ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19m23 |
|---|---|
| Clone Library Name | barley_pub |
>RL19C_ARATH (P49693) 60S ribosomal protein L19-3| Length = 208 Score = 109 bits (273), Expect = 4e-24 Identities = 55/81 (67%), Positives = 60/81 (74%) Frame = -2 Query: 526 LLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFXXXXX 347 LL+KYRE KKID+HMYHDMY+KVKGN+FKNKRVLMESIHKSKAEKAREKTLSDQF Sbjct: 105 LLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA 164 Query: 346 XXXXXXXXXXXXXXXRLAQGP 284 RLA+GP Sbjct: 165 KNKASRERKHARREERLAKGP 185
>RL19A_ARATH (Q9SRX2) 60S ribosomal protein L19-1| Length = 214 Score = 109 bits (273), Expect = 4e-24 Identities = 55/81 (67%), Positives = 60/81 (74%) Frame = -2 Query: 526 LLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFXXXXX 347 LL+KYRE KKIDKHMYHDMY++VKGN+FKNKRVLMESIHKSKAEKAREKTLSDQF Sbjct: 105 LLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA 164 Query: 346 XXXXXXXXXXXXXXXRLAQGP 284 RLA+GP Sbjct: 165 KNKASRERKHARREERLAKGP 185
>RL19B_ARATH (Q9LUQ6) 60S ribosomal protein L19-2| Length = 209 Score = 105 bits (262), Expect = 8e-23 Identities = 53/80 (66%), Positives = 58/80 (72%) Frame = -2 Query: 523 LRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFXXXXXX 344 L KYRE+KKID+HMYHDMY+KVKGN+FKNKRVLMESIHK KAEKAREKTL+DQF Sbjct: 106 LSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIK 165 Query: 343 XXXXXXXXXXXXXXRLAQGP 284 RLAQGP Sbjct: 166 NKASRERKFARREERLAQGP 185
>RL19_RAT (P84100) 60S ribosomal protein L19| Length = 196 Score = 92.0 bits (227), Expect = 9e-19 Identities = 41/54 (75%), Positives = 50/54 (92%) Frame = -2 Query: 526 LLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 365 LLR+YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 105 LLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_PONPY (Q5RB99) 60S ribosomal protein L19| Length = 196 Score = 92.0 bits (227), Expect = 9e-19 Identities = 41/54 (75%), Positives = 50/54 (92%) Frame = -2 Query: 526 LLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 365 LLR+YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 105 LLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_MOUSE (P84099) 60S ribosomal protein L19| Length = 196 Score = 92.0 bits (227), Expect = 9e-19 Identities = 41/54 (75%), Positives = 50/54 (92%) Frame = -2 Query: 526 LLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 365 LLR+YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 105 LLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_MACFA (Q8HXN9) 60S ribosomal protein L19| Length = 196 Score = 92.0 bits (227), Expect = 9e-19 Identities = 41/54 (75%), Positives = 50/54 (92%) Frame = -2 Query: 526 LLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 365 LLR+YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 105 LLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_HUMAN (P84098) 60S ribosomal protein L19| Length = 196 Score = 92.0 bits (227), Expect = 9e-19 Identities = 41/54 (75%), Positives = 50/54 (92%) Frame = -2 Query: 526 LLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 365 LLR+YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 105 LLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_BOVIN (Q3T0W9) 60S ribosomal protein L19| Length = 196 Score = 92.0 bits (227), Expect = 9e-19 Identities = 41/54 (75%), Positives = 50/54 (92%) Frame = -2 Query: 526 LLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 365 LLR+YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 105 LLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_XENLA (Q7ZYS1) 60S ribosomal protein L19| Length = 197 Score = 92.0 bits (227), Expect = 9e-19 Identities = 41/54 (75%), Positives = 50/54 (92%) Frame = -2 Query: 