ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19n16 |
|---|---|
| Clone Library Name | barley_pub |
>PUM2_MOUSE (Q80U58) Pumilio homolog 2| Length = 1066 Score = 65.9 bits (159), Expect = 9e-11 Identities = 26/51 (50%), Positives = 41/51 (80%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRVEQ 447 MKDQYANYVVQK+++ QR++++ +++ H+ LRKYTYGKHI +++E+ Sbjct: 996 MKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 1046 Score = 40.0 bits (92), Expect = 0.005 Identities = 15/48 (31%), Positives = 30/48 (62%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR 456 ++DQY NYV+Q +LE E + +VS ++G + AL ++ + ++ + Sbjct: 917 VQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK 964 Score = 36.6 bits (83), Expect = 0.057 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR 456 M D + NYV+QK E + +Q+ L +R++GH+ L YG + + Sbjct: 771 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQK 818 Score = 35.8 bits (81), Expect = 0.097 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRV 453 +KDQ N+VVQK +E + + ++ KG + L + YG + R+ Sbjct: 845 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRI 893 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -1 Query: 587 YANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRV 453 Y V+Q+ILE C EQ ++ + H + L + YG ++ V Sbjct: 885 YGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHV 929
>PUM2_HUMAN (Q8TB72) Pumilio homolog 2 (Pumilio-2)| Length = 1066 Score = 65.9 bits (159), Expect = 9e-11 Identities = 26/51 (50%), Positives = 41/51 (80%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRVEQ 447 MKDQYANYVVQK+++ QR++++ +++ H+ LRKYTYGKHI +++E+ Sbjct: 996 MKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 1046 Score = 40.0 bits (92), Expect = 0.005 Identities = 15/48 (31%), Positives = 30/48 (62%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR 456 ++DQY NYV+Q +LE E + +VS ++G + AL ++ + ++ + Sbjct: 917 VQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK 964 Score = 36.6 bits (83), Expect = 0.057 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR 456 M D + NYV+QK E + +Q+ L +R++GH+ L YG + + Sbjct: 771 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQK 818 Score = 35.8 bits (81), Expect = 0.097 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRV 453 +KDQ N+VVQK +E + + ++ KG + L + YG + R+ Sbjct: 845 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRI 893 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -1 Query: 587 YANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRV 453 Y V+Q+ILE C EQ ++ + H + L + YG ++ V Sbjct: 885 YGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHV 929
>PUM1_HUMAN (Q14671) Pumilio homolog 1 (Pumilio-1) (HsPUM)| Length = 1186 Score = 65.5 bits (158), Expect = 1e-10 Identities = 26/51 (50%), Positives = 41/51 (80%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRVEQ 447 MKDQYANYVVQK+++ QR++++ +++ H+ LRKYTYGKHI +++E+ Sbjct: 1116 MKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1166 Score = 38.1 bits (87), Expect = 0.020 Identities = 13/48 (27%), Positives = 30/48 (62%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR 456 ++DQY NYV+Q +LE E + +V+ ++G++ L ++ + ++ + Sbjct: 1037 VQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEK 1084 Score = 37.7 bits (86), Expect = 0.026 Identities = 17/48 (35%), Positives = 27/48 (56%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR 456 M D + NYV+QK E + EQ+ L R++GH+ +L YG + + Sbjct: 893 MVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQK 940 Score = 37.4 bits (85), Expect = 0.033 Identities = 16/49 (32%), Positives = 27/49 (55%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRV 453 +KDQ N+VVQK +E + + ++ KG + AL + YG + R+ Sbjct: 965 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRI 1013
