ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19n20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome... 58 4e-05
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 58 4e-05
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 58 4e-05
4gb|AF132119.1|AF132119 Pinus taeda laccase (Lac1) mRNA, complete... 56 2e-04
5gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
6dbj|AK066963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
7gb|AF465469.1| Lolium perenne laccase LAC2-1 mRNA, complete cds 50 0.010
8ref|XM_467807.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.15
9ref|NM_196671.1| Oryza sativa (japonica cultivar-group) putative... 46 0.15
10ref|NM_193864.1| Oryza sativa (japonica cultivar-group), predic... 46 0.15
11ref|NM_101674.3| Arabidopsis thaliana copper ion binding AT1G181... 44 0.59
12gb|AF465470.1| Lolium perenne laccase LAC5-4 mRNA, complete cds 44 0.59
13gb|AC034107.5|T10F20 Sequence of BAC T10F20 from Arabidopsis tha... 44 0.59
14gb|AC069551.4|AC069551 Genomic sequence for Arabidopsis thaliana... 44 0.59
15gb|U73105.1|LTU73105 Liriodendron tulipifera high-pI laccase (LA... 44 0.59
16ref|NM_190554.1| Oryza sativa (japonica cultivar-group), predic... 42 2.3
17ref|NM_192960.1| Oryza sativa (japonica cultivar-group), predic... 42 2.3
18emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 2.3
19ref|XM_389822.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 42 2.3
20emb|CR847808.6| Zebrafish DNA sequence from clone CH211-151I8 in... 42 2.3
21emb|CR352255.9| Zebrafish DNA sequence from clone CH211-118E10 i... 42 2.3
22emb|CR361560.10| Zebrafish DNA sequence from clone CH211-122G18 ... 42 2.3
23dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 42 2.3
24gb|AE011767.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 2.3
25dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
26dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
27dbj|AK103094.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
28dbj|AK068901.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
29dbj|AK059101.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
30gb|AF047697.1|AF047697 Oryza sativa putative high-pI laccase mRN... 42 2.3
31gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 42 2.3
32gb|AY364319.1| Felis catus chromosome A2 endogenous virus endoge... 40 9.2
33gb|AY364318.1| Felis catus chromosome A1 endogenous virus endoge... 40 9.2
34emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 9.2
35ref|XM_863193.1| PREDICTED: Canis familiaris hypothetical protei... 40 9.2
36emb|AL355350.8| Human DNA sequence from clone RP11-483B5 on chro... 40 9.2
37emb|AL161646.10| Human DNA sequence from clone RP11-127O4 on chr... 40 9.2
38gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cance... 40 9.2
39gb|AC151314.2| Xenopus tropicalis clone ISB-195A7, complete sequ... 40 9.2
40gb|AF132123.1|AF132123 Pinus taeda laccase (Lac5) mRNA, complete... 40 9.2
41dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
42gb|AC008313.3|AC008313 Drosophila melanogaster, chromosome 3R, r... 40 9.2
43dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
44gb|AE003676.4| Drosophila melanogaster chromosome 3R, section 14... 40 9.2
45gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.2
46emb|AL713907.3|CNS07YQ7 Oryza sativa chromosome 12, . BAC OJ1057... 40 9.2
47gb|L25632.1|FCVFELVAC Feline Leukemia Virus DNA sequence 40 9.2
48gb|M25425.1|CATFLVEP Cat endogenous proviral feline leukemia vir... 40 9.2 
>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24
              map C535, complete sequence
          Length = 174759

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                   
Query: 341    ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 393
              |||||||| |||||||| ||||||| ||| | ||||||||||||||| |||||
Sbjct: 167463 ccgagcccttgcgcgagcacgaacacgtcatagccatggaggtgcatcgggtt 167411



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 418    gctctggaacacgatctccaccg 440
              |||||||||||||||||||||||
Sbjct: 167386 gctctggaacacgatctccaccg 167364
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                    
Query: 341     ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 393
               |||||||| |||||||| ||||||| ||| | ||||||||||||||| |||||
Sbjct: 8850764 ccgagcccttgcgcgagcacgaacacgtcatagccatggaggtgcatcgggtt 8850816



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 344      agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 393
                ||||||||||| |||| ||| | ||| | |||||||||||||||||||||
Sbjct: 24578395 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 24578346



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 418     gctctggaacacgatctccaccg 440
               |||||||||||||||||||||||
Sbjct: 8850841 gctctggaacacgatctccaccg 8850863



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 373      gccatggaggtgcatggggtt 393
                |||||||||||||||||||||
Sbjct: 24569674 gccatggaggtgcatggggtt 24569654
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                    
Query: 341     ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 393
               |||||||| |||||||| ||||||| ||| | ||||||||||||||| |||||
Sbjct: 8922427 ccgagcccttgcgcgagcacgaacacgtcatagccatggaggtgcatcgggtt 8922479



