ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19n12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 3e-08 Identities = 74/86 (86%), Gaps = 1/86 (1%) Strand = Plus / Minus Query: 40 ttaattgagttgtaatacataatacagtgagatttgagaaggcatcatcattcatctagt 99 ||||||||| | |||||||||||||| ||||||||||||| |||||| ||| ||||| Sbjct: 27356373 ttaattgagctataatacataatacaatgagatttgagaaagcatcacggatcagctagt 27356314 Query: 100 tctacagattccaacatcagtaacag 125 | || ||||||||| ||||||||||| Sbjct: 27356313 t-taaagattccaatatcagtaacag 27356289 Score = 60.0 bits (30), Expect = 8e-06 Identities = 102/126 (80%) Strand = Plus / Minus Query: 421 atcacatcaactggggatctgaacgagcatagaaatcgttcctggtagagagcaaacaca 480 |||||||||||| | |||| || || ||||||||| | ||||||| ||||||||||| Sbjct: 27355963 atcacatcaactcgagatccgattgaacatagaaattgaacctggtatcgagcaaacaca 27355904 Query: 481 taatcttttaaagttgcaatgaagtgtggtccctgcagtgagatcttgtggcatcaaaac 540 |||||| || | ||||||||||||| || |||||||| |||| |||| ||||| || Sbjct: 27355903 taatctcatataactgcaatgaagtgtagttggtgcagtgatatctggtggtatcaatac 27355844 Query: 541 accatc 546 |||||| Sbjct: 27355843 accatc 27355838 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 237 cataaccgataaaggagatttatttgcagaaggctagc 274 ||||||| ||||||| ||||||||||||||||||||| Sbjct: 27356176 cataaccaataaaggcaatttatttgcagaaggctagc 27356139
>dbj|AP004194.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0014E08 Length = 144219 Score = 67.9 bits (34), Expect = 3e-08 Identities = 74/86 (86%), Gaps = 1/86 (1%) Strand = Plus / Minus Query: 40 ttaattgagttgtaatacataatacagtgagatttgagaaggcatcatcattcatctagt 99 ||||||||| | |||||||||||||| ||||||||||||| |||||| ||| ||||| Sbjct: 39268 ttaattgagctataatacataatacaatgagatttgagaaagcatcacggatcagctagt 39209 Query: 100 tctacagattccaacatcagtaacag 125 | || ||||||||| ||||||||||| Sbjct: 39208 t-taaagattccaatatcagtaacag 39184 Score = 60.0 bits (30), Expect = 8e-06 Identities = 102/126 (80%) Strand = Plus / Minus Query: 421 atcacatcaactggggatctgaacgagcatagaaatcgttcctggtagagagcaaacaca 480 |||||||||||| | |||| || || ||||||||| | ||||||| ||||||||||| Sbjct: 38858 atcacatcaactcgagatccgattgaacatagaaattgaacctggtatcgagcaaacaca 38799 Query: 481 taatcttttaaagttgcaatgaagtgtggtccctgcagtgagatcttgtggcatcaaaac 540 |||||| || | ||||||||||||| || |||||||| |||| |||| ||||| || Sbjct: 38798 taatctcatataactgcaatgaagtgtagttggtgcagtgatatctggtggtatcaatac 38739 Query: 541 accatc 546 |||||| Sbjct: 38738 accatc 38733 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 237 cataaccgataaaggagatttatttgcagaaggctagc 274 ||||||| ||||||| ||||||||||||||||||||| Sbjct: 39071 cataaccaataaaggcaatttatttgcagaaggctagc 39034
>dbj|AP003760.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0063G05 Length = 182681 Score = 67.9 bits (34), Expect = 3e-08 Identities = 74/86 (86%), Gaps = 1/86 (1%) Strand = Plus / Minus Query: 40 ttaattgagttgtaatacataatacagtgagatttgagaaggcatcatcattcatctagt 99 ||||||||| | |||||||||||||| ||||||||||||| |||||| ||| ||||| Sbjct: 136890 ttaattgagctataatacataatacaatgagatttgagaaagcatcacggatcagctagt 136831 Query: 100 tctacagattccaacatcagtaacag 125 | || ||||||||| ||||||||||| Sbjct: 136830 t-taaagattccaatatcagtaacag 136806 Score = 60.0 bits (30), Expect = 8e-06 Identities = 102/126 (80%) Strand = Plus / Minus Query: 421 atcacatcaactggggatctgaacgagcatagaaatcgttcctggtagagagcaaacaca 480 |||||||||||| | |||| || || ||||||||| | ||||||| ||||||||||| Sbjct: 136480 atcacatcaactcgagatccgattgaacatagaaattgaacctggtatcgagcaaacaca 136421 Query: 481 taatcttttaaagttgcaatgaagtgtggtccctgcagtgagatcttgtggcatcaaaac 540 |||||| || | ||||||||||||| || |||||||| |||| |||| ||||| || Sbjct: 136420 taatctcatataactgcaatgaagtgtagttggtgcagtgatatctggtggtatcaatac 136361 Query: 541 accatc 546 |||||| Sbjct: 136360 accatc 136355 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 237 cataaccgataaaggagatttatttgcagaaggctagc 274 ||||||| ||||||| ||||||||||||||||||||| Sbjct: 136693 cataaccaataaaggcaatttatttgcagaaggctagc 136656
