ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19n15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_482753.1| Oryza sativa (japonica cultivar-group), mRNA 420 e-114
2ref|XM_507254.1| PREDICTED Oryza sativa (japonica cultivar-group... 420 e-114
3dbj|AK099156.1| Oryza sativa (japonica cultivar-group) cDNA clon... 420 e-114
4dbj|AK061573.1| Oryza sativa (japonica cultivar-group) cDNA clon... 420 e-114
5gb|AY105251.1| Zea mays PCO080180 mRNA sequence 313 4e-82
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 309 6e-81
7dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic D... 309 6e-81
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
9dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
10dbj|AK070593.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.14
11ref|XM_472010.1| Oryza sativa (japonica cultivar-group), predic... 44 0.54
12emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4,... 44 0.54
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.54
14dbj|AK102622.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.54
15gb|AC139863.5| Mus musculus chromosome 14, clone RP23-19M21, com... 42 2.1
16gb|AC134791.8| Mus musculus chromosome 14, clone RP23-377F8, com... 42 2.1
17gb|AC082648.6| Homo sapiens BAC clone CTD-2057N4 from 7, complet... 42 2.1
18gb|AC079763.7| Homo sapiens BAC clone RP11-153N17 from 7, comple... 42 2.1
19gb|AC154380.2| Mus musculus BAC clone RP23-52F1 from chromosome ... 42 2.1
20gb|AC146446.3| Pan troglodytes BAC clone RP43-5P22 from chromoso... 42 2.1
21emb|BX571802.15| Zebrafish DNA sequence from clone CH211-197A16 ... 40 8.4
22gb|AC122379.4| Mus musculus BAC clone RP23-476A7 from chromosome... 40 8.4
23ref|XM_789318.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 8.4
24gb|AC131150.8| Homo sapiens 3 BAC RP11-637J15 (Roswell Park Canc... 40 8.4
25gb|AC090610.6| Homo sapiens chromosome 17, clone RP11-493I24, co... 40 8.4
26gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold 40 8.4
27gb|AC090676.11| Homo sapiens 12 BAC RP11-654D6 (Roswell Park Can... 40 8.4
28gb|AC079117.6| Homo sapiens BAC clone RP11-122D13 from 2, comple... 40 8.4
29gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 8.4 
>ref|XM_482753.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 920

 Score =  420 bits (212), Expect = e-114
 Identities = 401/464 (86%)
 Strand = Plus / Minus

                                                                       
Query: 155 ttacttgttggatggaataaggtaactgaggaagggttctgccttcggggcaatggtttt 214
           ||||||| |||| |||||||||||  ||||||| ||||||||||| || ||||||| |||
Sbjct: 712 ttacttggtggaaggaataaggtacttgaggaacggttctgccttaggagcaatggattt 653

                                                                       
Query: 215 cacatcatcaaaagaggccatttcgaaatcctcgtactcgaagccaggggcgcaagtgca 274
           |||||||||||||  |||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct: 652 cacatcatcaaaattggccatttcgaaatcctcatactggaagccaggggcacaagtgca 593

                                                                       
Query: 275 gccgacgagggagtagtgcttctcggggtctcgcttccgagagttgacaagatggctgcc 334
           ||| || |||||||| ||   ||| || || | ||| ||||| |||||||||  ||||||
Sbjct: 592 gccaactagggagtaatgaagctcaggatccctctttcgagacttgacaagaacgctgcc 533

                                                                       
Query: 335 atccgatgcaaacgactcgacatccaacgtagggaaagaaccaaaccacacatttggtgg 394
           ||| ||||| || || || |||||||  |||||||||||||| |||||||||||||||||
Sbjct: 532 atcagatgcgaatgattcaacatccagggtagggaaagaaccgaaccacacatttggtgg 473

                                                                       
Query: 395 cacggtgtactgggggcgctggccagcgtccaggtgtggaccaattacggtgaggtcaat 454
           |||||| |||||||| ||||||||||| |||||||||||||| || || |||||||||||
Sbjct: 472 cacggtatactggggacgctggccagcctccaggtgtggaccgatgacagtgaggtcaat 413

