ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19n09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY323206.1| Hordeum vulgare SUSIBA2 (susiba2) mRNA, complete cds Length = 2354 Score = 196 bits (99), Expect = 5e-47 Identities = 132/139 (94%), Gaps = 3/139 (2%) Strand = Plus / Plus Query: 108 agatcatgcatcgttgagccgcttggtgggcgagacggcctcgatggcctccccgagcgg 167 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 1 agatcatgcatcgttgagccgcttggtgggcgagacggc-tcgatgggctccccgagcgg 59 Query: 168 ccacgcggcctcgatgaagtactccccgtgcttcaccttctgcgccacggtgatctcctt 227 ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 60 gcacgcgggctcgatgaagtactccccgtgcttca-cttctgcgccacggtgatctcctt 118 Query: 228 -ggtcggctccaagccgaa 245 |||||| ||||||||||| Sbjct: 119 gggtcgggtccaagccgaa 137
>emb|AJ250665.1|HVU250665 Hordeum vulgare partial mRNA for putative DCINA-induced protein, clone BCI-9 Length = 281 Score = 182 bits (92), Expect = 7e-43 Identities = 98/100 (98%) Strand = Plus / Minus Query: 1 atctatgtgccaatattaccaacgatgatcatacaaccattggagatgcccttactgcgc 60 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 100 atctatgtggcaatattaccaacgatgatcatacaatcattggagatgcccttactgcgc 41 Query: 61 gagctagggccggattagcaatcatatcaaccaatactgt 100 |||||||||||||||||||||||||||||||||||||||| Sbjct: 40 gagctagggccggattagcaatcatatcaaccaatactgt 1
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 79.8 bits (40), Expect = 8e-12 Identities = 49/52 (94%) Strand = Plus / Plus Query: 1 atctatgtgccaatattaccaacgatgatcatacaaccattggagatgccct 52 ||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct: 30962 atctatgtggtaattttaccaacgatgatcatacaaccattggagatgccct 31013
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 16 ttaccaacgatgatcatacaaccattggagatgccctta 54 ||||||||||||||||||| ||||||| ||||||||||| Sbjct: 193077 ttaccaacgatgatcatactaccattgaagatgccctta 193039
>gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18, complete sequence Length = 150279 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 442 atgtagtagaagctggaggtgacgtagagctcggcctg 479 ||||||||||||||||| |||||||||| |||| |||| Sbjct: 102757 atgtagtagaagctggatgtgacgtagatctcgtcctg 102720 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 166 ggccacgcggcctcgatgaagtactccccgtgcttcaccttct 208 |||||||| || |||||| ||||||| || ||||||||||||| Sbjct: 123493 ggccacgccgcttcgatgtagtactctccatgcttcaccttct 123451
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 442 atgtagtagaagctggaggtgacgtagagctcggcctg 479 ||||||||||||||||| |||||||||| |||| |||| Sbjct: 1206951 atgtagtagaagctggatgtgacgtagatctcgtcctg 1206914 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 166 ggccacgcggcctcgatgaagtactccccgtgcttcaccttct 208 |||||||| || |||||| ||||||| || ||||||||||||| Sbjct: 1227687 ggccacgccgcttcgatgtagtactctccatgcttcaccttct 1227645
>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence Length = 184425 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 3 ctatgtgccaatattaccaacgatgatcatacaaccattggagatgccct 52 ||||||| ||| ||||||||| | ||| ||||||||||||||||||||| Sbjct: 55102 ctatgtgtcaaaattaccaacaactatcttacaaccattggagatgccct 55053 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 3 ctatgtgccaatattaccaacgatgatcatacaaccattggagatgccct 52 ||||||| ||| ||||||||| | ||| ||||||||||||||||||||| Sbjct: 3095 ctatgtgtcaaaattaccaacaactatcttacaaccattggagatgccct 3144
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 442 atgtagtagaagctggaggtgacgtagagctcggcctg 479 ||||||||||||||||| |||||||||| |||| |||| Sbjct: 1204672 atgtagtagaagctggatgtgacgtagatctcgtcctg 1204635 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 166 ggccacgcggcctcgatgaagtactccccgtgcttcaccttct 208 |||||||| || |||||| ||||||| || ||||||||||||| Sbjct: 1225408 ggccacgccgcttcgatgtagtactctccatgcttcaccttct 1225366
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 16 ttaccaacgatgatcatacaaccattggagatgccct 52 |||||||||||||||||| ||||||| ||||||||| Sbjct: 30001 ttaccaacgatgatcataggaccattgaagatgccct 29965
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 192 cccgtgcttcaccttctgcgccacggt 218 ||||| ||||||||||||||||||||| Sbjct: 1813551 cccgtccttcaccttctgcgccacggt 1813577
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 244 aacccgtccacgagcagggagta 266 ||||||||||||||||||||||| Sbjct: 2443436 aacccgtccacgagcagggagta 2443458
