ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags19n11 |
|---|---|
| Clone Library Name | barley_pub |
>GSTH1_ORYSA (O65857) Probable glutathione S-transferase GSTF1 (EC 2.5.1.18)| (GST-I) Length = 219 Score = 52.0 bits (123), Expect = 3e-07 Identities = 21/27 (77%), Positives = 24/27 (88%) Frame = -3 Query: 376 YPHVKAWWESLMARPAIKKLAAQMVPK 296 YPHVKAWWE LMARP++KKLAA M P+ Sbjct: 191 YPHVKAWWERLMARPSVKKLAAVMAPQ 217
>GSTF1_MAIZE (P12653) Glutathione S-transferase I (EC 2.5.1.18) (GST-I) (GST-29)| (GST class-phi) Length = 213 Score = 44.7 bits (104), Expect = 6e-05 Identities = 17/26 (65%), Positives = 21/26 (80%) Frame = -3 Query: 376 YPHVKAWWESLMARPAIKKLAAQMVP 299 YPHVKAWW LM RP+++K+AA M P Sbjct: 186 YPHVKAWWSGLMERPSVQKVAALMKP 211
>GSTH2_ORYSA (O82451) Probable glutathione S-transferase GSTF2 (EC 2.5.1.18)| (GST-II) Length = 214 Score = 43.1 bits (100), Expect = 2e-04 Identities = 17/26 (65%), Positives = 21/26 (80%) Frame = -3 Query: 376 YPHVKAWWESLMARPAIKKLAAQMVP 299 YPHVKAWW LMARP+ +K+A+ M P Sbjct: 187 YPHVKAWWTDLMARPSSQKVASLMKP 212
>GSTF1_WHEAT (P30110) Glutathione S-transferase 1 (EC 2.5.1.18) (GST class-phi)| Length = 229 Score = 40.0 bits (92), Expect = 0.001 Identities = 15/24 (62%), Positives = 19/24 (79%) Frame = -3 Query: 376 YPHVKAWWESLMARPAIKKLAAQM 305 YP VKAWWE LMARPA++++ M Sbjct: 196 YPKVKAWWEMLMARPAVQRVCKHM 219
>GSTF2_WHEAT (P30111) Glutathione S-transferase 2 (EC 2.5.1.18) (GST class-phi)| Length = 291 Score = 40.0 bits (92), Expect = 0.001 Identities = 15/24 (62%), Positives = 19/24 (79%) Frame = -3 Query: 376 YPHVKAWWESLMARPAIKKLAAQM 305 YP VKAWWE LMARPA++++ M Sbjct: 196 YPKVKAWWEMLMARPAVQRVCKHM 219
>GSTF3_MAIZE (P04907) Glutathione S-transferase III (EC 2.5.1.18) (GST-III) (GST| class-phi) Length = 221 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/32 (56%), Positives = 24/32 (75%), Gaps = 1/32 (3%) Frame = -3 Query: 373 PHVKAWWESLMARPAIKK-LAAQMVPKKP*SA 281 PHVKAWWE++ ARPA +K +AA +P P S+ Sbjct: 189 PHVKAWWEAIAARPAFQKTVAAIPLPPPPSSS 220
>GSTF4_MAIZE (P46420) Glutathione S-transferase IV (EC 2.5.1.18) (GST-IV)| (GST-27) (GST class-phi) Length = 222 Score = 35.4 bits (80), Expect = 0.034 Identities = 14/23 (60%), Positives = 16/23 (69%) Frame = -3 Query: 373 PHVKAWWESLMARPAIKKLAAQM 305 PHV AWW+ L ARPA K+A M Sbjct: 189 PHVSAWWQGLAARPAANKVAQFM 211
>IF2_XANCP (Q8P7U7) Translation initiation factor IF-2| Length = 916 Score = 29.6 bits (65), Expect = 1.9 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 6/74 (8%) Frame = -2 Query: 368 RQGMVGEPHGQAGHQEARRSD---GSQEAVICLGGVSRPR---IRSDLYGVFLLVSRIRQ 207 R + G+P G+ G +RR+D GS ++ G RP +R G + V+ + Q Sbjct: 289 RSNVRGKPTGRPGSSSSRRNDGGRGSNQSNSGPHGFERPTAPVVREVAIGETITVADLAQ 348 Query: 206 *ISLRGWDCTSVQF 165 ++L+G D F Sbjct: 349 KLALKGGDVVKALF 362
>IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2| Length = 902 Score = 29.6 bits (65), Expect = 1.9 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 6/74 (8%) Frame = -2 Query: 368 RQGMVGEPHGQAGHQEARRSD---GSQEAVICLGGVSRPR---IRSDLYGVFLLVSRIRQ 207 R + G+P G+ G +RR+D GS ++ G RP +R G + V+ + Q Sbjct: 275 RSNVRGKPTGRPGSSSSRRNDGGRGSNQSNSGPHGFERPTAPVVREVAIGETITVADLAQ 334 Query: 206 *ISLRGWDCTSVQF 165 ++L+G D F Sbjct: 335 KLALKGGDVVKALF 348
>COQ5_PONPY (Q5RBK6) Ubiquinone biosynthesis methyltransferase COQ5,| mitochondrial precursor (EC 2.1.1.-) Length = 327 Score = 29.6 bits (65), Expect = 1.9 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 7/68 (10%) Frame = -1 Query: 357 GGRASWPGRPSRSSPLRWFPRSRDLLRRGFAS-----EDKI*SVWRFLVGVANK--AMNK 199 G R+SWPG P + R P+ + F S E+K V++ VA K MN Sbjct: 28 GLRSSWPGAPLSA---RLLPQEKRATETHFGSETVSEEEKGGKVYQVFESVAKKYDVMND 84 Query: 198 LARLGLHQ 175 + LG+H+ Sbjct: 85 MMSLGIHR 92