526 LLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 365 LLR+YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 105 LLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_BRARE (Q6P5L3) 60S ribosomal protein L19| Length = 196 Score = 90.5 bits (223), Expect = 3e-18 Identities = 40/54 (74%), Positives = 49/54 (90%) Frame = -2 Query: 526 LLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 365 LLR+YREAKKID+HMYH +YL+ KGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 105 LLRRYREAKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_ICTPU (Q90YU8) 60S ribosomal protein L19| Length = 196 Score = 89.4 bits (220), Expect = 6e-18 Identities = 39/54 (72%), Positives = 49/54 (90%) Frame = -2 Query: 526 LLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 365 LLR+YRE+KKID+HMYH +YL+ KGN+FKNKR+LME IHK KA++AR+K LSDQ Sbjct: 105 LLRRYRESKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQ 158
>RL19_DROME (P36241) 60S ribosomal protein L19| Length = 203 Score = 89.0 bits (219), Expect = 7e-18 Identities = 39/54 (72%), Positives = 48/54 (88%) Frame = -2 Query: 526 LLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 365 LL+KYR++KKID+H+YHD+Y+K KGN+FKNKRVLME IHK KAEK R K L+DQ Sbjct: 105 LLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQ 158
>RL19_DICDI (P14329) 60S ribosomal protein L19 (Vegetative-specific protein| V14) (22 kDa calmodulin-binding protein) Length = 186 Score = 81.3 bits (199), Expect = 2e-15 Identities = 38/54 (70%), Positives = 44/54 (81%) Frame = -2 Query: 526 LLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 365 LL+KYREAKKIDKH Y ++YLK KGN+FKNKR L+E I KSK EK REK + DQ Sbjct: 105 LLKKYREAKKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQ 158
>RL19_CAEEL (O02639) 60S ribosomal protein L19| Length = 198 Score = 75.1 bits (183), Expect = 1e-13 Identities = 33/54 (61%), Positives = 43/54 (79%) Frame = -2 Query: 526 LLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 365 LLR+YR+AKK+DKH+YH++YL+ KGN FKNK+ L+E I K K E R K L+DQ Sbjct: 105 LLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158
>RL19_SCHPO (P05734) 60S ribosomal protein L19 (YL15)| Length = 192 Score = 71.6 bits (174), Expect = 1e-12 Identities = 32/54 (59%), Positives = 42/54 (77%) Frame = -2 Query: 526 LLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 365 LLRKYRE+ KIDKH+YH +YL+ KGN FK+KR L+E I ++KAE R K + +Q Sbjct: 104 LLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 157
>RL19_YEAST (P05735) 60S ribosomal protein L19 (L23) (YL14) (RP33) (RP15L)| Length = 188 Score = 65.9 bits (159), Expect = 7e-11 Identities = 30/54 (55%), Positives = 42/54 (77%) Frame = -2 Query: 526 LLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 365 LL KYR+A KIDKH+YH +Y + KGN FK+KR L+E I ++KA+ REK L+++ Sbjct: 104 LLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEE 157
>RL19_PYRHO (O59437) 50S ribosomal protein L19e| Length = 150 Score = 39.7 bits (91), Expect = 0.005 Identities = 17/33 (51%), Positives = 22/33 (66%) Frame = -2 Query: 523 LRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVL 425 LRK +E KKID+ Y +Y++ KG FKNK L Sbjct: 106 LRKLKEQKKIDRKTYRMLYIRAKGGQFKNKHQL 138
>RL19_PYRAB (Q9V1V3) 50S ribosomal protein L19e| Length = 151 Score = 38.9 bits (89), Expect = 0.009 Identities = 18/46 (39%), Positives = 26/46 (56%) Frame = -2 Query: 523 LRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAR 386 LRK +E KKID+ Y +Y++ KG FK+K L + + K R Sbjct: 106 LRKLKEQKKIDRRTYRMLYIRAKGGQFKSKHQLYMFLEEHNLLKKR 151
>RL19_PYRFU (Q8U016) 50S ribosomal protein L19e (PfeL19)| Length = 150 Score = 37.4 bits (85), Expect = 0.026 Identities = 16/33 (48%), Positives = 21/33 (63%) Frame = -2 Query: 523 LRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVL 425 LRK + KKID+ Y +Y++ KG FKNK L Sbjct: 106 LRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQL 138
