ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19n13 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 144 bits (363), Expect(2) = 2e-39 Identities = 75/91 (82%), Positives = 83/91 (91%), Gaps = 1/91 (1%) Frame = -1 Query: 618 STKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVH 439 + +A+SCDLKELV+KFIPEVIGKEIEKATSSIFPLQNV+VRKVKILKAPKFDLGKLMEVH Sbjct: 172 ANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 231 Query: 438 GDY-KEDVGVKLDRPDGDEVIPGAEEVAAAE 349 GDY KED+G KLDRP DE + G +EVAAAE Sbjct: 232 GDYAKEDIGTKLDRPAEDEAMAG-QEVAAAE 261 Score = 38.5 bits (88), Expect(2) = 2e-39 Identities = 21/25 (84%), Positives = 21/25 (84%), Gaps = 2/25 (8%) Frame = -3 Query: 667 QASQIRQIRRKMVEIMVNQ--SCKL 599 QASQIRQIRRKMVEIM NQ SC L Sbjct: 156 QASQIRQIRRKMVEIMANQASSCDL 180
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 136 bits (343), Expect(2) = 3e-35 Identities = 68/88 (77%), Positives = 76/88 (86%) Frame = -1 Query: 615 TKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHG 436 T+A +CDLKELV KFIPE IG+EIEKATSSI+PLQNV++RKVKILKAPKFD+GKLMEVHG Sbjct: 173 TQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHG 232 Query: 435 DYKEDVGVKLDRPDGDEVIPGAEEVAAA 352 DY EDVGVKLDRP +E P A EV A Sbjct: 233 DYSEDVGVKLDRP-AEEAAPEATEVIGA 259 Score = 32.0 bits (71), Expect(2) = 3e-35 Identities = 15/20 (75%), Positives = 18/20 (90%) Frame = -3 Query: 667 QASQIRQIRRKMVEIMVNQS 608 Q+SQI+QIRRKM EIMV Q+ Sbjct: 156 QSSQIKQIRRKMREIMVTQA 175
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 130 bits (328), Expect(2) = 8e-35 Identities = 63/86 (73%), Positives = 72/86 (83%) Frame = -1 Query: 612 KAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 433 +A SCDLK+LV KFIPE IG+EIEKATSSI+PLQNV++RKVKILKAPKFDLGKLMEVHGD Sbjct: 174 QAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 233 Query: 432 YKEDVGVKLDRPDGDEVIPGAEEVAA 355 Y ED+G KLDRP + V E + A Sbjct: 234 YNEDIGTKLDRPAEEAVAEPTEVIGA 259 Score = 36.2 bits (82), Expect(2) = 8e-35 Identities = 20/25 (80%), Positives = 21/25 (84%), Gaps = 2/25 (8%) Frame = -3 Query: 667 QASQIRQIRRKMVEIMVN--QSCKL 599 Q+SQIRQIRRKM EIMVN QSC L Sbjct: 156 QSSQIRQIRRKMREIMVNQAQSCDL 180
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 125 bits (315), Expect(2) = 2e-32 Identities = 62/88 (70%), Positives = 73/88 (82%), Gaps = 1/88 (1%) Frame = -1 Query: 612 KAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 433 +A+SCDLKELV KFIPE IG+EIEKAT I+PLQNV++RKVKILKAPKFDLGKLMEVHGD Sbjct: 174 EASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 233 Query: 432 Y-KEDVGVKLDRPDGDEVIPGAEEVAAA 352 Y EDVGVK+DRP + ++ E+ A Sbjct: 234 YTAEDVGVKVDRPADETMVEEPTEIIGA 261 Score = 33.1 bits (74), Expect(2) = 2e-32 Identities = 18/25 (72%), Positives = 20/25 (80%), Gaps = 2/25 (8%) Frame = -3 Query: 667 QASQIRQIRRKMVEIMVNQ--SCKL 599 Q+SQIRQIRRKM EIMV + SC L Sbjct: 156 QSSQIRQIRRKMSEIMVKEASSCDL 180
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 124 bits (312), Expect = 2e-28 Identities = 69/105 (65%), Positives = 80/105 (76%), Gaps = 1/105 (0%) Frame = -1 Query: 663 QVRSDRSAGRWLRSWSTKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 484 Q+R RS R + +A+SCDLKELV KFIPE IGK+IEKAT I+PLQNV++RKVKI Sbjct: 159 QIRQIRSKMREIMI-KEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKI 217 Query: 483 LKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAA 352 LKAPKFDL KLMEVHGDY EDVGVK+DRP DEV+ E+ A Sbjct: 218 LKAPKFDLRKLMEVHGDYTAEDVGVKVDRP-ADEVVEEPTEIIGA 261 Score = 29.6 bits (65), Expect = 8.6 Identities = 16/26 (61%), Positives = 19/26 (73%), Gaps = 3/26 (11%) Frame = -3 Query: 667 QASQIRQIRRKMVEIMVNQ---SCKL 599 Q+SQIRQIR KM EIM+ + SC L Sbjct: 156 QSSQIRQIRSKMREIMIKEEASSCDL 181