                                                                       
Query: 455 gtggccatcgtcgtgtagctcaaagaccgtgagaggctctcccttgtagaaatgccaggt 514
           ||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 412 gtgtccatcatcgtgtagctcaaagaccgtgagaggctctcccttgtagaagtgccatgt 353

                                                                       
Query: 515 ttcagcgcaaggaatacgatgcagacgtgaaacacttcctgcaggaagcaagaaatagat 574
           |||||| || ||||| ||||| ||  | |||||||| ||||  ||||||| ||| |||||
Sbjct: 352 ttcagcacagggaatgcgatggaggtgagaaacactccctgatggaagcaggaagtagat 293

                                                       
Query: 575 agcggtgctcacagcacgcccaaccttgtactgcggcgggagct 618
           ||| ||||| | ||||||  | ||||||||||||||||||||||
Sbjct: 292 agcagtgctgatagcacggtcgaccttgtactgcggcgggagct 249
to top
>ref|XM_507254.1| PREDICTED Oryza sativa (japonica cultivar-group), B1144B06.21 mRNA
          Length = 992

 Score =  420 bits (212), Expect = e-114
 Identities = 401/464 (86%)
 Strand = Plus / Minus

                                                                       
Query: 155 ttacttgttggatggaataaggtaactgaggaagggttctgccttcggggcaatggtttt 214
           ||||||| |||| |||||||||||  ||||||| ||||||||||| || ||||||| |||
Sbjct: 772 ttacttggtggaaggaataaggtacttgaggaacggttctgccttaggagcaatggattt 713

                                                                       
Query: 215 cacatcatcaaaagaggccatttcgaaatcctcgtactcgaagccaggggcgcaagtgca 274
           |||||||||||||  |||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct: 712 cacatcatcaaaattggccatttcgaaatcctcatactggaagccaggggcacaagtgca 653

                                                                       
Query: 275 gccgacgagggagtagtgcttctcggggtctcgcttccgagagttgacaagatggctgcc 334
           ||| || |||||||| ||   ||| || || | ||| ||||| |||||||||  ||||||
Sbjct: 652 gccaactagggagtaatgaagctcaggatccctctttcgagacttgacaagaacgctgcc 593

                                                                       
Query: 335 atccgatgcaaacgactcgacatccaacgtagggaaagaaccaaaccacacatttggtgg 394
           ||| ||||| || || || |||||||  |||||||||||||| |||||||||||||||||
Sbjct: 592 atcagatgcgaatgattcaacatccagggtagggaaagaaccgaaccacacatttggtgg 533

                                                                       
Query: 395 cacggtgtactgggggcgctggccagcgtccaggtgtggaccaattacggtgaggtcaat 454
           |||||| |||||||| ||||||||||| |||||||||||||| || || |||||||||||
Sbjct: 532 cacggtatactggggacgctggccagcctccaggtgtggaccgatgacagtgaggtcaat 473

                                                                       
Query: 455 gtggccatcgtcgtgtagctcaaagaccgtgagaggctctcccttgtagaaatgccaggt 514
           ||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 472 gtgtccatcatcgtgtagctcaaagaccgtgagaggctctcccttgtagaagtgccatgt 413

                                                                       
Query: 515 ttcagcgcaaggaatacgatgcagacgtgaaacacttcctgcaggaagcaagaaatagat 574
           |||||| || ||||| ||||| ||  | |||||||| ||||  ||||||| ||| |||||
Sbjct: 412 ttcagcacagggaatgcgatggaggtgagaaacactccctgatggaagcaggaagtagat 353

                                                       
Query: 575 agcggtgctcacagcacgcccaaccttgtactgcggcgggagct 618
           ||| ||||| | ||||||  | ||||||||||||||||||||||
Sbjct: 352 agcagtgctgatagcacggtcgaccttgtactgcggcgggagct 309
to top
>dbj|AK099156.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067L05, full
           insert sequence
          Length = 920

 Score =  420 bits (212), Expect = e-114
 Identities = 401/464 (86%)
 Strand = Plus / Minus

                                                                       
Query: 155 ttacttgttggatggaataaggtaactgaggaagggttctgccttcggggcaatggtttt 214
           ||||||| |||| |||||||||||  ||||||| ||||||||||| || ||||||| |||
Sbjct: 712 ttacttggtggaaggaataaggtacttgaggaacggttctgccttaggagcaatggattt 653

