ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19m18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic prote... 694 0.0
2gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 603 e-169
3gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 276 7e-71
4gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones B... 76 1e-10
5gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long term... 76 1e-10
6gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complet... 68 3e-08
7gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B... 64 5e-07
8gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC cl... 64 5e-07
9emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H 62 2e-06
10gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple... 60 8e-06
11gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transpor... 60 8e-06
12gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retr... 58 3e-05
13gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotra... 58 3e-05
14gb|AY375391.1| Triticum monococcum clone pTm4-P1 A-genome repeti... 56 1e-04
15gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotra... 56 1e-04
16gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposo... 52 0.002
17gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotrans... 52 0.002
18gb|CP000316.1| Polaromonas sp. JS666, complete genome 48 0.030
19gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A1... 48 0.030
20emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroel... 48 0.030
21dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-li... 48 0.030
22gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene lo... 44 0.47
23gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxyl... 44 0.47
24emb|BX649426.8| Zebrafish DNA sequence from clone DKEYP-82D11, c... 42 1.9
25emb|BX324121.9| Zebrafish DNA sequence from clone DKEY-164J20 in... 42 1.9
26gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene clus... 42 1.9
27gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 ge... 42 1.9
28ref|XM_312619.2| Anopheles gambiae str. PEST ENSANGP00000015405 ... 42 1.9
29emb|AL953857.7| Zebrafish DNA sequence from clone CH211-127M7, c... 42 1.9
30gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
31gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.3
32gb|AC159829.10| Mus musculus 10 BAC RP23-269H11 (Roswell Park Ca... 40 7.3
33gb|AY214597.1|AY214594S4 Capra hircus FLJ20436 gene, exon 7 and ... 40 7.3
34gb|AC079443.48| Mus musculus strain C57BL/6J clone rp23-381f7 ma... 40 7.3
35gb|AC006945.17| Mus musculus strain 129/Sv clone ct7-453l13 map ... 40 7.3
36emb|AL158055.12| Human DNA sequence from clone RP11-348F1 on chr... 40 7.3
37emb|AL137797.9| Human DNA sequence from clone RP5-1109J22 on chr... 40 7.3
38gb|AC158571.3| Mus musculus chromosome 3, clone RP23-117E23, com... 40 7.3
39gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rp... 40 7.3
40gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg... 40 7.3
41dbj|AP003570.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
42dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
43gb|AC093864.3| Homo sapiens BAC clone RP11-557J10 from 4, comple... 40 7.3
44gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, gen... 40 7.3
45gb|AC144534.4| Homo sapiens 3 BAC RP11-759J11 (Roswell Park Canc... 40 7.3
46gb|AC154731.2| Mus musculus BAC clone RP23-121M22 from chromosom... 40 7.3
47gb|AC135207.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
48dbj|AK083850.1| Mus musculus 12 days embryo spinal ganglion cDNA... 40 7.3
49dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
50dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
51dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
52dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
53dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
54dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
55dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
56gb|AC124982.13| Mus musculus chromosome 3, clone RP24-173F6, com... 40 7.3
57dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
58dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
59ref|XM_309429.2| Anopheles gambiae str. PEST ENSANGP00000010602 ... 40 7.3
60gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23... 40 7.3
61gb|U29094.1|U29094 Triticum aestivum serine-threonine protein ki... 40 7.3
62gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
63emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb... 40 7.3
64emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 40 7.3
65gb|AC154335.1| Mus musculus BAC clone RP24-499C1 from 13, comple... 40 7.3
66gb|AC117208.3| Mus musculus BAC clone RP23-279D15 from 10, compl... 40 7.3
67dbj|AP003071.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.3 
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast
             intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes,
             complete cds
          Length = 65979

 Score =  694 bits (350), Expect = 0.0
 Identities = 500/542 (92%), Gaps = 6/542 (1%)
 Strand = Plus / Minus

                                                                         
Query: 2     cacagatacaatcaaggtagttcctctacggactacaaaacatggaaaatgctatgctac 61
             |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 27408 cacagatacaatcaaggtagttccgctacggactacaaaacatggaaa-tgctatgctac 27350

                                                                         
Query: 62    cctgc-tgcaggcccacgatcacgaccacgcctcagtcctcgggatagttcaggtagagg 120
             | ||| ||||||||||||||||||||||||||||||||||| |||||||||| || ||||
Sbjct: 27349 cgtgcctgcaggcccacgatcacgaccacgcctcagtcctctggatagttcacgtcgagg 27290

                                                                         
Query: 121   cggtctgtctcctcgtcgtactgccacgccagctgggtgacgtcgggatcatctgtctct 180
             ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 27289 cggtctgtctcctcgtcgtactgccacgccagctgagtgccgtcgggatcatctgtctct 27230

