ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19n04 |
|---|---|
| Clone Library Name | barley_pub |
>SNF8_XENTR (Q5RJU0) Vacuolar sorting protein SNF8| Length = 257 Score = 107 bits (266), Expect = 3e-23 Identities = 53/102 (51%), Positives = 69/102 (67%) Frame = -1 Query: 592 LSSDDCLRAISKLKVLGSGFEVFSVGKKKLVRSVPTELNKDHNGILELAQAKGYVTVEQV 413 +S DD +RAI KLKVLG+GF + VG LV+SVP ELN DH +L+LA+ KG+VTV ++ Sbjct: 139 VSQDDIIRAIKKLKVLGNGFGIIPVGGSYLVQSVPAELNMDHTVVLQLAEKKGFVTVNEI 198 Query: 412 EKEFSWSTGRAIDALETLLKEGLAMIDDGHRDGKRRYWFPCV 287 + +W T RA LE LLKEGLA I D G+ +YW P + Sbjct: 199 KSSLNWETERAKHVLEHLLKEGLAWI-DSQAQGEAQYWLPAL 239
>SNF8_RAT (Q5RK19) Vacuolar sorting protein SNF8 (ELL-associated protein of| 30 kDa) Length = 258 Score = 103 bits (257), Expect = 4e-22 Identities = 55/117 (47%), Positives = 71/117 (60%), Gaps = 3/117 (2%) Frame = -1 Query: 592 LSSDDCLRAISKLKVLGSGFEVFSVGKKKLVRSVPTELNKDHNGILELAQAKGYVTVEQV 413 +S DD +RAI KLK LG+GF + VG L++SVP ELN DH +L+LA+ GYVTV ++ Sbjct: 139 VSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEI 198 Query: 412 EKEFSWSTGRAIDALETLLKEGLAMIDDGHRDGKRRYWFPCV---TLSSDASVSEAK 251 + W T RA LE LLKEGLA + D G+ YW P + S + S EAK Sbjct: 199 KASLKWETERARQVLEHLLKEGLAWL-DLQAPGEAHYWLPALFTDLYSQEISAEEAK 254
>SNF8_MOUSE (Q9CZ28) Vacuolar sorting protein SNF8| Length = 258 Score = 103 bits (257), Expect = 4e-22 Identities = 55/117 (47%), Positives = 71/117 (60%), Gaps = 3/117 (2%) Frame = -1 Query: 592 LSSDDCLRAISKLKVLGSGFEVFSVGKKKLVRSVPTELNKDHNGILELAQAKGYVTVEQV 413 +S DD +RAI KLK LG+GF + VG L++SVP ELN DH +L+LA+ GYVTV ++ Sbjct: 139 VSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEI 198 Query: 412 EKEFSWSTGRAIDALETLLKEGLAMIDDGHRDGKRRYWFPCV---TLSSDASVSEAK 251 + W T RA LE LLKEGLA + D G+ YW P + S + S EAK Sbjct: 199 KTSLKWETERARQVLEHLLKEGLAWL-DLQAPGEAHYWLPALFTDLYSQEISAEEAK 254
>SNF8_BRARE (Q5U3V9) Vacuolar sorting protein SNF8| Length = 258 Score = 102 bits (254), Expect = 8e-22 Identities = 54/116 (46%), Positives = 72/116 (62%), Gaps = 3/116 (2%) Frame = -1 Query: 592 LSSDDCLRAISKLKVLGSGFEVFSVGKKKLVRSVPTELNKDHNGILELAQAKGYVTVEQV 413 +S DD +RAI KLK +G+GF + VG LV+SVP ELN DH +L+LA+ KGYVTV ++ Sbjct: 139 VSQDDLVRAIKKLKAMGNGFGMIPVGGTYLVQSVPAELNMDHTVVLQLAEKKGYVTVSEI 198 Query: 412 EKEFSWSTGRAIDALETLLKEGLAMIDDGHRDGKRRYWFPCV---TLSSDASVSEA 254 + W RA L+ LLKEGLA + D G+ +YW P + LS D + EA Sbjct: 199 RESLKWEKERACHVLDHLLKEGLAWL-DSQAAGEPQYWLPALFSELLSQDVTPEEA 253
>SNF8_HUMAN (Q96H20) Vacuolar sorting protein SNF8 (ELL-associated protein of| 30 kDa) Length = 258 Score = 101 bits (251), Expect = 2e-21 Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 3/117 (2%) Frame = -1 Query: 592 LSSDDCLRAISKLKVLGSGFEVFSVGKKKLVRSVPTELNKDHNGILELAQAKGYVTVEQV 413 +S DD +RAI KLK LG+GF + VG L++SVP ELN DH +L+LA+ GYVTV ++ Sbjct: 139 VSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEI 198 Query: 412 EKEFSWSTGRAIDALETLLKEGLAMIDDGHRDGKRRYWFPCV---TLSSDASVSEAK 251 + W T RA LE LLKEGLA + D G+ YW P + S + + EA+ Sbjct: 199 KASLKWETERARQVLEHLLKEGLAWL-DLQAPGEAHYWLPALFTDLYSQEITAEEAR 254