                                                                       
Query: 215 cacatcatcaaaagaggccatttcgaaatcctcgtactcgaagccaggggcgcaagtgca 274
           |||||||||||||  |||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct: 652 cacatcatcaaaattggccatttcgaaatcctcatactggaagccaggggcacaagtgca 593

                                                                       
Query: 275 gccgacgagggagtagtgcttctcggggtctcgcttccgagagttgacaagatggctgcc 334
           ||| || |||||||| ||   ||| || || | ||| ||||| |||||||||  ||||||
Sbjct: 592 gccaactagggagtaatgaagctcaggatccctctttcgagacttgacaagaacgctgcc 533

                                                                       
Query: 335 atccgatgcaaacgactcgacatccaacgtagggaaagaaccaaaccacacatttggtgg 394
           ||| ||||| || || || |||||||  |||||||||||||| |||||||||||||||||
Sbjct: 532 atcagatgcgaatgattcaacatccagggtagggaaagaaccgaaccacacatttggtgg 473

                                                                       
Query: 395 cacggtgtactgggggcgctggccagcgtccaggtgtggaccaattacggtgaggtcaat 454
           |||||| |||||||| ||||||||||| |||||||||||||| || || |||||||||||
Sbjct: 472 cacggtatactggggacgctggccagcctccaggtgtggaccgatgacagtgaggtcaat 413

                                                                       
Query: 455 gtggccatcgtcgtgtagctcaaagaccgtgagaggctctcccttgtagaaatgccaggt 514
           ||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 412 gtgtccatcatcgtgtagctcaaagaccgtgagaggctctcccttgtagaagtgccatgt 353

                                                                       
Query: 515 ttcagcgcaaggaatacgatgcagacgtgaaacacttcctgcaggaagcaagaaatagat 574
           |||||| || ||||| ||||| ||  | |||||||| ||||  ||||||| ||| |||||
Sbjct: 352 ttcagcacagggaatgcgatggaggtgagaaacactccctgatggaagcaggaagtagat 293

                                                       
Query: 575 agcggtgctcacagcacgcccaaccttgtactgcggcgggagct 618
           ||| ||||| | ||||||  | ||||||||||||||||||||||
Sbjct: 292 agcagtgctgatagcacggtcgaccttgtactgcggcgggagct 249
to top
>dbj|AK061573.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-G01, full
           insert sequence
          Length = 992

 Score =  420 bits (212), Expect = e-114
 Identities = 401/464 (86%)
 Strand = Plus / Minus

                                                                       
Query: 155 ttacttgttggatggaataaggtaactgaggaagggttctgccttcggggcaatggtttt 214
           ||||||| |||| |||||||||||  ||||||| ||||||||||| || ||||||| |||
Sbjct: 772 ttacttggtggaaggaataaggtacttgaggaacggttctgccttaggagcaatggattt 713

                                                                       
Query: 215 cacatcatcaaaagaggccatttcgaaatcctcgtactcgaagccaggggcgcaagtgca 274
           |||||||||||||  |||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct: 712 cacatcatcaaaattggccatttcgaaatcctcatactggaagccaggggcacaagtgca 653

                                                                       
Query: 275 gccgacgagggagtagtgcttctcggggtctcgcttccgagagttgacaagatggctgcc 334
           ||| || |||||||| ||   ||| || || | ||| ||||| |||||||||  ||||||
Sbjct: 652 gccaactagggagtaatgaagctcaggatccctctttcgagacttgacaagaacgctgcc 593

                                                                       
Query: 335 atccgatgcaaacgactcgacatccaacgtagggaaagaaccaaaccacacatttggtgg 394
           ||| ||||| || || || |||||||  |||||||||||||| |||||||||||||||||
Sbjct: 592 atcagatgcgaatgattcaacatccagggtagggaaagaaccgaaccacacatttggtgg 533

                                                                       
Query: 395 cacggtgtactgggggcgctggccagcgtccaggtgtggaccaattacggtgaggtcaat 454
           |||||| |||||||| ||||||||||| |||||||||||||| || || |||||||||||
Sbjct: 532 cacggtatactggggacgctggccagcctccaggtgtggaccgatgacagtgaggtcaat 473