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 344      agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 393
                ||||||||||| |||| ||| | ||| | |||||||||||||||||||||
Sbjct: 24890065 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 24890016



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 418     gctctggaacacgatctccaccg 440
               |||||||||||||||||||||||
Sbjct: 8922504 gctctggaacacgatctccaccg 8922526



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                     
Query: 341      ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 393
                ||||||||||| || |||| ||| |  || | |||||||||||||||||||||
Sbjct: 24881376 ccgagcccctgtgcaaggaggaagacatcatagccatggaggtgcatggggtt 24881324
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>gb|AF132119.1|AF132119 Pinus taeda laccase (Lac1) mRNA, complete cds
          Length = 2048

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 197  aaatgacagtgcaggaaccacacacctggatt 228
            ||||||||||||| ||||||||||||||||||
Sbjct: 1680 aaatgacagtgcatgaaccacacacctggatt 1649
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>gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0041L19, complete sequence
          Length = 155086

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 344   agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 393
             ||||||||||| |||| ||| | ||| | |||||||||||||||||||||
Sbjct: 55297 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 55248



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 341   ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 393
             ||||||||||| || |||| ||| |  || | |||||||||||||||||||||
Sbjct: 46608 ccgagcccctgtgcaaggaggaagacatcatagccatggaggtgcatggggtt 46556
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>dbj|AK066963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093P21, full
            insert sequence
          Length = 2095

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 344  agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 393
            ||||||||||| |||| ||| | ||| | |||||||||||||||||||||
Sbjct: 1552 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 1503
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>gb|AF465469.1| Lolium perenne laccase LAC2-1 mRNA, complete cds
          Length = 2056

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 347  ccctgcgcgaggacgaacatgtcctggccatggaggtgcat 387
            ||||| ||||||||||| | ||| |||||||||||||||||
Sbjct: 1483 ccctgggcgaggacgaagaagtcgtggccatggaggtgcat 1443
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>ref|XM_467807.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1740

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 194  tcaaaatgacagtgcaggaaccacacacctggatt 228
            |||||||| || |||| ||||||||||||||||||
Sbjct: 1637 tcaaaatggcaatgcatgaaccacacacctggatt 1603
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>ref|NM_196671.1| Oryza sativa (japonica cultivar-group) putative diphenol oxidase
            (OSJNBb0040I11.7), mRNA
          Length = 1404

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 194  tcaaaatgacagtgcaggaaccacacacctggatt 228
            |||||||| || |||| ||||||||||||||||||
Sbjct: 1301 tcaaaatggcaatgcatgaaccacacacctggatt 1267
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>ref|NM_193864.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1800

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 194  tcaaaatgacagtgcaggaaccacacacctggatt 228
            |||||||| || |||| ||||||||||||||||||
Sbjct: 1697 tcaaaatggcaatgcatgaaccacacacctggatt 1663
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>ref|NM_101674.3| Arabidopsis thaliana copper ion binding AT1G18140 mRNA, complete cds
          Length = 1931

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 281  ttcctcaccggcggatccaccaggttgtac 310
            |||||| ||||||||||||||| |||||||
Sbjct: 1599 ttcctctccggcggatccaccaagttgtac 1570
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>gb|AF465470.1| Lolium perenne laccase LAC5-4 mRNA, complete cds
          Length = 2156

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 412  caccgggctctggaacacgatctccaccgt 441
            ||||||| |||||| |||||||||||||||
Sbjct: 1410 caccgggttctggagcacgatctccaccgt 1381
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>gb|AC034107.5|T10F20 Sequence of BAC T10F20 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 81129

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 281   ttcctcaccggcggatccaccaggttgtac 310
             |||||| ||||||||||||||| |||||||
Sbjct: 45254 ttcctctccggcggatccaccaagttgtac 45283
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>gb|AC069551.4|AC069551 Genomic sequence for Arabidopsis thaliana BAC T10O22 from chromosome I,
             complete sequence
          Length = 92948

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 281   ttcctcaccggcggatccaccaggttgtac 310
             |||||| ||||||||||||||| |||||||
Sbjct: 30558 ttcctctccggcggatccaccaagttgtac 30587
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>gb|U73105.1|LTU73105 Liriodendron tulipifera high-pI laccase (LAC2-3) mRNA, complete cds
          Length = 2030

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 203  cagtgcaggaaccacacacctggatt 228
            ||||||| ||||||||||||||||||
Sbjct: 1714 cagtgcatgaaccacacacctggatt 1689
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>ref|NM_190554.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1734