>dbj|AK102266.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088N13, full insert sequence Length = 3213 Score = 60.0 bits (30), Expect = 8e-06 Identities = 102/126 (80%) Strand = Plus / Minus Query: 421 atcacatcaactggggatctgaacgagcatagaaatcgttcctggtagagagcaaacaca 480 |||||||||||| | |||| || || ||||||||| | ||||||| ||||||||||| Sbjct: 2838 atcacatcaactcgagatccgattgaacatagaaattgaacctggtatcgagcaaacaca 2779 Query: 481 taatcttttaaagttgcaatgaagtgtggtccctgcagtgagatcttgtggcatcaaaac 540 |||||| || | ||||||||||||| || |||||||| |||| |||| ||||| || Sbjct: 2778 taatctcatataactgcaatgaagtgtagttggtgcagtgatatctggtggtatcaatac 2719 Query: 541 accatc 546 |||||| Sbjct: 2718 accatc 2713 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 237 cataaccgataaaggagatttatttgcagaaggctagc 274 ||||||| ||||||| ||||||||||||||||||||| Sbjct: 3051 cataaccaataaaggcaatttatttgcagaaggctagc 3014
>ref|NM_191936.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 5370 Score = 54.0 bits (27), Expect = 5e-04 Identities = 81/99 (81%) Strand = Plus / Minus Query: 448 catagaaatcgttcctggtagagagcaaacacataatcttttaaagttgcaatgaagtgt 507 ||||||||| | ||||||| ||||||||||||||||| || | ||||||||||||| Sbjct: 5349 catagaaattgaacctggtatcgagcaaacacataatctcatataactgcaatgaagtgt 5290 Query: 508 ggtccctgcagtgagatcttgtggcatcaaaacaccatc 546 || |||||||| |||| |||| ||||| |||||||| Sbjct: 5289 agttggtgcagtgatatctggtggtatcaatacaccatc 5251
>gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold Length = 501879 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 462 ctggtagagagcaaacacataat 484 ||||||||||||||||||||||| Sbjct: 385349 ctggtagagagcaaacacataat 385327
>ref|XM_536788.2| PREDICTED: Canis familiaris similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS), transcript variant 1 (LOC479656), mRNA Length = 3417 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 504 gtgtggtccctgcagtgagatc 525 |||||||||||||||||||||| Sbjct: 719 gtgtggtccctgcagtgagatc 740
>ref|XM_856762.1| PREDICTED: Canis familiaris similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS), transcript variant 3 (LOC479656), mRNA Length = 2933 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 504 gtgtggtccctgcagtgagatc 525 |||||||||||||||||||||| Sbjct: 235 gtgtggtccctgcagtgagatc 256
>ref|XM_588170.2| PREDICTED: Bos taurus similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) (LOC510933), mRNA Length = 3299 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 505 tgtggtccctgcagtgagatc 525 ||||||||||||||||||||| Sbjct: 585 tgtggtccctgcagtgagatc 605
>ref|XM_757370.1| Ustilago maydis 521 hypothetical protein (UM06316.1) partial mRNA Length = 2391 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 agcagaagacttgctaatctt 318 ||||||||||||||||||||| Sbjct: 1987 agcagaagacttgctaatctt 2007
>emb|BX897686.8| Zebrafish DNA sequence from clone DKEY-145M5 in linkage group 15, complete sequence Length = 115533 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 aaaatcctaaactgcagcatc 378 ||||||||||||||||||||| Sbjct: 30929 aaaatcctaaactgcagcatc 30949
>gb|AC160409.6| Mus musculus 10 BAC RP23-184O11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209766 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 ccttgtttaccttgatggctt 41 ||||||||||||||||||||| Sbjct: 116925 ccttgtttaccttgatggctt 116945
>ref|XM_214690.3| PREDICTED: Rattus norvegicus alanyl-tRNA synthetase (predicted) (Aars_predicted), mRNA Length = 3639 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 505 tgtggtccctgcagtgagatc 525 ||||||||||||||||||||| Sbjct: 926 tgtggtccctgcagtgagatc 946