                                                                         
Query: 181   gggatacctgtacctgctgggagtttcggaggaatccgtgagccacggggactcagcaat 240
             ||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27229 ggggtacctgtacttgttgggagtttcggaggaatccgtgagccacggggactcagcaat 27170

                                                                         
Query: 241   ctaagaccttggtgccagaactagtcatgctattgggtaaggtaaggataaagtgtatca 300
             ||||||||||||||||||||||||||||| |||| |||| ||||||| | |||||||| |
Sbjct: 27169 ctaagaccttggtgccagaactagtcatgttattaggtagggtaagggtgaagtgtataa 27110

                                                                         
Query: 301   ggctactgcatcctacgtttgatcaagtgactaacttacgcaagagcga-agtgaaggtg 359
             |||| |  ||||||| | ||||| ||||| ||| ||||||| | ||  |  |||||||||
Sbjct: 27109 ggctgcatcatcctaagcttgattaagtggctatcttacgcga-agtaattgtgaaggtg 27051

                                                                         
Query: 360   gtctacgctaacggtcgggattacttgatcagtaagtgatcctgaacacctacctacggc 419
             |||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 27050 gtctacactagcggtcgggattacttgatcactaagtgatcctgaacacctacctacggc 26991

                                                                         
Query: 420   attcataaccccaccgtgttcccgatcgaagagagatcttcg-agggacagtcacggtta 478
             ||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 26990 attcataactccaccgtgttcccggtcgaagagagatcttcgaagggacagtcacggtta 26931

                                                                         
Query: 479   cgcacacagttggcagttttattagtttatgtttaagttctctaataccggatgttaaca 538
             | |||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 26930 cacacacagttggca-atttattagcttatgtttaagttctctaataccggatgttaaca 26872

               
Query: 539   aa 540
             ||
Sbjct: 26871 aa 26870



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 87/101 (86%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                         
Query: 396   tgatcctgaacacctacctacggcattcataaccccaccgtgttcccgatcgaagagaga 455
             |||||||||||||||||||||| ||  |||||||||||||||| | |||||| |||  ||
Sbjct: 10618 tgatcctgaacacctacctacgtcagacataaccccaccgtgtcctcgatcggagaagga 10559

                                                      
Query: 456   tct-tcg--agggacagtcacggttacgcacacagttggca 493
              ||  ||  || |||||||||||||||||||||||||||||
Sbjct: 10558 actcacgaaagagacagtcacggttacgcacacagttggca 10518
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>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score =  603 bits (304), Expect = e-169
 Identities = 484/540 (89%), Gaps = 3/540 (0%)
 Strand = Plus / Minus

                                                                         
Query: 4     cagatacaatcaaggtagttcctctacggactacaaaacatggaaaatgctatgctaccc 63
             ||||||||| ||||||||||||  |||||||||||||||| || ||||||||||||||||
Sbjct: 74876 cagatacaaacaaggtagttccggtacggactacaaaacaagggaaatgctatgctaccc 74817

                                                                         
Query: 64    tgctgcaggcccacgatcacgaccacgcctcagtcctcgggatagttcaggtagaggcgg 123
              ||||||||||||||||||| |||||| |||||||||| ||||||||||  || ||||| 
Sbjct: 74816 -gctgcaggcccacgatcacaaccacggctcagtcctctggatagttcacataaaggcga 74758

                                                                         
Query: 124   tctgtctcctcgtcgtactgccacgccagctgggtgacgtcgggatcatctgtctctggg 183
             |||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||
Sbjct: 74757 tctgtctcctcgtcgtactgccacgccagctgggtgccgtcgggatcctctgcctctggg 74698

                                                                         
Query: 184   atacctgtacctgctgggagtttcggaggaatccgtgagccacggggactcagcaatcta 243
              ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74697 gtacctgtgcctgctggaagtttcggaggaatccgtgagccacggggactcagcaatcta 74638

                                                                         
Query: 244   agaccttggtgccagaactagtcatgctattgggtaaggtaaggataaagtgtatcaggc 303
             || ||||||||||||| ||||||||| || |||| |||| | || | |||||| ||||||
Sbjct: 74637 aggccttggtgccagatctagtcatgttaatgggcaaggaaggggtgaagtgtttcaggc 74578

                                                                         
Query: 304   tactgcatcctacgtttgatcaagtgactaacttacgcaagagcgaagtgaaggtggtct 363
             | |||||||||| | ||||  ||||| ||| |||||||||  | |||||||  ||| |||
Sbjct: 74577 tgctgcatcctaaggttgaataagtggctagcttacgcaaaggagaagtgacagtgttct 74518

