bits (65), Expect = 5.3 Identities = 14/51 (27%), Positives = 25/51 (49%) Frame = -1 Query: 519 RPQRCLT*TMLSYQFLCLHFGRLQPLNRLMESGSMTLETLYWNGPLSLLIS 367 + Q C +L + L H P++ + + S+ + L W GP+S L+S Sbjct: 401 KQQSCEAKLLLCTRSLLAHLDERAPVSTIQDDMSVIDDLLQWKGPISELVS 451 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,585,352 Number of Sequences: 219361 Number of extensions: 1704130 Number of successful extensions: 3791 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3708 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3790 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
