ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19n18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470236.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 474 Score = 194 bits (98), Expect = 2e-46 Identities = 167/190 (87%) Strand = Plus / Minus Query: 266 gtcttggacttgggagccttcttcttggcctgcctcttggggaccgagttcttcatgccc 325 ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct: 467 gtcttcgacttgggagccttcttcttggcctgcctcttgggaatggagttcttcatgccc 408 Query: 326 aggaagaagagaagggctccgaacagcgccaggttctgtgtgaacttcatgaagatctgc 385 |||||||| ||||| || || || || |||| |||||||||||||||||||||| |||| Sbjct: 407 aggaagaaaagaagcgccccaaagagagccaaattctgtgtgaacttcatgaagagctgc 348 Query: 386 acaaattcagccttctccatgtcgtaattatagaagtcgtacatgacaggggtgatgaaa 445 |||||||| | ||||||||||||||| || ||||||||||| | ||||| ||||| ||| Sbjct: 347 acaaattcggacttctccatgtcgtagttgtagaagtcgtagacaacaggtgtgataaaa 288 Query: 446 gcaaggtaaa 455 || ||||||| Sbjct: 287 gcgaggtaaa 278
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 266 gtcttggacttgggagccttcttcttggcctgcctcttggggaccgagttcttcatgccc 325 ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct: 2721564 gtcttcgacttgggagccttcttcttggcctgcctcttgggaatggagttcttcatgccc 2721623 Query: 326 aggaagaagagaag 339 |||||||| ||||| Sbjct: 2721624 aggaagaaaagaag 2721637 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 361 ctgtgtgaacttcatgaagatctgcacaaattcagccttctccatgtcgtaattatagaa 420 |||||||||||||||||||| |||||||||||| | ||||||||||||||| || ||||| Sbjct: 2721743 ctgtgtgaacttcatgaagagctgcacaaattcggacttctccatgtcgtagttgtagaa 2721802 Query: 421 gtcgtacatgacaggggtgatgaaagcaaggtaaa 455 |||||| | ||||| ||||| ||||| ||||||| Sbjct: 2721803 gtcgtagacaacaggtgtgataaaagcgaggtaaa 2721837 Score = 44.1 bits (22), Expect = 0.40 Identities = 31/34 (91%) Strand = Plus / Plus Query: 93 acaatctagtcccctaaaccgccacccacacctc 126 ||||||||||||||||| || |||| |||||||| Sbjct: 2721397 acaatctagtcccctaaccctccactcacacctc 2721430
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 266 gtcttggacttgggagccttcttcttggcctgcctcttggggaccgagttcttcatgccc 325 ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct: 2721674 gtcttcgacttgggagccttcttcttggcctgcctcttgggaatggagttcttcatgccc 2721733 Query: 326 aggaagaagagaag 339 |||||||| ||||| Sbjct: 2721734 aggaagaaaagaag 2721747 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 361 ctgtgtgaacttcatgaagatctgcacaaattcagccttctccatgtcgtaattatagaa 420 |||||||||||||||||||| |||||||||||| | ||||||||||||||| || ||||| Sbjct: 2721853 ctgtgtgaacttcatgaagagctgcacaaattcggacttctccatgtcgtagttgtagaa 2721912 Query: 421 gtcgtacatgacaggggtgatgaaagcaaggtaaa 455 |||||| | ||||| ||||| ||||| ||||||| Sbjct: 2721913 gtcgtagacaacaggtgtgataaaagcgaggtaaa 2721947 Score = 44.1 bits (22), Expect = 0.40 Identities = 31/34 (91%) Strand = Plus / Plus Query: 93 acaatctagtcccctaaaccgccacccacacctc 126 ||||||||||||||||| || |||| |||||||| Sbjct: 2721507 acaatctagtcccctaaccctccactcacacctc 2721540
>gb|AC105734.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0050N02, complete sequence Length = 133373 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 266 gtcttggacttgggagccttcttcttggcctgcctcttggggaccgagttcttcatgccc 325 ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct: 66483 gtcttcgacttgggagccttcttcttggcctgcctcttgggaatggagttcttcatgccc 66542 Query: 326 aggaagaagagaag 339 |||||||| ||||| Sbjct: 66543 aggaagaaaagaag 66556 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 361 ctgtgtgaacttcatgaagatctgcacaaattcagccttctccatgtcgtaattatagaa 420 |||||||||||||||||||| |||||||||||| | ||||||||||||||| || ||||| Sbjct: 66662 ctgtgtgaacttcatgaagagctgcacaaattcggacttctccatgtcgtagttgtagaa 66721 Query: 421 gtcgtacatgacaggggtgatgaaagcaaggtaaa 455 |||||| | ||||| ||||| ||||| ||||||| Sbjct: 66722 gtcgtagacaacaggtgtgataaaagcgaggtaaa 66756 Score = 44.1 bits (22), Expect = 0.40 Identities = 31/34 (91%) Strand = Plus / Plus Query: 93 acaatctagtcccctaaaccgccacccacacctc 126 ||||||||||||||||| || |||| |||||||| Sbjct: 66316 acaatctagtcccctaaccctccactcacacctc 66349
