ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19m24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ISOA_PSEUM (P26501) Isoamylase precursor (EC 3.2.1.68) 34 0.26
2ISOA_PSEAY (P10342) Isoamylase precursor (EC 3.2.1.68) 34 0.26
3EEA1_MOUSE (Q8BL66) Early endosome antigen 1 31 1.7
4Y1342_ARATH (Q9C810) PHD finger protein At1g33420 31 2.2
5EUTT_ECOLI (P65643) Ethanolamine utilization cobalamin adenosylt... 29 8.5
6EUTT_ECOL6 (P65644) Ethanolamine utilization cobalamin adenosylt... 29 8.5
7CX022_HUMAN (Q6ZTR5) Protein CXorf22 29 8.5

>ISOA_PSEUM (P26501) Isoamylase precursor (EC 3.2.1.68)|
          Length = 776

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 442 NTPEL-TKGDLYICFNASEEPASATLPAPAEGSVWLRLVDT 323
           N P L     +Y+ +N      + TLPAP  G+ W R+ DT
Sbjct: 697 NGPSLGDSNSIYVAYNGWSSSVTFTLPAPPSGTQWYRVTDT 737



to top

>ISOA_PSEAY (P10342) Isoamylase precursor (EC 3.2.1.68)|
          Length = 776

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 442 NTPEL-TKGDLYICFNASEEPASATLPAPAEGSVWLRLVDT 323
           N P L     +Y+ +N      + TLPAP  G+ W R+ DT
Sbjct: 697 NGPSLGDSNSIYVAYNGWSSSVTFTLPAPPSGTQWYRVTDT 737



to top

>EEA1_MOUSE (Q8BL66) Early endosome antigen 1|
          Length = 1411

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 130  ISTKALKAESRRQQTYCFIRETGEDPSSIQIKHNCAL 240
            + TKAL+ + +   T   ++E G +  S+QIKH  AL
Sbjct: 1309 LQTKALELQRKLDNTTAAVQELGRENQSLQIKHTQAL 1345



to top

>Y1342_ARATH (Q9C810) PHD finger protein At1g33420|
          Length = 697

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
 Frame = -2

Query: 493 DPTSKFL-CMHIIAENDGNTPELTKGDLYICFNASEE------PASATLPAPAEGSVWLR 335
           D  +K L C H I +   +T      +L+ C   S+E      P    L  P   +V   
Sbjct: 475 DAATKILDCKHFIKDYLSSTVNPVAINLWCCVELSDELKESPAPPPERLVLPLNATVSDL 534

Query: 334 LVDTSLTFPSFFTTESNLEVQQVLGYSSYE 245
            ++ +  F   +      EV+++LGY S +
Sbjct: 535 KIEAAKAFQEVYAMFKRFEVEELLGYGSID 564



to top

>EUTT_ECOLI (P65643) Ethanolamine utilization cobalamin adenosyltransferase (EC|
           2.5.1.17)
          Length = 267

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +3

Query: 198 GRSLFDSNKTQ---LCAFTS*DEYPSTCCTSRLDSVVKKLGNVSDVSTKRNHTDPSAGAG 368
           GR   D  + Q   +   TS DE+P  CC      V KK   ++ +S ++         G
Sbjct: 52  GRLFVDDEQQQPQPVHGLTSSDEHPQACCELCRQPVAKKPDTLTHLSAEKMVAKSDPRLG 111

Query: 369 NVALAGSSLAL 401
             A+  S++AL
Sbjct: 112 FRAVLDSTIAL 122



to top

>EUTT_ECOL6 (P65644) Ethanolamine utilization cobalamin adenosyltransferase (EC|
           2.5.1.17)
          Length = 267

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +3

Query: 198 GRSLFDSNKTQ---LCAFTS*DEYPSTCCTSRLDSVVKKLGNVSDVSTKRNHTDPSAGAG 368
           GR   D  + Q   +   TS DE+P  CC      V KK   ++ +S ++         G
Sbjct: 52  GRLFVDDEQQQPQPVHGLTSSDEHPQACCELCRQPVAKKPDTLTHLSAEKMVAKSDPRLG 111

Query: 369 NVALAGSSLAL 401
             A+  S++AL
Sbjct: 112 FRAVLDSTIAL 122



to top

>CX022_HUMAN (Q6ZTR5) Protein CXorf22|
          Length = 976

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = +1

Query: 124 QLISTKALKAESRRQQTYCFIRETGEDPSSIQIKHNCALLLHKMNILALVVLP 282
           +L++T+ + ++         ++    +PS+ Q KH+C+L+L    I  ++V P
Sbjct: 701 RLLTTRGIASQEEESVRRKVLKGLKSEPSTPQEKHDCSLMLTPKQIHQVIVGP 753


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,346,431
Number of Sequences: 219361
Number of extensions: 1401671
Number of successful extensions: 3532
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3532
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top