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 197  aaatgacagtgcaggaaccacacacctgg 225
            ||||||||||||| |||||| ||||||||
Sbjct: 1628 aaatgacagtgcatgaaccatacacctgg 1600
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>ref|NM_192960.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1689

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 274  gacggtgttcctcaccggcggatccaccaggttgtac 310
            ||||||||||||| ||||||| || || |||||||||
Sbjct: 1506 gacggtgttcctctccggcgggtcgacgaggttgtac 1470
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 274     gacggtgttcctcaccggcgg 294
               |||||||||||||||||||||
Sbjct: 1591850 gacggtgttcctcaccggcgg 1591830
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>ref|XM_389822.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09646.1)
            partial mRNA
          Length = 1719

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 200  tgacagtgcaggaaccacacacctggatt 228
            ||||||||||||| ||| |||||||||||
Sbjct: 1550 tgacagtgcaggagccatacacctggatt 1522
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>emb|CR847808.6| Zebrafish DNA sequence from clone CH211-151I8 in linkage group 22,
             complete sequence
          Length = 147994

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 222   ctggatttttggtgacaaatc 242
             |||||||||||||||||||||
Sbjct: 74247 ctggatttttggtgacaaatc 74267
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>emb|CR352255.9| Zebrafish DNA sequence from clone CH211-118E10 in linkage group 24,
              complete sequence
          Length = 161221

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 551    aatgctgctcatgttacccgt 571
              |||||||||||||||||||||
Sbjct: 133290 aatgctgctcatgttacccgt 133310
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>emb|CR361560.10| Zebrafish DNA sequence from clone CH211-122G18 in linkage group 24,
              complete sequence
          Length = 184660

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 551    aatgctgctcatgttacccgt 571
              |||||||||||||||||||||
Sbjct: 181081 aatgctgctcatgttacccgt 181101
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 274     gacggtgttcctcaccggcgg 294
               |||||||||||||||||||||
Sbjct: 1974406 gacggtgttcctcaccggcgg 1974386
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>gb|AE011767.1| Xanthomonas axonopodis pv. citri str. 306,  section 145 of 469 of the
            complete genome
          Length = 11162

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 274  gacggtgttcctcaccggcgg 294
            |||||||||||||||||||||
Sbjct: 4020 gacggtgttcctcaccggcgg 4000
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 274      gacggtgttcctcaccggcggatccaccaggttgtac 310
                ||||||||||||| ||||||| || || |||||||||
Sbjct: 25435486 gacggtgttcctctccggcgggtcgacgaggttgtac 25435522



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 197      aaatgacagtgcaggaaccacacacctg 224
                ||||||||||||| |||||| |||||||
Sbjct: 36159512 aaatgacagtgcatgaaccatacacctg 36159539
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>dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0663E10
          Length = 162297

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 274    gacggtgttcctcaccggcggatccaccaggttgtac 310
              ||||||||||||| ||||||| || || |||||||||
Sbjct: 125486 gacggtgttcctctccggcgggtcgacgaggttgtac 125522
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>dbj|AK103094.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118K21, full
            insert sequence
          Length = 2065

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 373  gccatggaggtgcatggggtt 393
            |||||||||||||||||||||
Sbjct: 1549 gccatggaggtgcatggggtt 1529
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>dbj|AK068901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170B10, full
            insert sequence
          Length = 2066

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 197  aaatgacagtgcaggaaccacacacctgg 225
            ||||||||||||| |||||| ||||||||
Sbjct: 1744 aaatgacagtgcatgaaccatacacctgg 1716
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>dbj|AK059101.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D01, full
           insert sequence
          Length = 644

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 197 aaatgacagtgcaggaaccacacacctgg 225
           ||||||||||||| |||||| ||||||||
Sbjct: 320 aaatgacagtgcatgaaccatacacctgg 292
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>gb|AF047697.1|AF047697 Oryza sativa putative high-pI laccase mRNA, partial cds
          Length = 1874

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 197  aaatgacagtgcaggaaccacacacctgg 225
            ||||||||||||| |||||| ||||||||
Sbjct: 1550 aaatgacagtgcatgaaccatacacctgg 1522
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 274     gacggtgttcctcaccggcgg 294
               |||||||||||||||||||||
Sbjct: 1996453 gacggtgttcctcaccggcgg 1996433
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>gb|AY364319.1| Felis catus chromosome A2 endogenous virus endogenous feline leukemia
            virus enFeLV-GGAG, complete sequence
          Length = 9867

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 373  gccatggaggtgcatggggttagc 396
            ||||||||| ||||||||||||||
Sbjct: 7954 gccatggagatgcatggggttagc 7931
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>gb|AY364318.1| Felis catus chromosome A1 endogenous virus endogenous feline leukemia
            virus enFeLV-AGTT, complete sequence
          Length = 9895