                                                                         
Query: 364   acgctaacggtcgggattacttgatcagtaagtgatcctgaacacctacctacggcattc 423
             |  |||||| ||| || ||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct: 74517 atactaacgatcgtgaatacttgaacagaaagtgatcctgaacacctacctacggcaatc 74458

                                                                         
Query: 424   ataaccccaccgtgttcccgatcgaagagagatcttcg-agggacagtcacggttacgca 482
             |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct: 74457 ataaccccaccgtgttcccggtcgaagagagatcttcgaagggacagtcacggttactca 74398

                                                                         
Query: 483   cacagttggca-gttttattagtttatgtttaagttctctaataccggatgttaacaaaa 541
             |||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 74397 cacagttggcatattttattagtttatgtttaagttttctaataccggatgttaacaaaa 74338



 Score =  603 bits (304), Expect = e-169
 Identities = 484/540 (89%), Gaps = 3/540 (0%)
 Strand = Plus / Minus

                                                                         
Query: 4     cagatacaatcaaggtagttcctctacggactacaaaacatggaaaatgctatgctaccc 63
             ||||||||| ||||||||||||  |||||||||||||||| || ||||||||||||||||
Sbjct: 64071 cagatacaaacaaggtagttccggtacggactacaaaacaagggaaatgctatgctaccc 64012

                                                                         
Query: 64    tgctgcaggcccacgatcacgaccacgcctcagtcctcgggatagttcaggtagaggcgg 123
              |||||||||||||||||||||||||| |||||||||  |||||||||| ||| ||||| 
Sbjct: 64011 -gctgcaggcccacgatcacgaccacggctcagtcctatggatagttcacgtaaaggcga 63953

                                                                         
Query: 124   tctgtctcctcgtcgtactgccacgccagctgggtgacgtcgggatcatctgtctctggg 183
             |||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||
Sbjct: 63952 tctgtctcctcgtcgtactgccacgccagctgggtgccgtcgggatcctctgcctctggg 63893

                                                                         
Query: 184   atacctgtacctgctgggagtttcggaggaatccgtgagccacggggactcagcaatcta 243
              ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63892 gtacctgtgcctgctggaagtttcggaggaatccgtgagccacggggactcagcaatcta 63833

                                                                         
Query: 244   agaccttggtgccagaactagtcatgctattgggtaaggtaaggataaagtgtatcaggc 303
             || ||||||||||||| ||||||||| || |||| |||| | || | |||||| ||||||
Sbjct: 63832 aggccttggtgccagatctagtcatgttaatgggcaaggaaggggtgaagtgtttcaggc 63773

                                                                         
Query: 304   tactgcatcctacgtttgatcaagtgactaacttacgcaagagcgaagtgaaggtggtct 363
             |  ||||||||| | ||||  ||||| ||| |||||||||  | |||||||  ||| |||
Sbjct: 63772 tgttgcatcctaaggttgaataagtggctagcttacgcaaaggagaagtgacagtgttct 63713

                                                                         
Query: 364   acgctaacggtcgggattacttgatcagtaagtgatcctgaacacctacctacggcattc 423
             |  |||||| ||| || ||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct: 63712 atactaacgatcgtgaatacttgaacagaaagtgatcctgaacacctacctacggcaatc 63653

                                                                         
Query: 424   ataaccccaccgtgttcccgatcgaagagagatcttcg-agggacagtcacggttacgca 482
             |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct: 63652 ataaccccaccgtgttcccggtcgaagagagatcttcgaagggacagtcacggttactca 63593

                                                                         
Query: 483   cacagttggca-gttttattagtttatgtttaagttctctaataccggatgttaacaaaa 541
             |||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 63592 cacagttggcatattttattagtttatgtttaagttttctaataccggatgttaacaaaa 63533



 Score =  210 bits (106), Expect = 4e-51
 Identities = 149/162 (91%), Gaps = 1/162 (0%)
 Strand = Plus / Plus

                                                                          
Query: 381    tacttgatcagtaagtgatcctgaacacctacctacggcattcataaccccaccgtgttc 440
              |||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 182244 tacttgatcactaagtgatcctgaacacctacctacgtcaatcataaccccaccgtgttc 182303

                                                                          
Query: 441    ccgatcgaagagagatcttcga-gggacagtcacggttacgcacacagttggcagtttta 499
              ||||||||||||||||||| || |||||||||||||||||||||||||||| || |||||
Sbjct: 182304 ccgatcgaagagagatcttggaggggacagtcacggttacgcacacagttgccaatttta 182363