>gb|AY105812.1| Zea mays PCO140232 mRNA sequence Length = 1079 Score = 73.8 bits (37), Expect = 4e-10 Identities = 147/183 (80%), Gaps = 3/183 (1%) Strand = Plus / Minus Query: 274 cttgggagccttcttcttggc---ctgcctcttggggaccgagttcttcatgcccaggaa 330 |||||| |||||||||||| | ||||| ||| |||| ||||||||||||||||| || Sbjct: 607 cttgggggccttcttcttgccgccctgccgcttcgggatggagttcttcatgcccagaaa 548 Query: 331 gaagagaagggctccgaacagcgccaggttctgtgtgaacttcatgaagatctgcacaaa 390 |||||| || ||||||| |||||||| | ||| ||||||||| |||| |||| Sbjct: 547 gaagagcagagctccgatcagcgccaaatcctgggtgaacttcgcaaagaggcctgcaaa 488 Query: 391 ttcagccttctccatgtcgtaattatagaagtcgtacatgacaggggtgatgaaagcaag 450 ||| ||||||||||| ||||| || |||||||| | |||| ||| ||||| |||||||| Sbjct: 487 ttctgccttctccatatcgtagttgtagaagtcatggatgataggagtgatcaaagcaag 428 Query: 451 gta 453 ||| Sbjct: 427 gta 425
>ref|XM_549057.2| PREDICTED: Canis familiaris similar to HIN-6 protease (LOC491937), mRNA Length = 936 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 299 ctcttggggaccgagttcttcatgccc 325 ||||||||||||||||||||||||||| Sbjct: 182 ctcttggggaccgagttcttcatgccc 156
>gb|AC132278.3| Mus musculus BAC clone RP24-346C20 from chromosome 8, complete sequence Length = 154524 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Plus Query: 426 acatgacaggggtgatgaaagcaaggta 453 |||||||||||||| ||||||||||||| Sbjct: 11813 acatgacaggggtggtgaaagcaaggta 11840
>gb|AC123665.9| Mus musculus chromosome 14, clone RP23-226A4, complete sequence Length = 241576 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Plus Query: 242 tggcttagagagatgctctaagtt 265 |||||||||||||||||||||||| Sbjct: 47363 tggcttagagagatgctctaagtt 47386
>gb|AC122267.4| Mus musculus BAC clone RP23-214H6 from 8, complete sequence Length = 214619 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Plus Query: 426 acatgacaggggtgatgaaagcaaggta 453 |||||||||||||| ||||||||||||| Sbjct: 189562 acatgacaggggtggtgaaagcaaggta 189589
>gb|L08649.1|MUSMAC2B Mus musculus soluble lectin (Mac-2) gene, complete cds Length = 6952 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Plus Query: 242 tggcttagagagatgctctaagtt 265 |||||||||||||||||||||||| Sbjct: 5211 tggcttagagagatgctctaagtt 5234
>ref|NM_196732.1| Oryza sativa (japonica cultivar-group) putative RNA-binding protein (OSJNBa0094K20.7), mRNA Length = 648 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Minus Query: 290 ttggcctgcctcttggggaccgagttcttcatgcccaggaagaagag 336 |||| ||||||||| |||| |||||||||||| | ||||||||||| Sbjct: 614 ttgggctgcctcttagggatggagttcttcatggcaaggaagaagag 568
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Minus Query: 290 ttggcctgcctcttggggaccgagttcttcatgcccaggaagaagag 336 |||| ||||||||| |||| |||||||||||| | ||||||||||| Sbjct: 15582224 ttgggctgcctcttagggatggagttcttcatggcaaggaagaagag 15582178
>gb|AC025907.2|AC025907 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0094K20, complete sequence Length = 193119 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Minus Query: 290 ttggcctgcctcttggggaccgagttcttcatgcccaggaagaagag 336 |||| ||||||||| |||| |||||||||||| | ||||||||||| Sbjct: 69590 ttgggctgcctcttagggatggagttcttcatggcaaggaagaagag 69544
>dbj|AK073158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033003G06, full insert sequence Length = 881 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Minus Query: 290 ttggcctgcctcttggggaccgagttcttcatgcccaggaagaagag 336 |||| ||||||||| |||| |||||||||||| | ||||||||||| Sbjct: 523 ttgggctgcctcttagggatggagttcttcatggcaaggaagaagag 477
>dbj|AK059279.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-C10, full insert sequence Length = 968 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Minus Query: 290 ttggcctgcctcttggggaccgagttcttcatgcccaggaagaagag 336 |||| ||||||||| |||| |||||||||||| | ||||||||||| Sbjct: 520 ttgggctgcctcttagggatggagttcttcatggcaaggaagaagag 474