>dbj|AK059453.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-B11, full insert sequence Length = 735 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 166 ggccacgcggcctcgatgaagtactccccgtgcttcaccttct 208 |||||||| || |||||| ||||||| || ||||||||||||| Sbjct: 588 ggccacgccgcttcgatgtagtactctccatgcttcaccttct 546
>emb|AL354815.10| Human DNA sequence from clone RP11-760M1 on chromosome 13 Contains three novel genes, the 5' end of the TNFRSF19 gene for tumour necrosis factor receptor superfamily member 19 and two CpG islands, complete sequence Length = 168663 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 328 gccttggcctccaggaagctca 349 |||||||||||||||||||||| Sbjct: 53221 gccttggcctccaggaagctca 53200
>gb|U82749.1|MAU82749 Mycobacterium avium glyceraldehyde-3-phosphate dehydrogenase homolog (gapdh) gene, complete cds; and phosphoglycerate kinase gene, partial cds Length = 2530 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 362 cctcggcggcggccctgaacgccgc 386 |||||||||||||| |||||||||| Sbjct: 1158 cctcggcggcggccttgaacgccgc 1134
>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like putative defense response protein, and putative alliin lyase genes, complete cds; and unknown genes Length = 106618 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 tacaaccattggagatgccct 52 ||||||||||||||||||||| Sbjct: 89925 tacaaccattggagatgccct 89945
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 atctcctcggcggcggccctg 378 ||||||||||||||||||||| Sbjct: 5509779 atctcctcggcggcggccctg 5509759
>gb|AY111776.1| Zea mays CL39796_1 mRNA sequence Length = 952 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 265 tactggtagacaaggtccatgcagatgtagggc 297 ||||||||| ||||||||||||| | ||||||| Sbjct: 549 tactggtaggcaaggtccatgcacaggtagggc 581
>ref|NM_112195.2| Arabidopsis thaliana ATP binding / aspartate-tRNA ligase/ lysine-tRNA ligase/ nucleic acid binding / tRNA ligase AT3G13490 mRNA, complete cds Length = 2091 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ggattagcaatcatatcaac 91 |||||||||||||||||||| Sbjct: 760 ggattagcaatcatatcaac 741
>ref|NM_001030604.1| Gallus gallus SLIT-ROBO Rho GTPase activating protein 3 (SRGAP3), mRNA Length = 2858 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 ccgctgctcgcctcgctgtc 419 |||||||||||||||||||| Sbjct: 2585 ccgctgctcgcctcgctgtc 2566
>gb|AY737718.1| Escherichia blattae dihydroxyacetone kinase (dhaK), putative phosphoenolpyruvate-protein kinase (PTS system) (dhaN), putative dihydroxyacetone kinase (dhaM), hypothetical protein ycgT (dhaL), glycerol dehydrogenase (dhaD), glycerol metabolism operon regulatory protein (dhaR), putative adenosyl transferase subunit (dhaH), putative glycerol dehydratase reactivation factor small subunit (dhaG), 1,3-propanediol dehydrogenase (dhaT), putative adenosyl transferase subunit (dhaI), glycerol dehydratase large subunit (dhaB), glycerol dehydratase 21 kDa subunit, transcriptional regulator, Ner-like DNA-binding protein, transposase, DNA transposition protein, Cim protein, host nuclease inhibitor protein, hypothetical proteins, middle operon regulator, hypothetical proteins, Portal protein, hypothetical protein, F protein, I protein, major head subunit, hypothetical proteins, virion morphogenesis protein, hypothetical proteins, tail sheath protein, Tail tube protein, hypothetical proteins, DNA circulation protein, tail protein, baseplate assembly protein, hypothetical proteins, tail fiber protein, tail fiber assembly protein, hypothetical protein, glycerol dehydratase beta subunit, glycerol dehydratase small subunit (dhaE), and glycerol dehydratase reactivase chain A (dhaF) genes, complete cds Length = 49478 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 150 gatggcctccccgagcggccacgcggcc 177 ||||||||||| ||||||||||| |||| Sbjct: 48611 gatggcctccctgagcggccacggggcc 48638
>gb|AY039937.1| Arabidopsis thaliana At3g13490 mRNA sequence Length = 2096 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ggattagcaatcatatcaac 91 |||||||||||||||||||| Sbjct: 760 ggattagcaatcatatcaac 741
>emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genome; segment 13/16 Length = 349746 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 gccctgaacgccgccggcgt 392 |||||||||||||||||||| Sbjct: 41411 gccctgaacgccgccggcgt 41392
>gb|DQ372923.1| Bacteriophage mu1/6, complete genome Length = 38194 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gagcggccacgcggcctcga 181 |||||||||||||||||||| Sbjct: 10731 gagcggccacgcggcctcga 10712
>emb|AJ719759.1| Gallus gallus mRNA for hypothetical protein, clone 6c21 Length = 2858 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 ccgctgctcgcctcgctgtc 419 |||||||||||||||||||| Sbjct: 2585 ccgctgctcgcctcgctgtc 2566
>emb|AJ239004.1|SPN239004 Streptococcus pneumoniae type 8 capsular gene cluster Length = 14730 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ggattagcaatcatatcaac 91 |||||||||||||||||||| Sbjct: 8942 ggattagcaatcatatcaac 8961
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 gtagagctcggcctggccgg 484 |||||||||||||||||||| Sbjct: 75359 gtagagctcggcctggccgg 75378
>gb|AF316641.1|AF316641 Streptococcus pneumoniae serotype 8 capsular polysaccharide gene cluster, complete sequence Length = 13746 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ggattagcaatcatatcaac 91 |||||||||||||||||||| Sbjct: 8314 ggattagcaatcatatcaac 8333
>emb|BX830965.1|CNS09ZII Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS42ZF03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1334 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 actccccgtgcttcaccttc 207 |||||||||||||||||||| Sbjct: 707 actccccgtgcttcaccttc 726
>gb|AF271693.1|AF271693 Mycobacteriophage Bxb1, complete sequence Length = 50550 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 349 atcgggcagatctcctcggcggcggccc 376 |||| |||||||||||||||||| |||| Sbjct: 24775 atcgagcagatctcctcggcggctgccc 24802
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 cgtggtcttcccgctgctcg 409 |||||||||||||||||||| Sbjct: 2260783 cgtggtcttcccgctgctcg 2260764
>gb|BT002317.1| Arabidopsis thaliana clone C105095 putative lysyl-tRNA synthetase (At3g13490) mRNA, complete cds Length = 1840 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ggattagcaatcatatcaac 91 |||||||||||||||||||| Sbjct: 737 ggattagcaatcatatcaac 718
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 cgctgtcgatcaggccgacg 432 |||||||||||||||||||| Sbjct: 3237155 cgctgtcgatcaggccgacg 3237174
>dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRP15 Length = 83287 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ggattagcaatcatatcaac 91 |||||||||||||||||||| Sbjct: 52091 ggattagcaatcatatcaac 52110
>dbj|AP001310.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MUO22 Length = 15145 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 aaccattggagatgccctta 54 |||||||||||||||||||| Sbjct: 13816 aaccattggagatgccctta 13797
>emb|CR931644.1| Streptococcus pneumoniae strain 573/62 (serotype 8) Length = 13844 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ggattagcaatcatatcaac 91 |||||||||||||||||||| Sbjct: 8321 ggattagcaatcatatcaac 8340
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 153 ggcctccccgagcggccacgcggcctcgatga 184 |||||| |||||| ||||||||||||||||| Sbjct: 585478 ggcctcgccgagcccccacgcggcctcgatga 585509
>dbj|AP006081.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT32P24, TM0120, complete sequence Length = 137804 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 atacaaccattggagatgccctta 54 ||||||||||||||||||| |||| Sbjct: 42615 atacaaccattggagatgctctta 42638
>gb|AY500153.1| Mycobacteriophage Bethlehem, complete genome Length = 52250 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 349 atcgggcagatctcctcggcggcggccc 376 |||| |||||||||||||||||| |||| Sbjct: 25967 atcgagcagatctcctcggcggctgccc 25994
>gb|AY500152.1| Mycobacteriophage U2, complete genome Length = 51277 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 349 atcgggcagatctcctcggcggcggccc 376 |||| |||||||||||||||||| |||| Sbjct: 24829 atcgagcagatctcctcggcggctgccc 24856 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,122,176 Number of Sequences: 3902068 Number of extensions: 3122176 Number of successful extensions: 59334 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58612 Number of HSP's gapped (non-prelim): 719 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