                                                        
Query: 500    ttagtttatgtttaagttctctaataccggatgttaacaaaa 541
              |||| |||  |||||||| |||||||| ||||||| ||||||
Sbjct: 182364 ttagattagatttaagttgtctaatactggatgttcacaaaa 182405



 Score =  210 bits (106), Expect = 4e-51
 Identities = 170/190 (89%), Gaps = 1/190 (0%)
 Strand = Plus / Plus

                                                                          
Query: 352    tgaaggtggtctacgctaacggtcgggattacttgatcagtaagtgatcctgaacaccta 411
              ||||||||| |||  ||| |||||| ||  ||||||||| ||| ||||||||||||||| 
Sbjct: 162418 tgaaggtggactatactagcggtcgtgaaaacttgatcactaaatgatcctgaacacctg 162477

                                                                          
Query: 412    cctacggcattcataaccccaccgtgttcccgatcgaagagagatcttcgaggg-acagt 470
              |||||| |  |||||| ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 162478 cctacgtccatcataatccctccgtgttcccgatcgaagagagatcttcgaggggacagt 162537

                                                                          
Query: 471    cacggttacgcacacagttggcagttttattagtttatgtttaagttctctaataccgga 530
              ||||||||||||||||||||||| ||||||||| |||||||| |||| ||||||||||||
Sbjct: 162538 cacggttacgcacacagttggcaattttattagattatgtttgagttatctaataccgga 162597

                        
Query: 531    tgttaacaaa 540
              ||||||||||
Sbjct: 162598 tgttaacaaa 162607



 Score =  202 bits (102), Expect = 9e-49
 Identities = 169/190 (88%), Gaps = 1/190 (0%)
 Strand = Plus / Plus

                                                                          
Query: 352    tgaaggtggtctacgctaacggtcgggattacttgatcagtaagtgatcctgaacaccta 411
              ||||||||| |||  ||| |||||| ||  ||||||||| ||| ||||||||||||||| 
Sbjct: 114641 tgaaggtggactatactagcggtcgtgaaaacttgatcactaaatgatcctgaacacctg 114700

                                                                          
Query: 412    cctacggcattcataaccccaccgtgttcccgatcgaagagagatcttcgaggg-acagt 470
              |||||| |  |||||| ||| ||||||||||||||||||||||||| ||||||| |||||
Sbjct: 114701 cctacgtccatcataatccctccgtgttcccgatcgaagagagatcgtcgaggggacagt 114760

                                                                          
Query: 471    cacggttacgcacacagttggcagttttattagtttatgtttaagttctctaataccgga 530
              ||||||||||||||||||||||| ||||||||| |||||||| |||| ||||||||||||
Sbjct: 114761 cacggttacgcacacagttggcaattttattagattatgtttgagttatctaataccgga 114820

                        
Query: 531    tgttaacaaa 540
              ||||||||||
Sbjct: 114821 tgttaacaaa 114830



 Score =  198 bits (100), Expect = 1e-47
 Identities = 226/263 (85%), Gaps = 5/263 (1%)
 Strand = Plus / Plus

                                                                          
Query: 7      atacaatcaaggtagttcctctacggactacaaaacatg-gaaaatgctatgctaccctg 65
              |||||| ||| |||||||  |||||||||||||| |||| ||||||||||||||||||||
Sbjct: 162075 atacaaccaaagtagttctgctacggactacaaa-catgagaaaatgctatgctaccctg 162133

                                                                          
Query: 66     c-tgcaggcccacgatcacgaccacgcctcagtcctcgggatagttcaggtagaggcggt 124
              | ||| |||||| |||||||||||||||||| || |  |||||| ||| ||| |||||||
Sbjct: 162134 cctgctggcccatgatcacgaccacgcctcaatcatgtggatagctcacgtacaggcggt 162193

                                                                          
Query: 125    ctgtctcctcgtcgtactgccacgccagctgggtgacgtcgggatcatctgtctctggga 184
              |||||||||| |||||||||||||||||||| ||| | ||| ||||| |||||||| |  
Sbjct: 162194 ctgtctcctcatcgtactgccacgccagctgcgtgccatcgcgatcaactgtctctcgag 162253

                                                                          
Query: 185    tacctgtacctgctgggagtttcggaggaatccgtgagccacggggactcagcaatctaa 244
              |||||| |||||   || |||  | ||||||| |||||||||||||||||||||||||| 
Sbjct: 162254 tacctgaacctg--tggtgttgtgaaggaatctgtgagccacggggactcagcaatctac 162311

                                     
Query: 245    gaccttggtgccagaactagtca 267
              |||||  ||||||||||||||||
Sbjct: 162312 gacctctgtgccagaactagtca 162334