>gb|AC157016.3| Mus musculus 10 BAC RP24-505M19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 168538 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 ccttgtttaccttgatggctt 41 ||||||||||||||||||||| Sbjct: 112294 ccttgtttaccttgatggctt 112314
>emb|AL954372.6| Zebrafish DNA sequence from clone CH211-259G3, complete sequence Length = 162539 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 aaaatcctaaactgcagcatc 378 ||||||||||||||||||||| Sbjct: 6829 aaaatcctaaactgcagcatc 6809
>gb|AC155715.24| Mus musculus 10 BAC RP24-118H2 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 174860 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 296 gaagcagaagacttgctaatcttgt 320 ||||||||||| ||||||||||||| Sbjct: 136177 gaagcagaagagttgctaatcttgt 136153
>ref|XM_416666.1| PREDICTED: Gallus gallus LOC418456 (LOC418456), mRNA Length = 773 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 atttatttgcagaaggctag 273 |||||||||||||||||||| Sbjct: 756 atttatttgcagaaggctag 737
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold Length = 1996640 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 tatgtacagaactggaagtg 342 |||||||||||||||||||| Sbjct: 1634521 tatgtacagaactggaagtg 1634540
>gb|AC116677.11| Mus musculus chromosome 3, clone RP23-111M12, complete sequence Length = 214206 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 474 aaacacataatcttttaaagttgc 497 ||||||| |||||||||||||||| Sbjct: 156926 aaacacacaatcttttaaagttgc 156949
>emb|AL592296.16| Human DNA sequence from clone RP11-792P23 on chromosome 10 Contains a novel pseudogene and the 3' end of a novel gene (MGC46732), complete sequence Length = 77088 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 392 aacacattgtatttttatctgccc 415 |||||| ||||||||||||||||| Sbjct: 66662 aacacaatgtatttttatctgccc 66685
>emb|AL356865.19| Human DNA sequence from clone RP11-36N22 on chromosome 10 Contains a pseudogene similar to part of solute carrier family 25, (mitochondrial carrier), member 18 (SLC25A18), the GPR10 gene for G protein-coupled receptor 10 (GR3, PrRPR), a translocase of outer mitochondrial membrane 22 homolog (yeast) (TOM22) (TOMM22) pseudogene and one CpG island, complete sequence Length = 156604 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 cagaaggctagcatgaagtt 282 |||||||||||||||||||| Sbjct: 101610 cagaaggctagcatgaagtt 101629
>gb|AC026672.44| Homo sapiens 12 BAC RP11-876K22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 230392 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 gagttgtaatacataatacagtga 69 ||||||||| |||||||||||||| Sbjct: 161309 gagttgtaaaacataatacagtga 161332
>gb|AE008899.1| Salmonella typhimurium LT2, section 203 of 220 of the complete genome Length = 24125 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ttaattgagttgtaatacataata 63 ||||||||||||| |||||||||| Sbjct: 682 ttaattgagttgtcatacataata 659
>emb|BX247953.2| Mouse DNA sequence from clone RP23-289L21 on chromosome 4 Contains a novel gene, a novel pseudogene, the Rrm2-ps1 gene for ribonucleotide reductase M2 pseudogene 1 and a heterogeneous nuclear ribonucleoprotein D (Hnrpd) pseudogene, complete sequence Length = 159473 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 396 cattgtatttttatctgcccacat 419 ||||||||||||||||| |||||| Sbjct: 29190 cattgtatttttatctgaccacat 29213
>emb|AL627282.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 18/20 Length = 234050 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ttaattgagttgtaatacataata 63 ||||||||||||| |||||||||| Sbjct: 85120 ttaattgagttgtcatacataata 85097