                                                                       
Query: 455 gtggccatcgtcgtgtagctcaaagaccgtgagaggctctcccttgtagaaatgccaggt 514
           ||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 472 gtgtccatcatcgtgtagctcaaagaccgtgagaggctctcccttgtagaagtgccatgt 413

                                                                       
Query: 515 ttcagcgcaaggaatacgatgcagacgtgaaacacttcctgcaggaagcaagaaatagat 574
           |||||| || ||||| ||||| ||  | |||||||| ||||  ||||||| ||| |||||
Sbjct: 412 ttcagcacagggaatgcgatggaggtgagaaacactccctgatggaagcaggaagtagat 353

                                                       
Query: 575 agcggtgctcacagcacgcccaaccttgtactgcggcgggagct 618
           ||| ||||| | ||||||  | ||||||||||||||||||||||
Sbjct: 352 agcagtgctgatagcacggtcgaccttgtactgcggcgggagct 309
to top
>gb|AY105251.1| Zea mays PCO080180 mRNA sequence
          Length = 947

 Score =  313 bits (158), Expect = 4e-82
 Identities = 368/438 (84%)
 Strand = Plus / Minus

                                                                       
Query: 181 tgaggaagggttctgccttcggggcaatggttttcacatcatcaaaagaggccatttcga 240
           ||||||| ||||| ||||| || || |||| | |||| || |||||   ||||||||| |
Sbjct: 708 tgaggaaaggttcagccttgggagcgatggatctcacgtcctcaaatttggccatttcaa 649

                                                                       
Query: 241 aatcctcgtactcgaagccaggggcgcaagtgcagccgacgagggagtagtgcttctcgg 300
           |||||||||||| |||||||||||| || |||||||| || |||||||| |||  ||| |
Sbjct: 648 aatcctcgtactggaagccaggggcacaggtgcagccaacaagggagtaatgcagctcag 589

                                                                       
Query: 301 ggtctcgcttccgagagttgacaagatggctgccatccgatgcaaacgactcgacatcca 360
           |||| | ||||||||| |||||||||  ||||||||| ||||| ||||||||||| || |
Sbjct: 588 ggtccctcttccgagacttgacaagaacgctgccatcagatgcgaacgactcgacgtcta 529

                                                                       
Query: 361 acgtagggaaagaaccaaaccacacatttggtggcacggtgtactgggggcgctggccag 420
             || ||||| || ||||||||||| || ||||||||||| ||||||||||||||||| |
Sbjct: 528 gtgtggggaacgacccaaaccacacgttcggtggcacggtatactgggggcgctggcctg 469

                                                                       
Query: 421 cgtccaggtgtggaccaattacggtgaggtcaatgtggccatcgtcgtgtagctcaaaga 480
           | || |||||||| ||||| || || ||||||||||| || |||||||| ||||| ||||
Sbjct: 468 cctcaaggtgtgggccaatgacagtaaggtcaatgtgaccgtcgtcgtgaagctcgaaga 409

                                                                       
Query: 481 ccgtgagaggctctcccttgtagaaatgccaggtttcagcgcaaggaatacgatgcagac 540
           ||||||||||||||||||||||||| |||||||||||||| || ||||| || || ||||
Sbjct: 408 ccgtgagaggctctcccttgtagaagtgccaggtttcagcacagggaatgcggtggagac 349

                                                                       
Query: 541 gtgaaacacttcctgcaggaagcaagaaatagatagcggtgctcacagcacgcccaacct 600
           | |||||||| ||||| ||||| | |||||| || |||||||| ||||||||    ||||
Sbjct: 348 gggaaacactccctgcgggaagtaggaaataaattgcggtgctaacagcacggtttacct 289

                             
Query: 601 tgtactgcggcgggagct 618
           |||| || ||||||||||
Sbjct: 288 tgtagtggggcgggagct 271
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  309 bits (156), Expect = 6e-81
 Identities = 285/328 (86%)
 Strand = Plus / Minus

