ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19n06 |
|---|---|
| Clone Library Name | barley_pub |
>KASM_ARATH (Q8L3X9) 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial| precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase) (mtKAS) Length = 461 Score = 35.0 bits (79), Expect = 0.048 Identities = 15/17 (88%), Positives = 17/17 (100%) Frame = -2 Query: 296 VSNSFGFGGTNASLLFS 246 +SNSFGFGGTNASLLF+ Sbjct: 443 MSNSFGFGGTNASLLFA 459
>FABB_HAEIN (P43710) 3-oxoacyl-[acyl-carrier-protein] synthase 1 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase I) (Beta-ketoacyl-ACP synthase I) (KAS I) Length = 406 Score = 33.5 bits (75), Expect = 0.14 Identities = 13/19 (68%), Positives = 18/19 (94%) Frame = -2 Query: 305 EKLVSNSFGFGGTNASLLF 249 + ++SNSFGFGGTNA+L+F Sbjct: 383 QTVMSNSFGFGGTNATLIF 401
>FABF_RHIME (P56902) 3-oxoacyl-[acyl-carrier-protein] synthase 2 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase II) (Beta-ketoacyl-ACP synthase II) (KAS II) Length = 421 Score = 31.6 bits (70), Expect = 0.53 Identities = 13/15 (86%), Positives = 15/15 (100%) Frame = -2 Query: 296 VSNSFGFGGTNASLL 252 +SNSFGFGGTNASL+ Sbjct: 400 LSNSFGFGGTNASLI 414
>FABF_VIBHA (P55338) 3-oxoacyl-[acyl-carrier-protein] synthase 2 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase II) (Beta-ketoacyl-ACP synthase II) (KAS II) Length = 414 Score = 31.6 bits (70), Expect = 0.53 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = -2 Query: 305 EKLVSNSFGFGGTNASLLF 249 E + NSFGFGGTN SL+F Sbjct: 391 EYAICNSFGFGGTNGSLVF 409
>FABF_SHIFL (P0AAI8) 3-oxoacyl-[acyl-carrier-protein] synthase 2 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase II) (Beta-ketoacyl-ACP synthase II) (KAS II) Length = 412 Score = 31.2 bits (69), Expect = 0.69 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = -2 Query: 305 EKLVSNSFGFGGTNASLLF 249 E + NSFGFGGTN SL+F Sbjct: 391 EYTLCNSFGFGGTNGSLIF 409
>FABF_ECOLI (P0AAI5) 3-oxoacyl-[acyl-carrier-protein] synthase 2 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase II) (Beta-ketoacyl-ACP synthase II) (KAS II) Length = 412 Score = 31.2 bits (69), Expect = 0.69 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = -2 Query: 305 EKLVSNSFGFGGTNASLLF 249 E + NSFGFGGTN SL+F Sbjct: 391 EYTLCNSFGFGGTNGSLIF 409
>FABF_ECOL6 (P0AAI6) 3-oxoacyl-[acyl-carrier-protein] synthase 2 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase II) (Beta-ketoacyl-ACP synthase II) (KAS II) Length = 412 Score = 31.2 bits (69), Expect = 0.69 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = -2 Query: 305 EKLVSNSFGFGGTNASLLF 249 E + NSFGFGGTN SL+F Sbjct: 391 EYTLCNSFGFGGTNGSLIF 409
>FABF_ECO57 (P0AAI7) 3-oxoacyl-[acyl-carrier-protein] synthase 2 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase II) (Beta-ketoacyl-ACP synthase II) (KAS II) Length = 412 Score = 31.2 bits (69), Expect = 0.69 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = -2 Query: 305 EKLVSNSFGFGGTNASLLF 249 E + NSFGFGGTN SL+F Sbjct: 391 EYTLCNSFGFGGTNGSLIF 409