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Minus Query: 290 ttggcctgcctcttggggaccgagttcttcatgcccaggaagaagag 336 |||| ||||||||| |||| |||||||||||| | ||||||||||| Sbjct: 15590465 ttgggctgcctcttagggatggagttcttcatggcaaggaagaagag 15590419
>gb|AC111128.24| Mus musculus chromosome 18, clone RP23-338I7, complete sequence Length = 209784 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 162 cacatataagagaaccaggtac 183 |||||||||||||||||||||| Sbjct: 171336 cacatataagagaaccaggtac 171315
>gb|AC133945.2| Mus musculus chromosome 18 clone RP24-146N1, complete sequence Length = 139630 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 162 cacatataagagaaccaggtac 183 |||||||||||||||||||||| Sbjct: 1965 cacatataagagaaccaggtac 1944
>emb|AL591385.7| Human DNA sequence from clone RP11-391M20 on chromosome 9 Contains a novel gene similar to phosphoglucomutase 5 (PGM5), a pseudogene similar to part of FSHD region gene 1 (FRG1) and two CpG island, complete sequence Length = 174765 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 12 aaaataaacaaatgggataaca 33 |||||||||||||||||||||| Sbjct: 53023 aaaataaacaaatgggataaca 53044
>emb|AL353763.14| Human DNA sequence from clone RP11-87H9 on chromosome 9 Contains a pseudogene similar to part of FSHD region gene 1 (FRG1), a pseudogene similar to part of phosphoglucomutase 5 (PGM5) and a CpG island, complete sequence Length = 157266 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 12 aaaataaacaaatgggataaca 33 |||||||||||||||||||||| Sbjct: 89984 aaaataaacaaatgggataaca 89963
>emb|AL445925.19| Human DNA sequence from clone RP11-403A15 on chromosome 9 Contains a pseudogene similar to part of FSHD region gene 1 (FSG1) (FRG1), a pseudogene similar to part of phosphoglucomutase 5 (PGRM) (PGM5) and four CpG islands, complete sequence Length = 196461 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 12 aaaataaacaaatgggataaca 33 |||||||||||||||||||||| Sbjct: 55144 aaaataaacaaatgggataaca 55165
>emb|CR387925.5| Human DNA sequence from clone RP11-58A12 on chromosome 9, complete sequence Length = 172519 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 12 aaaataaacaaatgggataaca 33 |||||||||||||||||||||| Sbjct: 25914 aaaataaacaaatgggataaca 25935
>emb|AL512636.12| Human DNA sequence from clone RP11-213D12 on chromosome 6 Contains part of a novel gene, complete sequence Length = 160255 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 314 ttcttcatgcccaggaagaagagaa 338 ||||||||||||||||| ||||||| Sbjct: 109583 ttcttcatgcccaggaaaaagagaa 109607
>emb|AL022146.1|HS780M13 Human DNA sequence from clone RP4-780M13 on chromosome 1q24-25 Contains the 5' end of the SELP gene for selectin P (granule membrane protein 140kDa, antigen CD62) and the 5' end of a variant of a novel gene (FLJ45155), complete sequence Length = 78025 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 aaaataaacaaatgggataac 32 ||||||||||||||||||||| Sbjct: 34213 aaaataaacaaatgggataac 34193
>ref|XM_635619.1| Dictyostelium discoideum hypothetical protein (DDB0205619), partial mRNA Length = 4422 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 agagatgctctaagttgtct 269 |||||||||||||||||||| Sbjct: 3613 agagatgctctaagttgtct 3632
>gb|AE009183.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 209 of 256 of the complete sequence Length = 11873 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ggctccgaacagcgccaggt 359 |||||||||||||||||||| Sbjct: 3226 ggctccgaacagcgccaggt 3207
>gb|AC112956.12| Mus musculus chromosome 9, clone RP23-412P4, complete sequence Length = 197841 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 aaaataaacaaatgggataa 31 |||||||||||||||||||| Sbjct: 176036 aaaataaacaaatgggataa 176017
>gb|AC005247.2| Homo sapiens PAC clone RP4-740L10 from 7, complete sequence Length = 124096 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 aaaataaacaaatgggataacaat 35 |||||||||||| ||||||||||| Sbjct: 4944 aaaataaacaaaggggataacaat 4967