>PUM1_MOUSE (Q80U78) Pumilio homolog 1| Length = 1189 Score = 65.5 bits (158), Expect = 1e-10 Identities = 26/51 (50%), Positives = 41/51 (80%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRVEQ 447 MKDQYANYVVQK+++ QR++++ +++ H+ LRKYTYGKHI +++E+ Sbjct: 1119 MKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1169 Score = 38.9 bits (89), Expect = 0.011 Identities = 17/48 (35%), Positives = 27/48 (56%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR 456 M D + NYV+QK E + EQ+ L R++GH+ +L YG + + Sbjct: 894 MVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQK 941 Score = 38.1 bits (87), Expect = 0.020 Identities = 13/48 (27%), Positives = 30/48 (62%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR 456 ++DQY NYV+Q +LE E + +V+ ++G++ L ++ + ++ + Sbjct: 1040 VQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEK 1087 Score = 37.4 bits (85), Expect = 0.033 Identities = 16/49 (32%), Positives = 27/49 (55%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRV 453 +KDQ N+VVQK +E + + ++ KG + AL + YG + R+ Sbjct: 968 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRI 1016
>PUM_DROME (P25822) Maternal protein pumilio| Length = 1533 Score = 64.3 bits (155), Expect = 3e-10 Identities = 27/51 (52%), Positives = 41/51 (80%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRVEQ 447 MKDQYANYVVQK+++ Q + L+++++ H+ ALRKYTYGKHI +++E+ Sbjct: 1376 MKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYGKHINAKLEK 1426 Score = 39.7 bits (91), Expect = 0.007 Identities = 14/48 (29%), Positives = 30/48 (62%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR 456 ++DQY NYV+Q +LE E + +L++ V+G + L ++ + ++ + Sbjct: 1300 IQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEK 1347 Score = 37.7 bits (86), Expect = 0.026 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR 456 M D + NYV+QK E EQ+ L +VKGH+ L YG + + Sbjct: 1156 MTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQK 1203 Score = 35.8 bits (81), Expect = 0.097 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRV 453 +KDQ N+VVQK +E + + +++ KG + +L + YG + R+ Sbjct: 1228 VKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRI 1276 Score = 30.8 bits (68), Expect = 3.1 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -1 Query: 587 YANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR 456 Y V+QK LE+ + EQ++ +V + GH+ K G H+ + Sbjct: 1196 YGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNHVVQK 1239 Score = 30.4 bits (67), Expect = 4.1 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -1 Query: 587 YANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRV 453 Y V+Q+ILE C EQ ++ + H + L + YG ++ V Sbjct: 1268 YGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQDQYGNYVIQHV 1312
>YD15_SCHPO (Q10238) Putative regulatory protein C4G9.05| Length = 581 Score = 44.3 bits (103), Expect = 3e-04 Identities = 19/49 (38%), Positives = 31/49 (63%) Frame = -1 Query: 593 DQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRVEQ 447 +QY NY+VQ +L+ Q L+ +K H+ +LR + YG+ IA+ VE+ Sbjct: 530 NQYGNYIVQYLLQVATPSQINLMAEHLKKHMVSLRGHKYGQRIAALVEK 578 Score = 30.4 bits (67), Expect = 4.1 Identities = 12/48 (25%), Positives = 26/48 (54%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR 456 MK+++ N+++QK E + Q + +K H++ L +G H+ + Sbjct: 300 MKNKFGNFLIQKCFEYSTEAQLQSFSYFLKKHVKELSIDAFGSHVLQK 347
>MCP2_SCHPO (O74438) Meiotic coiled-coil protein 2| Length = 703 Score = 43.5 bits (101), Expect = 5e-04 Identities = 17/49 (34%), Positives = 33/49 (67%) Frame = -1 Query: 593 DQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRVEQ 447 DQY NY++Q+I++ ++ L+++ +K H+ +LR YG+ +A VE+ Sbjct: 636 DQYGNYLIQQIIQLGQPAEKNLVITHIKKHMVSLRGSKYGQKVAYLVEK 684
>YDHE_SCHPO (Q92359) Hypothetical protein C6G9.14 in chromosome I| Length = 681 Score = 40.0 bits (92), Expect = 0.005 Identities = 17/51 (33%), Positives = 33/51 (64%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRVEQ 447 ++D +ANYV+Q L+ + +QR LV R+K + +++ G+ I S++E+ Sbjct: 607 LRDSFANYVIQTALDNASVKQRAELVERIKPLIPSIKNTPCGRRILSKLER 657
>PUF3_YEAST (Q07807) Protein PUF3| Length = 879 Score = 39.3 bits (90), Expect = 0.009 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 2/49 (4%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTY--GKHIAS 459 +KDQ+ANYV+QK++ E ++L+V ++ +L L K +H+AS Sbjct: 818 IKDQFANYVIQKLVNVSEGEGKKLIVIAIRAYLDKLNKSNSLGNRHLAS 866 Score = 39.3 bits (90), Expect = 0.009 Identities = 17/49 (34%), Positives = 30/49 (61%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRV 453 +KDQ N+V+QK +ET E+ ++S + GH+ L ++YG + R+ Sbjct: 655 IKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRL 703 Score = 31.2 bits (69), Expect = 2.4 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = -1 Query: 593 DQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR 456 D + NYV+QK E + Q+ LV + KG+++ L Y + + Sbjct: 585 DVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQK 630