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 101 bits (251), Expect(2) = 3e-22 Identities = 50/70 (71%), Positives = 60/70 (85%), Gaps = 1/70 (1%) Frame = -1 Query: 612 KAASCDLKELVNKFIPEVIGKEIEKATSS-IFPLQNVYVRKVKILKAPKFDLGKLMEVHG 436 +A +CDLKELV KFIPEVIGKEI++ S I+PLQ+ ++RKVKILKAPKFDL KLMEVHG Sbjct: 171 EAQTCDLKELVAKFIPEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHG 230 Query: 435 DYKEDVGVKL 406 DY E+VG K+ Sbjct: 231 DYNEEVGAKI 240 Score = 23.9 bits (50), Expect(2) = 3e-22 Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 2/25 (8%) Frame = -3 Query: 667 QASQIRQIRRKMVEIMVN--QSCKL 599 Q+SQI IRRKM EIMV Q+C L Sbjct: 154 QSSQIA-IRRKMREIMVKEAQTCDL 177
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 94.0 bits (232), Expect(2) = 4e-21 Identities = 46/69 (66%), Positives = 57/69 (82%) Frame = -1 Query: 612 KAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 433 + +SC ++ELV K IPEVIG+EIE+AT SIFPLQNV VRKVKILKAPK D KL+E+HG+ Sbjct: 174 QTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELHGE 233 Query: 432 YKEDVGVKL 406 +DVG K+ Sbjct: 234 -SQDVGTKV 241 Score = 27.3 bits (59), Expect(2) = 4e-21 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 2/25 (8%) Frame = -3 Query: 667 QASQIRQIRRKMVEIMVNQ--SCKL 599 Q+SQIR IR+KM +++ NQ SC + Sbjct: 156 QSSQIRAIRQKMFQVIQNQTSSCSM 180
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 92.0 bits (227), Expect(2) = 1e-20 Identities = 46/78 (58%), Positives = 59/78 (75%), Gaps = 7/78 (8%) Frame = -1 Query: 597 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD----- 433 DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ Sbjct: 179 DLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAG 238 Query: 432 --YKEDVGVKLDRPDGDE 385 ++ G K++R DG E Sbjct: 239 KPSGDEAGAKVERADGYE 256 Score = 27.3 bits (59), Expect(2) = 1e-20 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = -3 Query: 667 QASQIRQIRRKMVEIMVNQ 611 Q Q+RQIR+KM+EIM + Sbjct: 156 QHQQVRQIRKKMMEIMTGE 174
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 92.0 bits (227), Expect(2) = 2e-20 Identities = 46/78 (58%), Positives = 59/78 (75%), Gaps = 7/78 (8%) Frame = -1 Query: 597 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD----- 433 DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ Sbjct: 179 DLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGTG 238 Query: 432 --YKEDVGVKLDRPDGDE 385 ++ G K++R DG E Sbjct: 239 KPAGDETGAKVERADGYE 256 Score = 26.6 bits (57), Expect(2) = 2e-20 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -3 Query: 667 QASQIRQIRRKMVEIMVNQ 611 Q Q+RQIR+KM EIM + Sbjct: 156 QHQQVRQIRKKMFEIMTRE 174
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 91.7 bits (226), Expect(2) = 8e-20 Identities = 45/69 (65%), Positives = 57/69 (82%) Frame = -1 Query: 612 KAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 433 +A C +KELV K IPEVIG+ IEKAT++I+PLQNV+VRKVKILKAPK D KL+E+HG+ Sbjct: 174 QANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELHGE 233 Query: 432 YKEDVGVKL 406 +DVG K+ Sbjct: 234 -SQDVGSKV 241 Score = 25.0 bits (53), Expect(2) = 8e-20 Identities = 10/20 (50%), Positives = 16/20 (80%) Frame = -3 Query: 667 QASQIRQIRRKMVEIMVNQS 608 Q+SQIR I +KM +++ NQ+ Sbjct: 156 QSSQIRAIHQKMFQVIQNQA 175