>ref|XM_754705.1| Ustilago maydis 521 hypothetical protein (UM03651.1) partial mRNA Length = 1779 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 gccttcttcttggcctgcctcttg 304 |||| ||||||||||||||||||| Sbjct: 1277 gcctccttcttggcctgcctcttg 1254
>gb|AC006355.3| Homo sapiens PAC clone RP5-1093G23 from 7, complete sequence Length = 137611 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 aaaataaacaaatgggataa 31 |||||||||||||||||||| Sbjct: 129048 aaaataaacaaatgggataa 129029
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 cccctaaaccgccacccaca 122 |||||||||||||||||||| Sbjct: 459016 cccctaaaccgccacccaca 458997
>emb|AL365188.9| Human DNA sequence from clone RP4-806J12 on chromosome 1, complete sequence Length = 64491 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 tgggagccttcttcttggcc 295 |||||||||||||||||||| Sbjct: 20442 tgggagccttcttcttggcc 20423
>gb|AC087358.9| Homo sapiens chromosome 8, clone RP11-442A17, complete sequence Length = 183097 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 caaaataaacaaatgggata 30 |||||||||||||||||||| Sbjct: 98078 caaaataaacaaatgggata 98059
>gb|AC109781.6| Homo sapiens 3 BAC RP11-317G9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 142477 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 gcaaaataaacaaatgggat 29 |||||||||||||||||||| Sbjct: 29517 gcaaaataaacaaatgggat 29498
>gb|AC160139.2| Mus musculus BAC clone RP23-93P8 from chromosome 9, complete sequence Length = 208009 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aaaataaacaaatgggataa 31 |||||||||||||||||||| Sbjct: 184930 aaaataaacaaatgggataa 184949
>gb|AF466379.1| Drosophila melanogaster sphingolipid delta 4 desaturase protein DES-1 mRNA, complete cds Length = 1744 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 cgaacagcgccaggttctgtgtga 368 |||||||||||||| ||||||||| Sbjct: 295 cgaacagcgccaggatctgtgtga 272
>ref|NM_057246.3| Drosophila melanogaster infertile crescent CG9078-RA (ifc), mRNA Length = 1812 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 cgaacagcgccaggttctgtgtga 368 |||||||||||||| ||||||||| Sbjct: 349 cgaacagcgccaggatctgtgtga 326
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ggctccgaacagcgccaggt 359 |||||||||||||||||||| Sbjct: 2316789 ggctccgaacagcgccaggt 2316770
>gb|AY061196.1| Drosophila melanogaster LD15458 full length cDNA Length = 1771 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 cgaacagcgccaggttctgtgtga 368 |||||||||||||| ||||||||| Sbjct: 294 cgaacagcgccaggatctgtgtga 271
>gb|BC100257.1| Rattus norvegicus similar to semaF cytoplasmic domain associated protein 2, mRNA (cDNA clone MGC:116274 IMAGE:7442312), complete cds Length = 1376 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 cttggacttgggagccttcttctt 291 ||||||||||| |||||||||||| Sbjct: 63 cttggacttggcagccttcttctt 40
>ref|NM_001037210.1| Rattus norvegicus similar to semaF cytoplasmic domain associated protein 2 (LOC365960), mRNA Length = 1376 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 cttggacttgggagccttcttctt 291 ||||||||||| |||||||||||| Sbjct: 63 cttggacttggcagccttcttctt 40
>gb|AC092239.1|AC092239 Drosophila melanogaster, chromosome 2L, region 25F-26X, BAC clone BACR48E14, complete sequence Length = 166441 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 cgaacagcgccaggttctgtgtga 368 |||||||||||||| ||||||||| Sbjct: 165047 cgaacagcgccaggatctgtgtga 165024
>gb|AC092216.1|AC092216 Drosophila melanogaster, chromosome 2L, region 25F-26A, BAC clone BACR10M11, complete sequence Length = 174832 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 cgaacagcgccaggttctgtgtga 368 |||||||||||||| ||||||||| Sbjct: 163745 cgaacagcgccaggatctgtgtga 163768
>gb|AC120549.22| Mus musculus chromosome 1, clone RP23-172L16, complete sequence Length = 210516 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 ttggacttgggagccttctt 288 |||||||||||||||||||| Sbjct: 85396 ttggacttgggagccttctt 85377