 Score =  196 bits (99), Expect = 5e-47
 Identities = 169/191 (88%), Gaps = 1/191 (0%)
 Strand = Plus / Plus

                                                                          
Query: 352    tgaaggtggtctacgctaacggtcgggattacttgatcagtaagtgatcctgaacaccta 411
              ||||||||| |||  ||| ||||||  | ||||| |||| ||||||||||||||||||||
Sbjct: 159155 tgaaggtggactatactagcggtcgacaatacttaatcactaagtgatcctgaacaccta 159214

                                                                          
Query: 412    cctacggcattcataaccccaccgtgttcccgatcgaagagagatcttcga-gggacagt 470
              |||||| || |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 159215 cctacgtcaatcataaccccaccgtgttcccgatcgaagagagatcttggaggggacagt 159274

                                                                          
Query: 471    cacggttacgcacacagttggcagttttattagtttatgtttaagttctctaataccgga 530
              |||||||| ||||||||||| || ||||||||| |||  |||||||| |||||||| |||
Sbjct: 159275 cacggttatgcacacagttgccaattttattagattagatttaagttgtctaatactgga 159334

                         
Query: 531    tgttaacaaaa 541
              |||| ||||||
Sbjct: 159335 tgttcacaaaa 159345



 Score =  188 bits (95), Expect = 1e-44
 Identities = 226/263 (85%), Gaps = 5/263 (1%)
 Strand = Plus / Plus

                                                                          
Query: 7      atacaatcaaggtagttcctctacggactacaaaacatg-gaaaatgctatgctaccctg 65
              |||||| | |||||||||  |||||||||||||| |||| ||||||||||||||||||||
Sbjct: 158812 atacaaccgaggtagttcagctacggactacaaa-catgagaaaatgctatgctaccctg 158870

                                                                          
Query: 66     ct-gcaggcccacgatcacgaccacgcctcagtcctcgggatagttcaggtagaggcggt 124
              |  |  |||||| ||||||||||| |||| | || || |||||| ||| ||| ||| |||
Sbjct: 158871 cccgttggcccatgatcacgaccatgcctgaatcgtctggatagctcacgtacaggtggt 158930

                                                                          
Query: 125    ctgtctcctcgtcgtactgccacgccagctgggtgacgtcgggatcatctgtctctggga 184
              | ||||||||||||||||||||||||||||| ||| ||||||||||| ||| ||||||| 
Sbjct: 158931 cggtctcctcgtcgtactgccacgccagctgcgtgccgtcgggatcaactgcctctgggg 158990

                                                                          
Query: 185    tacctgtacctgctgggagtttcggaggaatccgtgagccacggggactcagcaatctaa 244
              |||||| ||||| |||| |||  | || |||| |||||||||||||||||||||||||| 
Sbjct: 158991 tacctgaacctg-tggg-gttgtgaagtaatctgtgagccacggggactcagcaatctat 159048

                                     
Query: 245    gaccttggtgccagaactagtca 267
              ||||| ||||||| |||||||||
Sbjct: 159049 gacctcggtgccaaaactagtca 159071



 Score =  174 bits (88), Expect = 2e-40
 Identities = 200/235 (85%), Gaps = 3/235 (1%)
 Strand = Plus / Plus

                                                                          
Query: 46     gaaaatgctatgctaccctgc-tgcaggcccacgatcacgaccacgcctcagtcctcggg 104
              ||||||||||||||| ||||| ||| |||||| ||||| |||||||||||| || |  ||
Sbjct: 114337 gaaaatgctatgctatcctgcctgctggcccatgatcaggaccacgcctcaatcgtgtgg 114396

                                                                          
Query: 105    atagttcaggtagaggcggtctgtctcctcgtcgtactgccacgccagctgggtgacgtc 164
              |||| ||| ||| ||||||||||||||||| |||||||||||||||||||| ||| | ||
Sbjct: 114397 atagctcacgtacaggcggtctgtctcctcatcgtactgccacgccagctgcgtgccatc 114456

                                                                          
Query: 165    gggatcatctgtctctgggatacctgtacctgctgggagtttcggaggaatccgtgagcc 224
              | ||||| |||||||| |  |||||| |||||   || |||  | ||||||| |||||||
Sbjct: 114457 gcgatcaactgtctctcgagtacctgaacctg--tggtgttgtgaaggaatctgtgagcc 114514

                                                                     
Query: 225    acggggactcagcaatctaagaccttggtgccagaactagtcatgctattgggta 279
              ||||||||||||||||||| |||||  |||||||||||||||| |||||| ||||
Sbjct: 114515 acggggactcagcaatctacgacctctgtgccagaactagtcaagctattaggta 114569