                                                                            
Query: 155      ttacttgttggatggaataaggtaactgaggaagggttctgccttcggggcaatggtttt 214
                ||||||| |||| |||||||||||  ||||||| ||||||||||| || ||||||| |||
Sbjct: 22353554 ttacttggtggaaggaataaggtacttgaggaacggttctgccttaggagcaatggattt 22353495

                                                                            
Query: 215      cacatcatcaaaagaggccatttcgaaatcctcgtactcgaagccaggggcgcaagtgca 274
                |||||||||||||  |||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct: 22353494 cacatcatcaaaattggccatttcgaaatcctcatactggaagccaggggcacaagtgca 22353435

                                                                            
Query: 275      gccgacgagggagtagtgcttctcggggtctcgcttccgagagttgacaagatggctgcc 334
                ||| || |||||||| ||   ||| || || | ||| ||||| |||||||||  ||||||
Sbjct: 22353434 gccaactagggagtaatgaagctcaggatccctctttcgagacttgacaagaacgctgcc 22353375

                                                                            
Query: 335      atccgatgcaaacgactcgacatccaacgtagggaaagaaccaaaccacacatttggtgg 394
                ||| ||||| || || || |||||||  |||||||||||||| |||||||||||||||||
Sbjct: 22353374 atcagatgcgaatgattcaacatccagggtagggaaagaaccgaaccacacatttggtgg 22353315

                                                                            
Query: 395      cacggtgtactgggggcgctggccagcgtccaggtgtggaccaattacggtgaggtcaat 454
                |||||| |||||||| ||||||||||| |||||||||||||| || || |||||||||||
Sbjct: 22353314 cacggtatactggggacgctggccagcctccaggtgtggaccgatgacagtgaggtcaat 22353255

                                            
Query: 455      gtggccatcgtcgtgtagctcaaagacc 482
                ||| ||||| ||||||||||||||||||
Sbjct: 22353254 gtgtccatcatcgtgtagctcaaagacc 22353227



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                            
Query: 480      accgtgagaggctctcccttgtagaaatgccaggtttcagcgcaaggaatacgatgcaga 539
                |||||||||||||||||||||||||| ||||| |||||||| || ||||| ||||| || 
Sbjct: 22353114 accgtgagaggctctcccttgtagaagtgccatgtttcagcacagggaatgcgatggagg 22353055

                                                                     
Query: 540      cgtgaaacacttcctgcaggaagcaagaaatagatagcggtgctcacagcacg 592
                 | |||||||| ||||  ||||||| ||| |||||||| ||||| | ||||||
Sbjct: 22353054 tgagaaacactccctgatggaagcaggaagtagatagcagtgctgatagcacg 22353002
to top
>dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1144B06
          Length = 133689

 Score =  309 bits (156), Expect = 6e-81
 Identities = 285/328 (86%)
 Strand = Plus / Minus

                                                                         
Query: 155   ttacttgttggatggaataaggtaactgaggaagggttctgccttcggggcaatggtttt 214
             ||||||| |||| |||||||||||  ||||||| ||||||||||| || ||||||| |||
Sbjct: 50537 ttacttggtggaaggaataaggtacttgaggaacggttctgccttaggagcaatggattt 50478

                                                                         
Query: 215   cacatcatcaaaagaggccatttcgaaatcctcgtactcgaagccaggggcgcaagtgca 274
             |||||||||||||  |||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct: 50477 cacatcatcaaaattggccatttcgaaatcctcatactggaagccaggggcacaagtgca 50418

                                                                         
Query: 275   gccgacgagggagtagtgcttctcggggtctcgcttccgagagttgacaagatggctgcc 334
             ||| || |||||||| ||   ||| || || | ||| ||||| |||||||||  ||||||
Sbjct: 50417 gccaactagggagtaatgaagctcaggatccctctttcgagacttgacaagaacgctgcc 50358

                                                                         
Query: 335   atccgatgcaaacgactcgacatccaacgtagggaaagaaccaaaccacacatttggtgg 394
             ||| ||||| || || || |||||||  |||||||||||||| |||||||||||||||||
Sbjct: 50357 atcagatgcgaatgattcaacatccagggtagggaaagaaccgaaccacacatttggtgg 50298