>SNF8_YEAST (Q12483) Vacuolar sorting protein SNF8 (Vacuolar protein| sorting-associated protein VPS22) Length = 233 Score = 59.3 bits (142), Expect = 8e-09 Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 1/98 (1%) Frame = -1 Query: 583 DDCLRAISKLKVLGSGFEVFSVGKKKLVRSVPTELNKDHNGILELAQAKGYVTVEQVEKE 404 DD ++I LK L FE+F + KK +RSVP EL D ILE+ GY ++ ++ Sbjct: 132 DDLEKSIDMLKSLEC-FEIFQIRGKKFLRSVPNELTSDQTKILEICSILGYSSISLLKAN 190 Query: 403 FSWSTGRAIDALETLLKEGLAMIDDGHRDG-KRRYWFP 293 W R+ AL+ ++ GL ID ++ G + YW P Sbjct: 191 LGWEAVRSKSALDEMVANGLLWID--YQGGAEALYWDP 226
>GLPR_SHIFL (P0ACL1) Glycerol-3-phosphate regulon repressor| Length = 252 Score = 33.5 bits (75), Expect = 0.48 Identities = 17/48 (35%), Positives = 27/48 (56%) Frame = -1 Query: 469 HNGILELAQAKGYVTVEQVEKEFSWSTGRAIDALETLLKEGLAMIDDG 326 HNGI+EL + +GYV+ E++ + FS S L L ++ L + G Sbjct: 7 HNGIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNELAEQNLILRHHG 54
>GLPR_ECOLI (P0ACL0) Glycerol-3-phosphate regulon repressor| Length = 252 Score = 33.5 bits (75), Expect = 0.48 Identities = 17/48 (35%), Positives = 27/48 (56%) Frame = -1 Query: 469 HNGILELAQAKGYVTVEQVEKEFSWSTGRAIDALETLLKEGLAMIDDG 326 HNGI+EL + +GYV+ E++ + FS S L L ++ L + G Sbjct: 7 HNGIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNELAEQNLILRHHG 54
>Y1266_METJA (Q58662) Hypothetical protein MJ1266 precursor| Length = 417 Score = 32.7 bits (73), Expect = 0.82 Identities = 22/81 (27%), Positives = 39/81 (48%) Frame = -1 Query: 514 KKKLVRSVPTELNKDHNGILELAQAKGYVTVEQVEKEFSWSTGRAIDALETLLKEGLAMI 335 KK + R VPT+ N N I ++A+ G V + ++ +W G +E L G+ +I Sbjct: 151 KKYVFRFVPTD-NFQGNAIGDVAKQLGLKNVIVIYRKDAWGDGLERATVEKLKANGINII 209 Query: 334 DDGHRDGKRRYWFPCVTLSSD 272 D+ D W P + +++ Sbjct: 210 DEIPYDPNIGDWSPIIQTTTN 230
>CLS1_STAES (Q8CPD8) Cardiolipin synthetase 1 (EC 2.7.8.-) (Cardiolipin| synthase 1) (CL synthase 1) Length = 490 Score = 30.0 bits (66), Expect = 5.3 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = -1 Query: 487 TELNKDHNGILE-LAQAKGYVTVEQVEKEFSWSTGRAIDALETLLKEGL 344 T+ +K + +LE + A+ Y+ +E E R +DALET LKEGL Sbjct: 133 TDGHKLYEKVLEDIYNAQDYIHLEYYTFELDGLGKRILDALETKLKEGL 181
>CLS1_STAEQ (Q5HPM5) Cardiolipin synthetase 1 (EC 2.7.8.-) (Cardiolipin| synthase 1) (CL synthase 1) Length = 490 Score = 30.0 bits (66), Expect = 5.3 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = -1 Query: 487 TELNKDHNGILE-LAQAKGYVTVEQVEKEFSWSTGRAIDALETLLKEGL 344 T+ +K + +LE + A+ Y+ +E E R +DALET LKEGL Sbjct: 133 TDGHKLYEKVLEDIYNAQDYIHLEYYTFELDGLGKRILDALETKLKEGL 181