 Score =  172 bits (87), Expect = 8e-40
 Identities = 224/263 (85%), Gaps = 5/263 (1%)
 Strand = Plus / Plus

                                                                          
Query: 7      atacaatcaaggtagttcctctacggactacaaaacatg-gaaaatgctatgctaccctg 65
              |||||| | |||||||||  |||||||||||||| |||| ||||||||||||||||||||
Sbjct: 181872 atacaaccgaggtagttcagctacggactacaaa-catgagaaaatgctatgctaccctg 181930

                                                                          
Query: 66     ct-gcaggcccacgatcacgaccacgcctcagtcctcgggatagttcaggtagaggcggt 124
              |  |  |||||| ||||||||||| |||| | || || |||||| ||| ||| ||| |||
Sbjct: 181931 cccgttggcccatgatcacgaccatgcctgaatcgtctggatagctcacgtacaggtggt 181990

                                                                          
Query: 125    ctgtctcctcgtcgtactgccacgccagctgggtgacgtcgggatcatctgtctctggga 184
              | |||||||||||||||||||||||||| || ||| | ||||||||| ||| ||||||| 
Sbjct: 181991 cggtctcctcgtcgtactgccacgccagttgtgtgccatcgggatcaactgcctctgggg 182050

                                                                          
Query: 185    tacctgtacctgctgggagtttcggaggaatccgtgagccacggggactcagcaatctaa 244
              |||||| ||||| |||| |||  | || |||| |||||||||||||||||||||||||| 
Sbjct: 182051 tacctgaacctg-tggg-gttgtgaagtaatctgtgagccacggggactcagcaatctat 182108

                                     
Query: 245    gaccttggtgccagaactagtca 267
              ||||| ||||||| |||||||||
Sbjct: 182109 gacctcggtgccaaaactagtca 182131



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 87/101 (86%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                          
Query: 396    tgatcctgaacacctacctacggcattcataaccccaccgtgttcccgatcgaagagaga 455
              |||||||||||||||||||||| ||  |||||||||||||||| | ||||||||||  ||
Sbjct: 326703 tgatcctgaacacctacctacgtcagacataaccccaccgtgtcctcgatcgaagaagga 326644

                                                       
Query: 456    tct-tcg--agggacagtcacggttacgcacacagttggca 493
               ||  ||  || |||||||| ||||||||||||||||||||
Sbjct: 326643 actcacgaaagagacagtcaaggttacgcacacagttggca 326603



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 87/101 (86%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                          
Query: 396    tgatcctgaacacctacctacggcattcataaccccaccgtgttcccgatcgaagagaga 455
              |||||||||||||||||||||| ||  |||||||||||||||| | |||||| |||  ||
Sbjct: 178463 tgatcctgaacacctacctacgtcagacataaccccaccgtgtcctcgatcggagaagga 178404

                                                       
Query: 456    tct-tcg--agggacagtcacggttacgcacacagttggca 493
               ||  ||  || |||||||||||||||||||||||||||||
Sbjct: 178403 actcacgaaagagacagtcacggttacgcacacagttggca 178363



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 87/101 (86%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                          
Query: 396    tgatcctgaacacctacctacggcattcataaccccaccgtgttcccgatcgaagagaga 455
              |||||||||||||||||||||| ||  |||||||||||||||| | |||||| |||  ||
Sbjct: 131105 tgatcctgaacacctacctacgtcagacataaccccaccgtgtcctcgatcggagaagga 131046

                                                       
Query: 456    tct-tcg--agggacagtcacggttacgcacacagttggca 493
               ||  ||  || |||||||||||||||||||||||||||||
Sbjct: 131045 actcacgaaagagacagtcacggttacgcacacagttggca 131005
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>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score =  276 bits (139), Expect = 7e-71
 Identities = 226/251 (90%), Gaps = 3/251 (1%)
 Strand = Plus / Plus

                                                                          
Query: 18     gtagttcctctacggactacaaaacatggaaaatgctatgctaccctgc-tgcaggccca 76
              |||||||| |||||||||||||||||| ||||  ||||||||||||||| ||||||||||
Sbjct: 110543 gtagttccgctacggactacaaaacatagaaag-gctatgctaccctgcctgcaggccca 110601

                                                                          
Query: 77     cgatcacgaccacgcctcagtcctcgggatagttcaggtagaggcggtctgtctcctcgt 136
              ||||||||||||||||||| || || |||||||||| ||| | ||||||||||||||| |
Sbjct: 110602 cgatcacgaccacgcctcaatcttctggatagttcacgtacatgcggtctgtctcctcat 110661