>B3A3_RABIT (O18917) Anion exchange protein 3 (Neuronal band 3-like protein)| (Solute carrier family 4 member 3) (Anion exchanger 3 brain isoform) Length = 1233 Score = 37.4 bits (85), Expect = 0.033 Identities = 28/76 (36%), Positives = 37/76 (48%) Frame = -3 Query: 528 SGQPCKGSLASTEEVHLWQTYREPGRAAFAVKEMPSATPRGREVPQRSPDSSSRKKSTPA 349 S Q K S+ S E+ + PG+AAF K +PS PR + PQRS SSS + P Sbjct: 161 SPQKAKFSIGSDED----DSPGLPGKAAFT-KPLPSVGPRSDKSPQRSVSSSSPRARAPR 215 Query: 348 QFIGNEEIITWNRGAS 301 + E W+ AS Sbjct: 216 --VAGERSRPWSPSAS 229
>YAD3_SCHPO (Q09829) Hypothetical protein C4G8.03c in chromosome I| Length = 780 Score = 35.0 bits (79), Expect = 0.17 Identities = 13/49 (26%), Positives = 30/49 (61%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRV 453 + D YANYV+Q+ L ++ Q+ L++ + + ++ +G+HI +++ Sbjct: 726 LDDCYANYVMQRFLNVADESQKFLILRSISHVIPKIQNTRHGRHILAKL 774
>YS83_CAEEL (Q09622) Hypothetical protein ZK945.3 in chromosome II| Length = 766 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = -1 Query: 596 KDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRVE 450 K+ Y+ + V+K+L+ EQR+++++ +GH L + KH A +E Sbjct: 323 KNVYSKFFVKKMLKNGTKEQRDIIINAFRGHAPTLLRI---KHAAEVLE 368
>PUF4_YEAST (P25339) Protein PUF4| Length = 888 Score = 30.4 bits (67), Expect = 4.1 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -1 Query: 599 MKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYG 474 M D + NY++QK+LE EQR +L H + +G Sbjct: 608 MTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHG 649
>LAD1_MOUSE (P57016) Ladinin 1 (Lad-1) (Linear IgA disease autoantigen)| Length = 528 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 9/40 (22%) Frame = -3 Query: 441 AVKEMPSAT---------PRGREVPQRSPDSSSRKKSTPA 349 AV E P T PRGR +P +SP SS+ ++STPA Sbjct: 301 AVSEQPQTTGGSQATTREPRGRALPDKSPPSSA-EQSTPA 339
>KGUA_XANCP (Q8P5T7) Guanylate kinase (EC 2.7.4.8) (GMP kinase)| Length = 203 Score = 29.6 bits (65), Expect = 6.9 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = +2 Query: 416 VALGISFTAKAARPGSRYVCH 478 +AL ISFT++A RPG R+ H Sbjct: 30 IALSISFTSRAPRPGERHAEH 50
>KGUA_XANAC (Q8PH65) Guanylate kinase (EC 2.7.4.8) (GMP kinase)| Length = 203 Score = 29.6 bits (65), Expect = 6.9 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = +2 Query: 416 VALGISFTAKAARPGSRYVCH 478 +AL ISFT++A RPG R+ H Sbjct: 30 IALSISFTSRAPRPGERHAEH 50
>ADD_HAEDU (Q7VNV1) Adenosine deaminase (EC 3.5.4.4) (Adenosine| aminohydrolase) Length = 344 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Frame = +1 Query: 40 ASKQAITLPSSQSFSKNIYVSHTQ-AKPLLLYIFCTRLPTTVVQCGQA 180 A KQA+ LP+S + + YVS Q L Y+ C LP +++Q +A Sbjct: 30 AKKQAVNLPASTAEALTAYVSVPQDCSDLNEYLRCFDLPLSLLQTPEA 77
>O52B2_HUMAN (Q96RD2) Olfactory receptor 52B2| Length = 317 Score = 29.6 bits (65), Expect = 6.9 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +3 Query: 240 TAYSHICTIFLAGVPSFVSTLKHH 311 T SH+C I + VPSF + L HH Sbjct: 242 TCGSHLCVILMFYVPSFFTLLTHH 265
>KTNB1_ARATH (Q8H0T9) Katanin p80 WD40-containing subunit B1 homolog 1| Length = 837 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -1 Query: 299 SANKTWNSSKEDCTYVTVGSVGGARHKVSSVRISVSMLG 183 S ++ + SKE T+ + GS+ G H+VSS +S + G Sbjct: 399 SVSQNSDVSKESRTFSSTGSLPGTPHRVSSTNVSKATSG 437
>UGGG2_HUMAN (Q9NYU1) UDP-glucose:glycoprotein glucosyltransferase 2 precursor (EC| 2.4.1.-) (UDP-glucose ceramide glucosyltransferase-like 1) (UDP--Glc:glycoprotein glucosyltransferase 2) (HUGT2) Length = 1516 Score = 29.3 bits (64), Expect = 9.1 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +2 Query: 314 FQVMISSLPMNWAGVDFFLDDESGER 391 +QV I SLP +W + + DDES +R Sbjct: 1436 YQVAIKSLPQDWLWCETWCDDESKQR 1461 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,800,121 Number of Sequences: 219361 Number of extensions: 1642143 Number of successful extensions: 5163 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5000 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5163 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