>FABF_VIBCH (Q9KQH9) 3-oxoacyl-[acyl-carrier-protein] synthase 2 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase II) (Beta-ketoacyl-ACP synthase II) (KAS II) Length = 413 Score = 31.2 bits (69), Expect = 0.69 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = -2 Query: 305 EKLVSNSFGFGGTNASLLF 249 E + NSFGFGGTN SL+F Sbjct: 392 EYAMCNSFGFGGTNGSLIF 410
>FABB_BUCBP (Q89AY4) 3-oxoacyl-[acyl-carrier-protein] synthase 1 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase I) (Beta-ketoacyl-ACP synthase I) (KAS I) Length = 407 Score = 30.8 bits (68), Expect = 0.91 Identities = 12/16 (75%), Positives = 15/16 (93%) Frame = -2 Query: 299 LVSNSFGFGGTNASLL 252 ++SNSFGFGGTN SL+ Sbjct: 387 IMSNSFGFGGTNVSLI 402
>FABB_ECOLI (P0A953) 3-oxoacyl-[acyl-carrier-protein] synthase 1 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase I) (Beta-ketoacyl-ACP synthase I) (KAS I) Length = 406 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/16 (75%), Positives = 16/16 (100%) Frame = -2 Query: 299 LVSNSFGFGGTNASLL 252 ++SNSFGFGGTNA+L+ Sbjct: 385 VMSNSFGFGGTNATLV 400
>FABB_ECOL6 (P0A954) 3-oxoacyl-[acyl-carrier-protein] synthase 1 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase I) (Beta-ketoacyl-ACP synthase I) (KAS I) Length = 406 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/16 (75%), Positives = 16/16 (100%) Frame = -2 Query: 299 LVSNSFGFGGTNASLL 252 ++SNSFGFGGTNA+L+ Sbjct: 385 VMSNSFGFGGTNATLV 400
>FAB2_MYCLE (O69473) 3-oxoacyl-[acyl-carrier-protein] synthase 2 (EC 2.3.1.41)| (Beta-ketoacyl-ACP synthase 2) (KAS 2) Length = 420 Score = 30.0 bits (66), Expect = 1.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -2 Query: 296 VSNSFGFGGTNASLLFSC 243 V+NSFGFGG N ++ F C Sbjct: 402 VNNSFGFGGHNVAIAFGC 419
>FABB_BUCAP (Q8KA28) 3-oxoacyl-[acyl-carrier-protein] synthase 1 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase I) (Beta-ketoacyl-ACP synthase I) (KAS I) Length = 407 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/15 (80%), Positives = 14/15 (93%) Frame = -2 Query: 296 VSNSFGFGGTNASLL 252 +SNSFGFGGTN SL+ Sbjct: 389 LSNSFGFGGTNVSLI 403
>FABB_BUCAI (P57193) 3-oxoacyl-[acyl-carrier-protein] synthase 1 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase I) (Beta-ketoacyl-ACP synthase I) (KAS I) Length = 406 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/15 (80%), Positives = 14/15 (93%) Frame = -2 Query: 296 VSNSFGFGGTNASLL 252 +SNSFGFGGTN SL+ Sbjct: 388 MSNSFGFGGTNVSLI 402
>CEM1_YEAST (P39525) 3-oxoacyl-[acyl-carrier-protein] synthase homolog (EC| 2.3.1.41) (Beta-ketoacyl-ACP synthase homolog) Length = 442 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/14 (85%), Positives = 12/14 (85%) Frame = -2 Query: 290 NSFGFGGTNASLLF 249 NSFGFGG N SLLF Sbjct: 423 NSFGFGGVNTSLLF 436
>FBX34_HUMAN (Q9NWN3) F-box only protein 34| Length = 711 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +3 Query: 174 LVCLFESKGLKRERERDVGSLGRAREQQRRVG 269 +V ES+ LKR+ +R+ GSL R +R VG Sbjct: 282 MVAKLESECLKRQGQREPGSLSRNNSFRRNVG 313
>OXSM_MOUSE (Q9D404) 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial| precursor (EC 2.3.1.41) (Beta-ketoacyl synthase) Length = 459 Score = 28.5 bits (62), Expect = 4.5 Identities = 11/14 (78%), Positives = 14/14 (100%) Frame = -2 Query: 296 VSNSFGFGGTNASL 255 ++NSFGFGGTNA+L Sbjct: 441 LTNSFGFGGTNATL 454