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 93.6 bits (231), Expect = 5e-19 Identities = 51/103 (49%), Positives = 69/103 (66%), Gaps = 9/103 (8%) Frame = -1 Query: 666 KQVRSDRSAGRWLRSWSTKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 487 +QVR R + + + + + DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK Sbjct: 158 QQVRQIRK--KMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVK 215 Query: 486 ILKAPKFDLGKLMEVHGD---------YKEDVGVKLDRPDGDE 385 +LK PKF+LGKLME+HG+ +D G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVERADGYE 258
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 93.2 bits (230), Expect = 6e-19 Identities = 50/103 (48%), Positives = 69/103 (66%), Gaps = 9/103 (8%) Frame = -1 Query: 666 KQVRSDRSAGRWLRSWSTKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 487 +QVR R + + + + + DLKE+VNK IP+ +GK+IEKA SI+PL +VYVRKVK Sbjct: 158 QQVRQIRK--KMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVK 215 Query: 486 ILKAPKFDLGKLMEVHGD---------YKEDVGVKLDRPDGDE 385 +LK PKF+LGKLME+HG+ +D G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVERADGYE 258
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 92.8 bits (229), Expect = 8e-19 Identities = 50/101 (49%), Positives = 69/101 (68%), Gaps = 7/101 (6%) Frame = -1 Query: 666 KQVRSDRSAGRWLRSWSTKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 487 +QVR R + + + + + DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK Sbjct: 158 QQVRQIRK--KMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVK 215 Query: 486 ILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 385 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVERADGYE 256
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 92.4 bits (228), Expect = 1e-18 Identities = 50/101 (49%), Positives = 69/101 (68%), Gaps = 7/101 (6%) Frame = -1 Query: 666 KQVRSDRSAGRWLRSWSTKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 487 +QVR R + + + + + DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK Sbjct: 158 QQVRQIRK--KMVEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVK 215 Query: 486 ILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 385 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVERADGYE 256
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 92.4 bits (228), Expect = 1e-18 Identities = 50/104 (48%), Positives = 69/104 (66%), Gaps = 10/104 (9%) Frame = -1 Query: 666 KQVRSDRSAGRWLRSWSTKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 487 +QVR R + + + + + DLKE+VNK IP+ +GK+IEKA SI+PL +VYVRKVK Sbjct: 158 QQVRQIRK--KMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVK 215 Query: 486 ILKAPKFDLGKLMEVHGD----------YKEDVGVKLDRPDGDE 385 +LK PKF+LGKLME+HG+ + D G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERADGYE 259
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 91.7 bits (226), Expect = 2e-18 Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 7/101 (6%) Frame = -1 Query: 666 KQVRSDRSAGRWLRSWSTKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 487 +QVR R + + + + + DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK Sbjct: 155 QQVRQIRK--KMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 212 Query: 486 ILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 385 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 213 MLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 253