                                                                         
Query: 395   cacggtgtactgggggcgctggccagcgtccaggtgtggaccaattacggtgaggtcaat 454
             |||||| |||||||| ||||||||||| |||||||||||||| || || |||||||||||
Sbjct: 50297 cacggtatactggggacgctggccagcctccaggtgtggaccgatgacagtgaggtcaat 50238

                                         
Query: 455   gtggccatcgtcgtgtagctcaaagacc 482
             ||| ||||| ||||||||||||||||||
Sbjct: 50237 gtgtccatcatcgtgtagctcaaagacc 50210



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                         
Query: 480   accgtgagaggctctcccttgtagaaatgccaggtttcagcgcaaggaatacgatgcaga 539
             |||||||||||||||||||||||||| ||||| |||||||| || ||||| ||||| || 
Sbjct: 50097 accgtgagaggctctcccttgtagaagtgccatgtttcagcacagggaatgcgatggagg 50038

                                                                  
Query: 540   cgtgaaacacttcctgcaggaagcaagaaatagatagcggtgctcacagcacg 592
              | |||||||| ||||  ||||||| ||| |||||||| ||||| | ||||||
Sbjct: 50037 tgagaaacactccctgatggaagcaggaagtagatagcagtgctgatagcacg 49985
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                          
Query: 479     gaccgtgagaggctctcccttgtagaaatgccaggtttcagcgcaaggaatacgatgca 537
               |||||||||||| || ||| ||||| | |||||||| ||||| ||||| || |||||||
Sbjct: 5016918 gaccgtgagaggttcccccatgtagtagtgccaggtctcagcacaagggatgcgatgca 5016976



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                                
Query: 478     agaccgtgagaggctctcccttgtagaaatgccaggtttcagcgcaagg 526
               ||||||||||||| || ||| ||||| | |||||||| ||||| |||||
Sbjct: 5013772 agaccgtgagaggttcccccatgtagtagtgccaggtctcagcacaagg 5013820
to top
>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1172G12
          Length = 171974

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                        
Query: 479   gaccgtgagaggctctcccttgtagaaatgccaggtttcagcgcaaggaatacgatgca 537
             |||||||||||| || ||| ||||| | |||||||| ||||| ||||| || |||||||
Sbjct: 59032 gaccgtgagaggttcccccatgtagtagtgccaggtctcagcacaagggatgcgatgca 59090



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                              
Query: 478   agaccgtgagaggctctcccttgtagaaatgccaggtttcagcgcaagg 526
             ||||||||||||| || ||| ||||| | |||||||| ||||| |||||
Sbjct: 55886 agaccgtgagaggttcccccatgtagtagtgccaggtctcagcacaagg 55934
to top
>dbj|AK070593.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058D05, full
            insert sequence
          Length = 2512

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 479  gaccgtgagaggctctcccttgtagaaatgccaggtttcagcgcaaggaatacgatgca 537
            |||||||||||| || ||| ||||| | |||||||| ||||| ||||| || |||||||
Sbjct: 1958 gaccgtgagaggttcccccatgtagtagtgccaggtctcagcacaagggatgcgatgca 1900
to top
>ref|XM_472010.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1902

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 314 agagttgacaagatggctgcca 335
           ||||||||||||||||||||||
Sbjct: 978 agagttgacaagatggctgcca 957
to top
>emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02,
             complete sequence
          Length = 172435

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 314   agagttgacaagatggctgcca 335
             ||||||||||||||||||||||
Sbjct: 98122 agagttgacaagatggctgcca 98101
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 314      agagttgacaagatggctgcca 335
                ||||||||||||||||||||||
Sbjct: 16568889 agagttgacaagatggctgcca 16568868
to top
>dbj|AK102622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099H13, full
           insert sequence
          Length = 2291

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 314 agagttgacaagatggctgcca 335
           ||||||||||||||||||||||
Sbjct: 979 agagttgacaagatggctgcca 958
to top
>gb|AC139863.5| Mus musculus chromosome 14, clone RP23-19M21, complete sequence
          Length = 194221

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 209    ggttttcacatcatcaaaaga 229
              |||||||||||||||||||||
Sbjct: 158130 ggttttcacatcatcaaaaga 158110
to top
>gb|AC134791.8| Mus musculus chromosome 14, clone RP23-377F8, complete sequence
          Length = 210013