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 gggagccttcttcttggcct 296 |||||||||||||||||||| Sbjct: 24463026 gggagccttcttcttggcct 24463045
>gb|AC010988.9| Homo sapiens BAC clone RP11-570F4 from 2, complete sequence Length = 130069 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aaaataaacaaatgggataa 31 |||||||||||||||||||| Sbjct: 85109 aaaataaacaaatgggataa 85128
>gb|AC146416.4| Pan troglodytes BAC clone RP43-32B6 from chromosome 7, complete sequence Length = 180657 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 aaaataaacaaatgggataa 31 |||||||||||||||||||| Sbjct: 20879 aaaataaacaaatgggataa 20860
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 ggctccgaacagcgccaggt 359 |||||||||||||||||||| Sbjct: 567799 ggctccgaacagcgccaggt 567818
>gb|AE003612.2| Drosophila melanogaster chromosome 2L, section 21 of 83 of the complete sequence Length = 260673 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 cgaacagcgccaggttctgtgtga 368 |||||||||||||| ||||||||| Sbjct: 30334 cgaacagcgccaggatctgtgtga 30311
>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence Length = 2906179 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 gcaccccttcaaaaacggat 155 |||||||||||||||||||| Sbjct: 2888290 gcaccccttcaaaaacggat 2888271
>gb|U66269.1|NTU66269 Nicotiana tabacum ORF mRNA, complete cds Length = 752 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 gacttgggagccttcttctt 291 |||||||||||||||||||| Sbjct: 543 gacttgggagccttcttctt 524
>gb|U66266.1|NTU66266 Nicotiana tabacum ORF mRNA, complete cds Length = 737 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 gacttgggagccttcttctt 291 |||||||||||||||||||| Sbjct: 545 gacttgggagccttcttctt 526
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 gggagccttcttcttggcct 296 |||||||||||||||||||| Sbjct: 24391232 gggagccttcttcttggcct 24391251
>emb|AL844880.3|CNS08CB3 Oryza sativa chromosome 12, . BAC OSJNBb0049H14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 120071 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 gggagccttcttcttggcct 296 |||||||||||||||||||| Sbjct: 34057 gggagccttcttcttggcct 34076
>gb|AC004758.1|AC004758 Drosophila melanogaster DNA sequence (P1s DS06106 (D123), DS05973 (D122), and DS08584 (D118)), complete sequence Length = 174311 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 cgaacagcgccaggttctgtgtga 368 |||||||||||||| ||||||||| Sbjct: 103457 cgaacagcgccaggatctgtgtga 103480
>dbj|BA000009.3| Beta vulgaris subsp. vulgaris mitochondrial genomic DNA, complete sequence Length = 368801 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 atcttggcttagagagatgc 257 |||||||||||||||||||| Sbjct: 64014 atcttggcttagagagatgc 64033
>dbj|BA000024.1| Beta vulgaris subsp. vulgaris mitochondrial genomic DNA, complete sequence Length = 501020 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 atcttggcttagagagatgc 257 |||||||||||||||||||| Sbjct: 186682 atcttggcttagagagatgc 186701
>emb|AL590389.8| Mouse DNA sequence from clone RP23-393F23 on chromosome 2, complete sequence Length = 207901 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 cacataataatgatacacaa 96 |||||||||||||||||||| Sbjct: 111592 cacataataatgatacacaa 111573
>emb|X94180.1|DMDES1 D.melanogaster des1 gene Length = 2714 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 cgaacagcgccaggttctgtgtga 368 |||||||||||||| ||||||||| Sbjct: 540 cgaacagcgccaggatctgtgtga 517 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,528,731 Number of Sequences: 3902068 Number of extensions: 4528731 Number of successful extensions: 92479 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92168 Number of HSP's gapped (non-prelim): 310 length of query: 459 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 437 effective length of database: 17,147,199,772 effective search space: 7493326300364 effective search space used: 7493326300364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