                                                                          
Query: 137    cgtactgccacgccagctgggtgacgtcgggatcatctgtctctgggatacctgtacctg 196
              ||||||||||||||||||| ||| ||||||||||||||||||||||| |||||| |||| 
Sbjct: 110662 cgtactgccacgccagctgcgtgccgtcgggatcatctgtctctggggtacctgaaccta 110721

                                                                          
Query: 197    ctgggagtttcggaggaatccgtgagccacggggactcagcaatctaagaccttggtgcc 256
               ||| | ||  | ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 110722 ttggta-ttgtgaaggaatccgtgagccgcggggactcaacaatctaagaccttggtgcc 110780

                         
Query: 257    agaactagtca 267
              |||||||||||
Sbjct: 110781 agaactagtca 110791



 Score =  276 bits (139), Expect = 7e-71
 Identities = 226/251 (90%), Gaps = 3/251 (1%)
 Strand = Plus / Plus

                                                                         
Query: 18    gtagttcctctacggactacaaaacatggaaaatgctatgctaccctgc-tgcaggccca 76
             |||||||| |||||||||||||||||| ||||  ||||||||||||||| ||||||||||
Sbjct: 70828 gtagttccgctacggactacaaaacatagaaag-gctatgctaccctgcctgcaggccca 70886

                                                                         
Query: 77    cgatcacgaccacgcctcagtcctcgggatagttcaggtagaggcggtctgtctcctcgt 136
             ||||||||||||||||||| || || |||||||||| ||| | ||||||||||||||| |
Sbjct: 70887 cgatcacgaccacgcctcaatcttctggatagttcacgtacatgcggtctgtctcctcat 70946

                                                                         
Query: 137   cgtactgccacgccagctgggtgacgtcgggatcatctgtctctgggatacctgtacctg 196
             ||||||||||||||||||| ||| ||||||||||||||||||||||| |||||| |||| 
Sbjct: 70947 cgtactgccacgccagctgcgtgccgtcgggatcatctgtctctggggtacctgaaccta 71006

                                                                         
Query: 197   ctgggagtttcggaggaatccgtgagccacggggactcagcaatctaagaccttggtgcc 256
              ||| | ||  | ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 71007 ttggta-ttgtgaaggaatccgtgagccgcggggactcaacaatctaagaccttggtgcc 71065

                        
Query: 257   agaactagtca 267
             |||||||||||
Sbjct: 71066 agaactagtca 71076



 Score =  244 bits (123), Expect = 3e-61
 Identities = 175/191 (91%), Gaps = 1/191 (0%)
 Strand = Plus / Plus

                                                                          
Query: 352    tgaaggtggtctacgctaacggtcgggattacttgatcagtaagtgatcctgaacaccta 411
              |||||||||||||  ||| |||||| || ||||| |||| ||||||||||||||||||||
Sbjct: 110875 tgaaggtggtctatactagcggtcgtgaatacttcatcattaagtgatcctgaacaccta 110934

                                                                          
Query: 412    cctacggcattcataaccccaccgtgttcccgatcgaagagagatcttcga-gggacagt 470
              |||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||||||
Sbjct: 110935 cctacgtcattcataaccccaccgtgttcccgattgaagagagattttcgaggggacagt 110994

                                                                          
Query: 471    cacggttacgcacacagttggcagttttattagtttatgtttaagttctctaataccgga 530
              ||||| ||||||||||||||||| ||||||||| || |||||||||| ||||||||||||
Sbjct: 110995 cacggatacgcacacagttggcaattttattagcttttgtttaagttatctaataccgga 111054

                         
Query: 531    tgttaacaaaa 541
              |||||||||||
Sbjct: 111055 tgttaacaaaa 111065



 Score =  244 bits (123), Expect = 3e-61
 Identities = 175/191 (91%), Gaps = 1/191 (0%)
 Strand = Plus / Plus

                                                                         
Query: 352   tgaaggtggtctacgctaacggtcgggattacttgatcagtaagtgatcctgaacaccta 411
             |||||||||||||  ||| |||||| || ||||| |||| ||||||||||||||||||||
Sbjct: 71160 tgaaggtggtctatactagcggtcgtgaatacttcatcattaagtgatcctgaacaccta 71219

                                                                         
Query: 412   cctacggcattcataaccccaccgtgttcccgatcgaagagagatcttcga-gggacagt 470
             |||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||||||
Sbjct: 71220 cctacgtcattcataaccccaccgtgttcccgattgaagagagattttcgaggggacagt 71279