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 91.7 bits (226), Expect = 2e-18 Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 7/101 (6%) Frame = -1 Query: 666 KQVRSDRSAGRWLRSWSTKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 487 +QVR R + + + + + DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK Sbjct: 158 QQVRQIRK--KMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 215 Query: 486 ILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 385 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 91.7 bits (226), Expect = 2e-18 Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 7/101 (6%) Frame = -1 Query: 666 KQVRSDRSAGRWLRSWSTKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 487 +QVR R + + + + + DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK Sbjct: 158 QQVRQIRK--KMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 215 Query: 486 ILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 385 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 91.7 bits (226), Expect = 2e-18 Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 7/101 (6%) Frame = -1 Query: 666 KQVRSDRSAGRWLRSWSTKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 487 +QVR R + + + + + DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK Sbjct: 158 QQVRQIRK--KMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 215 Query: 486 ILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 385 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 91.3 bits (225), Expect = 2e-18 Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 7/101 (6%) Frame = -1 Query: 666 KQVRSDRSAGRWLRSWSTKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 487 +QVR R + + + + + DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK Sbjct: 158 QQVRQIRK--KMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 215 Query: 486 ILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 385 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERADGYE 256
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 91.3 bits (225), Expect = 2e-18 Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 7/101 (6%) Frame = -1 Query: 666 KQVRSDRSAGRWLRSWSTKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 487 +QVR R + + + + + DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK Sbjct: 158 QQVRQIRK--KMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 215 Query: 486 ILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 385 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYE 256
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 90.5 bits (223), Expect = 4e-18 Identities = 48/101 (47%), Positives = 69/101 (68%), Gaps = 7/101 (6%) Frame = -1 Query: 666 KQVRSDRSAGRWLRSWSTKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 487 +QVR R + + + + + DLKE+VNK IP+ IGK++EKA SI+PL +V+VRKVK Sbjct: 158 QQVRQIRK--KMMEIMTREVQTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHDVFVRKVK 215 Query: 486 ILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 385 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 85.5 bits (210), Expect(2) = 2e-17 Identities = 43/86 (50%), Positives = 59/86 (68%), Gaps = 8/86 (9%) Frame = -1 Query: 618 STKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVH 439 S + +S D+KE+VNK IP+ IGK+IEK+ I+PL +V + KVK+LK PKFD+GKLME+H Sbjct: 172 SREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELH 231 Query: 438 GD--------YKEDVGVKLDRPDGDE 385 G+ + G K+DR DG E Sbjct: 232 GEGSTTTSKGVTSEGGEKVDRVDGYE 257 Score = 23.1 bits (48), Expect(2) = 2e-17 Identities = 9/16 (56%), Positives = 14/16 (87%) Frame = -3 Query: 667 QASQIRQIRRKMVEIM 620 Q +Q++ IR+KMVEI+ Sbjct: 156 QHAQVKAIRKKMVEIV 171