>OXSM_HUMAN (Q9NWU1) 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial| precursor (EC 2.3.1.41) (Beta-ketoacyl synthase) Length = 459 Score = 28.5 bits (62), Expect = 4.5 Identities = 11/14 (78%), Positives = 14/14 (100%) Frame = -2 Query: 296 VSNSFGFGGTNASL 255 ++NSFGFGGTNA+L Sbjct: 441 LTNSFGFGGTNATL 454
>ZN759_MOUSE (Q80VM4) Zinc finger protein 579| Length = 562 Score = 28.5 bits (62), Expect = 4.5 Identities = 17/38 (44%), Positives = 19/38 (50%) Frame = -2 Query: 152 RELKRGRHHPR*AGFGGFRHRPLCCAPLSPEDCLTCGR 39 R+ RGR R G G R R AP +P C TCGR Sbjct: 16 RDRGRGRGRGRGRGRGRGRGRGGAGAPRAPLPCPTCGR 53
>OMPA_RICCN (Q52657) Outer membrane protein A precursor (190 kDa antigen) (Cell| surface antigen) (rOmpA) (rOmp A) Length = 2021 Score = 28.1 bits (61), Expect = 5.9 Identities = 11/25 (44%), Positives = 19/25 (76%) Frame = -3 Query: 166 RVFLSVNLNGEGTIRVEQDSAVSGT 92 ++ L+ N+NG G I V+ D+A++GT Sbjct: 187 KITLAGNINGGGIITVKTDAAINGT 211
>POLG_RTSVT (Q91PP5) Genome polyprotein [Contains: Putative leader protein;| Coat protein 1 (25 kDa protein) (CP-1); Coat protein 2 (26 kDa protein) (CP-2); Coat protein 3 (35 kDa protein) (CP-3); Putative helicase (EC 3.6.1.-) (Putative NTP-binding protei Length = 3471 Score = 27.7 bits (60), Expect = 7.7 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 3/63 (4%) Frame = -3 Query: 253 CSRARPSDPTSRSLSLFNPFDSKRHTRMLRVFLSVNLNGEGTIRV---EQDSAVSGTDHC 83 C A D L PFD K M RVF+ + LN G ++ E+ AV C Sbjct: 280 CRDANGVDRGEHKFYLHGPFDLKMTHAMFRVFM-ILLNCHGYVQSEFREEHPAVKDRSLC 338 Query: 82 AVL 74 A+L Sbjct: 339 ALL 341
>LNKS_ASPTE (Q9Y8A5) Lovastatin nonaketide synthase (EC 2.3.1.161) (EC 2.1.1.-)| (LNKS) Length = 3038 Score = 27.7 bits (60), Expect = 7.7 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 17/44 (38%) Frame = -2 Query: 290 NSFGFGGTNASLLF-----------------SCPP*RSNITLPL 210 NSFGFGGTNA + CPP ++LPL Sbjct: 432 NSFGFGGTNAHAIIEEYMEPEQNQLRVSNNEDCPPMTGVLSLPL 475
>PEL6_ARATH (O64510) Probable pectate lyase 6 precursor (EC 4.2.2.2)| Length = 455 Score = 27.7 bits (60), Expect = 7.7 Identities = 18/57 (31%), Positives = 28/57 (49%) Frame = +3 Query: 99 ETAESCSTRMVPSPFKFTDRKTLNILVCLFESKGLKRERERDVGSLGRAREQQRRVG 269 ET ES P+P TD + + + E+ G+ E RD+ +GR ++ RR G Sbjct: 44 ETLESYD----PNPENVTDHFNYHAALAM-ETTGIVNETRRDLRQVGRGKKTTRRGG 95
>KASC1_ARATH (P52410) 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplast| precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase I) (KAS I) Length = 473 Score = 27.7 bits (60), Expect = 7.7 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = -2 Query: 296 VSNSFGFGGTNASLLFS 246 +SNSFGFGG N+ + FS Sbjct: 453 ISNSFGFGGHNSVVAFS 469 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,053,916 Number of Sequences: 219361 Number of extensions: 879100 Number of successful extensions: 2792 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2717 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2787 length of database: 80,573,946 effective HSP length: 77 effective length of database: 63,683,149 effective search space used: 1528395576 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