>PA25_PSEAU (P20252) Phospholipase A2 isozyme PA-5 (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) Length = 118 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/51 (27%), Positives = 20/51 (39%) Frame = -3 Query: 344 CYDRRRTQGWQA*ILVPVCHPQLRCLRF*SKVMMYLYCCIFFSPCLHESWN 192 CY + W VP+C+P+ C F C +P E+WN Sbjct: 60 CYPKLTLYSWDCTGNVPICNPKTECKDFTCACDAEAAKCFAKAPYKKENWN 110
>RBP17_MOUSE (Q99NF8) Ran-binding protein 17| Length = 1088 Score = 29.6 bits (65), Expect = 6.9 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = +3 Query: 171 TAPVAQVVPALMKTRGKE-NTTVQVHHDFASETEASELRVTHGNQYLRLPSLCPSSI 338 T P+ +++ LM+ R + N V + EAS++ T+GNQ L L SL I Sbjct: 766 TTPILKLLAELMQNRSQRLNFDVSSPNGILLFREASKMICTYGNQILSLGSLSKDKI 822
>RBP17_HUMAN (Q9H2T7) Ran-binding protein 17| Length = 1088 Score = 29.6 bits (65), Expect = 6.9 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = +3 Query: 171 TAPVAQVVPALMKTRGKE-NTTVQVHHDFASETEASELRVTHGNQYLRLPSLCPSSI 338 T P+ +++ LM+ R + N V + EAS++ T+GNQ L L SL I Sbjct: 766 TTPILKLMAELMQNRSQRLNFDVSSPNGILLFREASKMVCTYGNQILSLGSLSKDQI 822
>FA61B_HUMAN (Q9BX40) Protein FAM61B| Length = 385 Score = 29.3 bits (64), Expect = 9.1 Identities = 19/81 (23%), Positives = 35/81 (43%) Frame = -1 Query: 547 LGSGFEVFSVGKKKLVRSVPTELNKDHNGILELAQAKGYVTVEQVEKEFSWSTGRAIDAL 368 LG+GF VGK +V + D+ +L KG + ++ S+ A D + Sbjct: 142 LGAGFPSIPVGKSPMVEQAVQTGSADNLNAKKLLPGKGTTGTQLNGRQAQPSSKTASDVV 201 Query: 367 ETLLKEGLAMIDDGHRDGKRR 305 + + ++D +R +RR Sbjct: 202 QPAAVQAQGQVNDENRRPQRR 222
>SP6D_BACSU (P37963) Stage VI sporulation protein D| Length = 575 Score = 29.3 bits (64), Expect = 9.1 Identities = 21/70 (30%), Positives = 31/70 (44%) Frame = +3 Query: 219 KENTTVQVHHDFASETEASELRVTHGNQYLRLPSLCPSSIIASPSFSKVSRASIARPVDH 398 KE TTV +H++A EA +Q P+LC + VS A+++ Sbjct: 322 KEETTVSPNHEYALRQEAQNEEAAQSDQ--ADPALCQEEAEPDEALESVSEAALS----I 375 Query: 399 ENSFSTCSTV 428 E+S T S V Sbjct: 376 EDSRETASAV 385
>EFG_MYCGE (P47335) Elongation factor G (EF-G)| Length = 688 Score = 29.3 bits (64), Expect = 9.1 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 15/100 (15%) Frame = -1 Query: 565 ISKLKVLGSGFE--VFSVGKKKLVRSVPTEL----NKDHNGILELAQAKGYV-----TVE 419 ++K+ G+ FE V S+ ++ V++VP + D NGI+++ K Y Sbjct: 134 VNKMDKTGANFERSVLSIQQRLGVKAVPIQFPIGAENDFNGIIDIITKKAYFFDGNKEEN 193 Query: 418 QVEKEFSWSTGRAIDALETLLKEGLAMIDD----GHRDGK 311 +EK ++ L L E +A +DD + DGK Sbjct: 194 AIEKPIPEQYVDQVEKLYNNLVEEVASLDDQLMADYLDGK 233 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,875,014 Number of Sequences: 219361 Number of extensions: 1577090 Number of successful extensions: 4584 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4361 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4584 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