>RL19_SULAC (O05639) 50S ribosomal protein L19e| Length = 150 Score = 33.1 bits (74), Expect = 0.48 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%) Frame = -2 Query: 523 LRKYREAKKIDKHMYHDMYLKVKGNMFKN----KRVLMESIHK 407 +R R+ IDKH Y +Y + KGN FKN K L + HK Sbjct: 107 IRWLRDNNVIDKHTYRLLYKRAKGNYFKNLSDVKSYLRQMGHK 149
>RL19_SULSO (Q9UX89) 50S ribosomal protein L19e| Length = 151 Score = 32.7 bits (73), Expect = 0.63 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = -2 Query: 523 LRKYREAKKIDKHMYHDMYLKVKGNMFK 440 L+ R+ K ID+H Y ++YLK KG +K Sbjct: 107 LKWLRDHKVIDRHTYRELYLKTKGGNYK 134
>NU1M_RAT (P03889) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.2 bits (69), Expect = 1.8 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 9/50 (18%) Frame = +3 Query: 384 SLAFSALDLWILS---------MRTLLFLNMLPLTFRYMSWYMCLSIFFA 506 +L S LWI + + LL+ N LPLT + WY+ L IF A Sbjct: 263 TLLLSTTFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCMWYISLPIFLA 312
>NU1M_HYLLA (Q96126) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.2 bits (69), Expect = 1.8 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 9/51 (17%) Frame = +3 Query: 384 SLAFSALDLWILS---------MRTLLFLNMLPLTFRYMSWYMCLSIFFAS 509 +L ++L LWI + + LL+ N LPLT + WY+ LS AS Sbjct: 263 TLLLTSLFLWIRTTYPRFRYDQLMYLLWKNFLPLTLTLLMWYISLSTMIAS 313
>POLS_RUBVT (P07566) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 1063 Score = 30.0 bits (66), Expect = 4.1 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = -3 Query: 348 PRARQAGRGRLPGGRRDWPRAP 283 PR R+ RGR G RRDW RAP Sbjct: 59 PRRRRGNRGR--GQRRDWSRAP 78
>RR3_MESVI (Q9MUU2) Chloroplast 30S ribosomal protein S3| Length = 213 Score = 29.6 bits (65), Expect = 5.3 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 11/47 (23%) Frame = -3 Query: 396 RRQERRPYLTSLRPSVPRARQAG--------RGRLPG---GRRDWPR 289 R QER+P+ ++R +V RA++AG GRL G R +W R Sbjct: 125 RLQERKPFRRAIRQAVQRAKRAGVQGIKIQVAGRLNGAEIARSEWVR 171
>Y505_MYCPN (P75281) Hypothetical protein MPN505 (P02_orf253)| Length = 253 Score = 28.9 bits (63), Expect = 9.1 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -2 Query: 505 AKKIDKHMYHDMYLKVKGNMFKNKRVLMES-IHKSKAEKAREKTLS 371 AKK DKH Y D++LK+K N K+ E + K + K K ++ Sbjct: 153 AKKGDKH-YFDLFLKIKSNSDPKKQFTTEKFLTKEEKNKVNGKEIT 197
>POLS_RUBVH (P21480) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 1063 Score = 28.9 bits (63), Expect = 9.1 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -3 Query: 348 PRARQAGRGRLPGGRRDWPRAP 283 PR R+ RGR G R+DW RAP Sbjct: 59 PRRRRGNRGR--GQRKDWSRAP 78
>NXF1_COTJA (P58797) Nuclear RNA export factor 1 (Tip-associating protein)| (Tip-associated protein) (mRNA export factor TAP) Length = 616 Score = 28.9 bits (63), Expect = 9.1 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -3 Query: 393 RQERRPYLTSLRPSVPRARQAGRGRLPGGRRDW 295 R R P+LT +R +P ++G G GGRR+W Sbjct: 85 RPSRAPHLT-VRRDLPPPDRSGGGSRDGGRRNW 116
>NU1M_HALGR (P38598) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 28.9 bits (63), Expect = 9.1 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 9/53 (16%) Frame = +3 Query: 378 VFSLAFSALDLWILS---------MRTLLFLNMLPLTFRYMSWYMCLSIFFAS 509 V +LA + L LWI + + LL+ N LPLT W++ L I AS Sbjct: 261 VKTLALTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHVTLPIISAS 313 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,032,783 Number of Sequences: 219361 Number of extensions: 853728 Number of successful extensions: 2474 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2410 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2472 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