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 87.4 bits (215), Expect = 3e-17 Identities = 43/78 (55%), Positives = 56/78 (71%), Gaps = 2/78 (2%) Frame = -1 Query: 612 KAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 433 + CDLKE+V+K IP+ IGK+IEK S ++PLQ VY+RKVKI+K PK DLG+L ++HGD Sbjct: 172 EVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHGD 231 Query: 432 --YKEDVGVKLDRPDGDE 385 G K+DRPD E Sbjct: 232 SITVGADGEKVDRPDDYE 249
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 84.0 bits (206), Expect(2) = 5e-17 Identities = 41/79 (51%), Positives = 58/79 (73%), Gaps = 1/79 (1%) Frame = -1 Query: 612 KAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 433 + ++C L +L +K IPEVIG+EIEK+T +IFPLQNV++RKVK+LK PKFD G L+ +HG+ Sbjct: 174 EVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDWGSLLALHGE 233 Query: 432 -YKEDVGVKLDRPDGDEVI 379 E+ G K+ D V+ Sbjct: 234 GSTEEKGKKVSSGFKDVVL 252 Score = 23.5 bits (49), Expect(2) = 5e-17 Identities = 8/16 (50%), Positives = 15/16 (93%) Frame = -3 Query: 667 QASQIRQIRRKMVEIM 620 Q+S++R+ R+KM+EI+ Sbjct: 156 QSSKLREARKKMIEII 171
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 78.6 bits (192), Expect = 2e-14 Identities = 36/54 (66%), Positives = 44/54 (81%) Frame = -1 Query: 594 LKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 433 L +L +K IPEVI KEIE AT IFPLQN++VRKVK+LK PKFD+G LM +HG+ Sbjct: 180 LAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 78.6 bits (192), Expect = 2e-14 Identities = 36/54 (66%), Positives = 44/54 (81%) Frame = -1 Query: 594 LKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 433 L +L +K IPEVI KEIE AT IFPLQN++VRKVK+LK PKFD+G LM +HG+ Sbjct: 180 LAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 78.2 bits (191), Expect = 2e-14 Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 8/86 (9%) Frame = -1 Query: 618 STKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVH 439 + + + DLK+LVNK + I K+IEK+ I+PL +VY+RKVK+LK P+FD+ KL+E+H Sbjct: 175 TNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELH 234 Query: 438 GD--------YKEDVGVKLDRPDGDE 385 GD G +DRP+G E Sbjct: 235 GDGGGKSVEAVVSSEGAVIDRPEGYE 260
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 75.1 bits (183), Expect = 2e-13 Identities = 33/57 (57%), Positives = 44/57 (77%) Frame = -1 Query: 603 SCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 433 S DLK +V K +P+ I K+IEKA ++PL +VY+RKVK+LK P+FDL LME+HGD Sbjct: 180 STDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGD 236
>RS3A_PYRFU (Q8TZE1) 30S ribosomal protein S3Ae| Length = 198 Score = 35.4 bits (80), Expect = 0.16 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = -1 Query: 612 KAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 469 KA + K+ V + + I EI K I+PL+ +RK+K+L+ P+ Sbjct: 148 KAEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEPQ 195
>RS3A_SULAC (Q4JB17) 30S ribosomal protein S3Ae| Length = 197 Score = 34.7 bits (78), Expect = 0.27 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = -1 Query: 612 KAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 469 KA D + V I + +I + I+PL+ V + K K+LKAPK Sbjct: 149 KAEESDFDQFVQDVIFGKLSNDIFQEAKKIYPLRKVEIEKTKLLKAPK 196
>RS3A_SULTO (Q975F8) 30S ribosomal protein S3Ae| Length = 193 Score = 34.7 bits (78), Expect = 0.27 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = -1 Query: 618 STKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 472 ST+A+ E V + + +I + I+PL+ V V K K+LKAP Sbjct: 144 STRASETTFDEFVQDIVFGKLSNDIFQQAKKIYPLRKVEVEKTKLLKAP 192
>RS3A_SULSO (Q9UXD4) 30S ribosomal protein S3Ae| Length = 208 Score = 34.7 bits (78), Expect = 0.27 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = -1 Query: 618 STKAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLME 445 S KA+ + + + + EI +A I+PL+ + K K+LK P+ +LGK +E Sbjct: 145 SKKASELSFDDFTQEVVFGRLANEIFEAAKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201