>emb|AJ576316.1|STY576316 Salmonella typhimurium Salmonella Pathogenicity Island 4 (siiABCDEF genes) Length = 24660 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ttaattgagttgtaatacataata 63 ||||||||||||| |||||||||| Sbjct: 1072 ttaattgagttgtcatacataata 1049
>gb|AF293978.1|AF293978 Macropus giganteus cystic fibrosis transmembrane conductance regulator (CFTR) gene, partial cds Length = 672 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 tatgtacagaactggaagtg 342 |||||||||||||||||||| Sbjct: 555 tatgtacagaactggaagtg 574
>gb|AC158440.3| Macropus eugenii clone ME_KBa-330E9, complete sequence Length = 101335 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 tatgtacagaactggaagtg 342 |||||||||||||||||||| Sbjct: 740 tatgtacagaactggaagtg 759
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 agtgtggtccctgcagtgag 522 |||||||||||||||||||| Sbjct: 28609118 agtgtggtccctgcagtgag 28609099
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ttaattgagttgtaatacataata 63 ||||||||||||| |||||||||| Sbjct: 4232904 ttaattgagttgtcatacataata 4232881
>dbj|AP003770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0550B04 Length = 150131 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 agtgtggtccctgcagtgag 522 |||||||||||||||||||| Sbjct: 100596 agtgtggtccctgcagtgag 100577
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0622F03 Length = 170064 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 agtgtggtccctgcagtgag 522 |||||||||||||||||||| Sbjct: 9684 agtgtggtccctgcagtgag 9665
>gb|AC145042.3| Macropus eugenii clone ME_KBa-289E24, complete sequence Length = 161181 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 tatgtacagaactggaagtg 342 |||||||||||||||||||| Sbjct: 157502 tatgtacagaactggaagtg 157521
>tpe|BN000728.1| TPA: TPA_exp: Canis familiaris col6a3 gene for collagen, type VI, alpha 3 and mlph gene for melanophilin Length = 212696 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 ctggtagagagcaaacacat 481 |||||||||||||||||||| Sbjct: 41323 ctggtagagagcaaacacat 41342
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ttaattgagttgtaatacataata 63 ||||||||||||| |||||||||| Sbjct: 4307770 ttaattgagttgtcatacataata 4307747
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ttaattgagttgtaatacataata 63 ||||||||||||| |||||||||| Sbjct: 4412601 ttaattgagttgtcatacataata 4412578
>emb|BX005081.6| Zebrafish DNA sequence from clone CH211-69M16 in linkage group 7, complete sequence Length = 168607 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 40 ttaattgagttgtaatacataatacagt 67 ||||||||| || ||||||||||||||| Sbjct: 2673 ttaattgaggtgaaatacataatacagt 2646
>gb|AF060869.1|AF060869 Salmonella typhimurium excision nuclease UvrA (uvrA) gene, partial cds; single-strand binding protein (ssb) gene, complete cds; tRNA-Thr gene, complete sequence; pathogenicity island SPI-4 operon, complete sequence; yjcB gene, complete cds; and yjcC gene, partial cds Length = 27290 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ttaattgagttgtaatacataata 63 ||||||||||||| |||||||||| Sbjct: 2251 ttaattgagttgtcatacataata 2228
>emb|AJ920047.1| Canis familiaris melanophilin gene locus, breed Doberman Length = 197532 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 ctggtagagagcaaacacat 481 |||||||||||||||||||| Sbjct: 41373 ctggtagagagcaaacacat 41392 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,304,350 Number of Sequences: 3902068 Number of extensions: 6304350 Number of successful extensions: 111002 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110812 Number of HSP's gapped (non-prelim): 185 length of query: 550 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 527 effective length of database: 17,143,297,704 effective search space: 9034517890008 effective search space used: 9034517890008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