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 373  gccatggaggtgcatggggttagc 396
            ||||||||| ||||||||||||||
Sbjct: 7967 gccatggagatgcatggggttagc 7944
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 298     caccaggttgtacgtcgcga 317
               ||||||||||||||||||||
Sbjct: 1635820 caccaggttgtacgtcgcga 1635801
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>ref|XM_863193.1| PREDICTED: Canis familiaris hypothetical protein LOC611444
           (LOC611444), mRNA
          Length = 690

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 339 gcccgagcccctgcgcgagg 358
           ||||||||||||||||||||
Sbjct: 405 gcccgagcccctgcgcgagg 386
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>emb|AL355350.8| Human DNA sequence from clone RP11-483B5 on chromosome 10 Contains two
             novel genes, the 5'end of the gene for VPS10 domain
             receptor protein SORCS 3 (SORCS3) and a CpG island,
             complete sequence
          Length = 153764

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 122   ggaagagtcgaatccaaagttgga 145
             ||||||||| ||||||||||||||
Sbjct: 91740 ggaagagtcaaatccaaagttgga 91717
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>emb|AL161646.10| Human DNA sequence from clone RP11-127O4 on chromosome 10 Contains two
              novel genes, the 5'end of the gene for VPS10 domain
              receptor protein SORCS 3 (SORCS3) and one CpG island,
              complete sequence
          Length = 183833

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 122    ggaagagtcgaatccaaagttgga 145
              ||||||||| ||||||||||||||
Sbjct: 177883 ggaagagtcaaatccaaagttgga 177860
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>gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 128301

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 24     agaaatacgaaaatctcgaaacaa 47
              ||||||| ||||||||||||||||
Sbjct: 112244 agaaataggaaaatctcgaaacaa 112267
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>gb|AC151314.2| Xenopus tropicalis clone ISB-195A7, complete sequence
          Length = 108847

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 623   tattaatcatgggtcccaaa 642
             ||||||||||||||||||||
Sbjct: 98178 tattaatcatgggtcccaaa 98197
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>gb|AF132123.1|AF132123 Pinus taeda laccase (Lac5) mRNA, complete cds
          Length = 2090

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 197  aaatgacagtgcaggaaccacacacctggatt 228
            ||||||||||||| |||||| || ||||||||
Sbjct: 1706 aaatgacagtgcatgaaccaaacccctggatt 1675
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 435      ccaccgtggcattgtaccgcagcc 458
                |||||||||||||||||| |||||
Sbjct: 16376913 ccaccgtggcattgtaccacagcc 16376890
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>gb|AC008313.3|AC008313 Drosophila melanogaster, chromosome 3R, region 84D-84E, BAC clone
             BACR11D12, complete sequence
          Length = 189596

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 547   tgctaatgctgctcatgtta 566
             ||||||||||||||||||||
Sbjct: 63308 tgctaatgctgctcatgtta 63289
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>dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406G08
          Length = 144233

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 197   aaatgacagtgcaggaaccacacacctg 224
             ||||||||||||| |||||| |||||||
Sbjct: 36525 aaatgacagtgcatgaaccatacacctg 36552
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>gb|AE003676.4| Drosophila melanogaster chromosome 3R, section 14 of 118 of the complete
              sequence
          Length = 267607

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 547    tgctaatgctgctcatgtta 566
              ||||||||||||||||||||
Sbjct: 139847 tgctaatgctgctcatgtta 139828
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 435      ccaccgtggcattgtaccgcagcc 458
                |||||||||||||||||| |||||
Sbjct: 16330146 ccaccgtggcattgtaccacagcc 16330123
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>emb|AL713907.3|CNS07YQ7 Oryza sativa chromosome 12, . BAC OJ1057_E03 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 127989

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 435   ccaccgtggcattgtaccgcagcc 458
             |||||||||||||||||| |||||
Sbjct: 75478 ccaccgtggcattgtaccacagcc 75501
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>gb|L25632.1|FCVFELVAC Feline Leukemia Virus DNA sequence
          Length = 2378

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 373  gccatggaggtgcatggggttagc 396
            ||||||||| ||||||||||||||
Sbjct: 1281 gccatggagatgcatggggttagc 1258
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>gb|M25425.1|CATFLVEP Cat endogenous proviral feline leukemia virus envelope protein gene,
            complete cds
          Length = 2615

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 373  gccatggaggtgcatggggttagc 396
            ||||||||| ||||||||||||||
Sbjct: 1341 gccatggagatgcatggggttagc 1318


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,177,579
Number of Sequences: 3902068
Number of extensions: 4177579
Number of successful extensions: 78391
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77980
Number of HSP's gapped (non-prelim): 409
length of query: 674
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 651
effective length of database: 17,143,297,704
effective search space: 11160286805304
effective search space used: 11160286805304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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