>UPK3B_HUMAN (Q9BT76) Uroplakin-3B precursor (Uroplakin IIIb) (UPIIIb) (p35)| Length = 320 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%) Frame = -1 Query: 375 TRTSRH--GGRASWPGRPSRSSPLRW 304 T+ RH GG +WPG P + PL W Sbjct: 282 TQRGRHTAGGLQAWPGPPPQPQPLAW 307
>GUN4_BACS5 (P28622) Endoglucanase 4 precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase 4) (Cellulase 4) (EG-IV) Length = 636 Score = 28.9 bits (63), Expect = 3.2 Identities = 10/32 (31%), Positives = 18/32 (56%) Frame = -1 Query: 351 RASWPGRPSRSSPLRWFPRSRDLLRRGFASED 256 R+ WP R S+S R++ ++ +GF +D Sbjct: 506 RSGWPARSSQSLSFRYYVNLSEIFAKGFTDKD 537
>FTSH_MYCLE (Q9CD58) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 787 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +1 Query: 274 PPKQITASWEPSERRAS*WPAWP*GSPTMP*RA 372 PP+Q W P E++ S P WP +P+ P +A Sbjct: 712 PPQQPPDYWYPPEQQPSQSPYWPQPAPSYPGQA 744
>MEMB_METCA (P18798) Methane monooxygenase component A beta chain (EC| 1.14.13.25) (Methane hydroxylase) Length = 388 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = -1 Query: 360 HGGRASWPGRPSRSSPLRWFPRSRDLLRRGFAS--EDKI*SVWRF 232 HGGR SW + + WF + RD LRR A +DK WR+ Sbjct: 76 HGGRPSWGNETTELRTVDWF-KHRDPLRRWHAPYVKDKA-EEWRY 118
>BAT4_HUMAN (O95872) Protein BAT4 (HLA-B-associated transcript 4) (G5 protein)| Length = 356 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = +1 Query: 256 ILGRETPPKQITASWEPSERRAS*WPAW 339 + GRE PP+ T SW RR AW Sbjct: 317 VAGRERPPRVATLSWREERRREEKDRAW 344
>YX21_CAEEL (Q11192) Hypothetical protein C04E7.1| Length = 113 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +1 Query: 148 HIGKHKNCTLVQSQPRKLIHCLIRDTNKKTPYRSDLILGRETPP 279 HI + + C L QS RK+I IR ++ +++ R PP Sbjct: 52 HILRLETCLLHQSASRKMIRAEIRQLREQEKCLIEIVADRPPPP 95
>CTPV_MYCTU (P77894) Probable cation-transporting ATPase V (EC 3.6.3.-)| Length = 770 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 8/34 (23%) Frame = -1 Query: 372 RTSRHGGR--------ASWPGRPSRSSPLRWFPR 295 + SR GGR ASWPG +R W PR Sbjct: 107 KASRCGGRPRGPVRGSASWPGEQNRRERRTWLPR 140
>GSTF3_ARATH (P42761) Glutathione S-transferase ERD13 (EC 2.5.1.18) (GST| class-phi) Length = 214 Score = 27.7 bits (60), Expect = 7.0 Identities = 9/21 (42%), Positives = 16/21 (76%) Frame = -3 Query: 370 HVKAWWESLMARPAIKKLAAQ 308 HV AWW+ + +R A K+++A+ Sbjct: 189 HVSAWWDKISSRAAWKEVSAK 209
>SUREJ_STRPU (Q26627) Sperm receptor for egg jelly precursor (suREJ)| Length = 1450 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/78 (24%), Positives = 33/78 (42%) Frame = +2 Query: 116 YCPISRAFHDHTLASTKTARWCNPSRASLFIALFATPTRKRHTDQILSSDAKPLLSRSRL 295 Y P+ DH + R CN + S++I+ P D + + + LL + L Sbjct: 888 YLPVGVGTDDHDILLQVNVRDCNMASTSVYISATVHPPT---LDAVGMNLVQELLDMALL 944 Query: 296 LGNHLSGELLDGRPGHEA 349 + +++ L G PG A Sbjct: 945 VETNVNALLAVGDPGQAA 962
>GCN2_SCHPO (Q9HGN1) Serine/threonine-protein kinase gcn2 (EC 2.7.11.1)| Length = 1576 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = +1 Query: 196 KLIHCLIRDTNKKTPYRSDLILGRETPPK 282 K+IHCL++ K P +L+ PPK Sbjct: 894 KVIHCLLQHDPTKRPSSQELLESEAIPPK 922 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,202,182 Number of Sequences: 219361 Number of extensions: 1061055 Number of successful extensions: 3035 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2981 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3034 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