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 209   ggttttcacatcatcaaaaga 229
             |||||||||||||||||||||
Sbjct: 70612 ggttttcacatcatcaaaaga 70592
to top
>gb|AC082648.6| Homo sapiens BAC clone CTD-2057N4 from 7, complete sequence
          Length = 50485

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 548   acttcctgcaggaagcaagaa 568
             |||||||||||||||||||||
Sbjct: 11138 acttcctgcaggaagcaagaa 11158
to top
>gb|AC079763.7| Homo sapiens BAC clone RP11-153N17 from 7, complete sequence
          Length = 157848

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 548   acttcctgcaggaagcaagaa 568
             |||||||||||||||||||||
Sbjct: 10895 acttcctgcaggaagcaagaa 10915
to top
>gb|AC154380.2| Mus musculus BAC clone RP23-52F1 from chromosome 14, complete sequence
          Length = 244524

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 209   ggttttcacatcatcaaaaga 229
             |||||||||||||||||||||
Sbjct: 48608 ggttttcacatcatcaaaaga 48588
to top
>gb|AC146446.3| Pan troglodytes BAC clone RP43-5P22 from chromosome 7, complete
             sequence
          Length = 164152

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 548   acttcctgcaggaagcaagaa 568
             |||||||||||||||||||||
Sbjct: 16691 acttcctgcaggaagcaagaa 16711
to top
>emb|BX571802.15| Zebrafish DNA sequence from clone CH211-197A16 in linkage group 10,
             complete sequence
          Length = 196999

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   agaggccatttcgaaatcct 246
             ||||||||||||||||||||
Sbjct: 84443 agaggccatttcgaaatcct 84424
to top
>gb|AC122379.4| Mus musculus BAC clone RP23-476A7 from chromosome 13, complete sequence
          Length = 171737

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   tgacaagatggctgccatcc 338
             ||||||||||||||||||||
Sbjct: 99544 tgacaagatggctgccatcc 99525
to top
>ref|XM_789318.1| PREDICTED: Strongylocentrotus purpuratus similar to Est1p-like
            protein A (LOC589683), partial mRNA
          Length = 4816

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 492  tctcccttgtagaaatgcca 511
            ||||||||||||||||||||
Sbjct: 3040 tctcccttgtagaaatgcca 3021
to top
>gb|AC131150.8| Homo sapiens 3 BAC RP11-637J15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 48977

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 82   aaagccaatacaggcagggc 101
            ||||||||||||||||||||
Sbjct: 2946 aaagccaatacaggcagggc 2965
to top
>gb|AC090610.6| Homo sapiens chromosome 17, clone RP11-493I24, complete sequence
          Length = 185980

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 407   ggggcgctggccagcgtccaggtg 430
             |||||| |||||||||||||||||
Sbjct: 63201 ggggcggtggccagcgtccaggtg 63224
to top
>gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold
          Length = 1570569

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    gaataaggtaactgaggaag 188
              ||||||||||||||||||||
Sbjct: 714750 gaataaggtaactgaggaag 714731
to top
>gb|AC090676.11| Homo sapiens 12 BAC RP11-654D6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 139802

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    cagagtgataagactaaaaa 47
             ||||||||||||||||||||
Sbjct: 73406 cagagtgataagactaaaaa 73425
to top
>gb|AC079117.6| Homo sapiens BAC clone RP11-122D13 from 2, complete sequence
          Length = 160324

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 535    gcagacgtgaaacacttcctgcag 558
              |||||||||| |||||||||||||
Sbjct: 142153 gcagacgtgatacacttcctgcag 142130
to top
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 408     gggcgctggccagcgtccag 427
               ||||||||||||||||||||
Sbjct: 4301071 gggcgctggccagcgtccag 4301052


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,145,594
Number of Sequences: 3902068
Number of extensions: 5145594
Number of successful extensions: 88032
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87855
Number of HSP's gapped (non-prelim): 171
length of query: 618
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 595
effective length of database: 17,143,297,704
effective search space: 10200262133880
effective search space used: 10200262133880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top