>RS3A_PYRAB (Q9V2K7) 30S ribosomal protein S3Ae| Length = 199 Score = 34.3 bits (77), Expect = 0.35 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = -1 Query: 612 KAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 469 KA + K+ V + + I EI K I+PL+ +RK+K+L P+ Sbjct: 149 KAEELNFKDFVLEAVNGKIAAEIAKEAKKIYPLKKAEIRKIKVLGEPE 196
>RS3A_PYRHO (O57803) 30S ribosomal protein S3Ae| Length = 199 Score = 33.5 bits (75), Expect = 0.59 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = -1 Query: 612 KAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 469 KA + K+ V + + I EI K I+PL+ +RK+K+L P+ Sbjct: 150 KAEELNFKDFVLEAVNGKIAAEIAKEGKKIYPLKKAEIRKIKVLGEPE 197
>RS3A_PYRKO (Q5JGM4) 30S ribosomal protein S3Ae| Length = 200 Score = 31.6 bits (70), Expect = 2.3 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = -1 Query: 612 KAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 472 KA + + V + + I EI K I+P++ VRK+K+L P Sbjct: 152 KAEELNFADFVLQSVNGQIASEIAKEARKIYPIKRAEVRKIKVLAEP 198
>RS3A_METKA (Q8TVD1) 30S ribosomal protein S3Ae| Length = 211 Score = 31.2 bits (69), Expect = 2.9 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 4/50 (8%) Frame = -1 Query: 609 AASCDLKELVNKFIP----EVIGKEIEKATSSIFPLQNVYVRKVKILKAP 472 A CD E + + + E I ++I++A I+P++ +RK ++L+ P Sbjct: 142 AKECDFDEFIRRCLSISEEESIPEQIKEAGRKIYPIRQAEIRKTEVLEEP 191
>NAL13_HUMAN (Q86W25) NACHT-, LRR- and PYD-containing protein 13| (Nucleotide-binding oligomerization domain protein 14) Length = 1043 Score = 30.8 bits (68), Expect = 3.8 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Frame = +3 Query: 75 LEITTNNTVEHKVHANIKHIWQE*TKYLVSTHNLHPESNTNKTR*LNA--G*ECRQKYSR 248 LEI + + ++HA W LV+ NLH +N ++ G K R Sbjct: 700 LEILETSKFDSRMHA-----WNSICSTLVTNENLHELDLSNSKLHASSVKGLCLALKNPR 754 Query: 249 NQPSKLTTKFTTPRWHIYHLLDKKQQNS 332 + KLT K TP W + L+ Q NS Sbjct: 755 CKVQKLTCKSVTPEWVLQDLIIALQGNS 782
>RS3A_ARCFU (O27964) 30S ribosomal protein S3Ae| Length = 211 Score = 30.4 bits (67), Expect = 5.0 Identities = 13/47 (27%), Positives = 27/47 (57%) Frame = -1 Query: 612 KAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 472 KA+S + + + + + + EI K I+P++ V +RK+++L P Sbjct: 151 KASSLNFVQFLQECVLGKVPAEIYKNAKKIYPIRRVEIRKIELLAEP 197
>RPOB_STRAW (Q82DQ5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1181 Score = 29.6 bits (65), Expect = 8.6 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -1 Query: 561 VIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 385 ++GK K + + P + + +R + KA + L HG+ + +GV++ DR +GDE Sbjct: 808 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 866 Query: 384 VIPGAEEV 361 + PG ++ Sbjct: 867 LPPGVNQL 874
>RPOB_STRCO (Q9L0L0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1161 Score = 29.6 bits (65), Expect = 8.6 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -1 Query: 561 VIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 385 ++GK K + + P + + +R + KA + L HG+ + +GV++ DR +GDE Sbjct: 788 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 846 Query: 384 VIPGAEEV 361 + PG ++ Sbjct: 847 LPPGVNQL 854 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,279,825 Number of Sequences: 219361 Number of extensions: 1511625 Number of successful extensions: 3633 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 3507 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3629 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