                                                                         
Query: 471   cacggttacgcacacagttggcagttttattagtttatgtttaagttctctaataccgga 530
             ||||| ||||||||||||||||| ||||||||| || |||||||||| ||||||||||||
Sbjct: 71280 cacggatacgcacacagttggcaattttattagcttttgtttaagttatctaataccgga 71339

                        
Query: 531   tgttaacaaaa 541
             |||||||||||
Sbjct: 71340 tgttaacaaaa 71350
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>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness
             locus region
          Length = 129099

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 87/101 (86%), Gaps = 3/101 (2%)
 Strand = Plus / Plus

                                                                         
Query: 396   tgatcctgaacacctacctacggcattcataaccccaccgtgttcccgatcgaagagaga 455
             |||||||||||||||||||||| || ||||||||||||||||| | |||||| |||  ||
Sbjct: 68603 tgatcctgaacacctacctacgtcagtcataaccccaccgtgtcctcgatcggagaagga 68662

                                                      
Query: 456   tct-tcg--agggacagtcacggttacgcacacagttggca 493
              ||  ||  || |||| ||||||||||||||||||||||||
Sbjct: 68663 actcacgaaagagacattcacggttacgcacacagttggca 68703
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>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial
             and complete sequences
          Length = 11820

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 87/101 (86%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                         
Query: 396   tgatcctgaacacctacctacggcattcataaccccaccgtgttcccgatcgaagagaga 455
             |||||||||||||||||||||| ||  |||||||||||||||| | |||||| |||  ||
Sbjct: 11276 tgatcctgaacacctacctacgtcagacataaccccaccgtgtcctcgatcggagaagga 11217

                                                      
Query: 456   tct-tcg--agggacagtcacggttacgcacacagttggca 493
              ||  ||  || |||||||||||||||||||||||||||||
Sbjct: 11216 actcacgaaagagacagtcacggttacgcacacagttggca 11176



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 81/97 (83%), Gaps = 3/97 (3%)
 Strand = Plus / Minus

                                                                        
Query: 399  tcctgaacacctacctacggcattcataaccccaccgtgttcccgatcgaagagagatct 458
            ||||||||||||||| ||| ||  |||||||||||||||| | |||||| |||  || ||
Sbjct: 3734 tcctgaacacctacccacgtcagacataaccccaccgtgtcctcgatcggagaaggaact 3675

                                                 
Query: 459  -tcg--agggacagtcacggttacgcacacagttggc 492
              ||  || ||||||||||||||| ||||||||||||
Sbjct: 3674 cacgaaagagacagtcacggttacccacacagttggc 3638
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>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 86/101 (85%), Gaps = 3/101 (2%)
 Strand = Plus / Plus

                                                                          
Query: 396    tgatcctgaacacctacctacggcattcataaccccaccgtgttcccgatcgaagagaga 455
              ||||||||||||| |||||||| ||  |||||||||||||||| | |||||| ||| |||
Sbjct: 103235 tgatcctgaacacatacctacgtcagacataaccccaccgtgtcctcgatcggagaaaga 103294

                                                       
Query: 456    tct-tcg--agggacagtcacggttacgcacacagttggca 493
               ||  ||  || |||||||||||||||||||| ||||||||
Sbjct: 103295 actcacgaaagagacagtcacggttacgcacaaagttggca 103335
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>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness
            locus region
          Length = 160897

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                
Query: 396  tgatcctgaacacctacctacggcattcataaccccaccgtgttcccgatcg 447
            |||||||||||||||| ||||| || ||||||||||||||||| | ||||||
Sbjct: 3773 tgatcctgaacacctaactacgtcagtcataaccccaccgtgtcctcgatcg 3824
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>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete
             sequence
          Length = 113510

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                 
Query: 396   tgatcctgaacacctacctacggcattcataaccccaccgtgttcccgatcg 447
             |||||||||||||||||||||| ||  |||||||||||||||| | ||||||
Sbjct: 16834 tgatcctgaacacctacctacgtcagacataaccccaccgtgtcctcgatcg 16885



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                          
Query: 465   gacagtcacggttacgcacacagttggca 493
             |||||||||||||||||||||||||||||
Sbjct: 16906 gacagtcacggttacgcacacagttggca 16934
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>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H
          Length = 59748

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 83/98 (84%), Gaps = 3/98 (3%)
 Strand = Plus / Plus

                                                                         
Query: 396   tgatcctgaacacctacctacggcattcataaccccaccgtgttcccgatcgaagagaga 455
             |||||| ||||||||||||||| ||  |||||||||||||||| | |||||| |||  ||
Sbjct: 37741 tgatcccgaacacctacctacgtcagacataaccccaccgtgtcctcgatcggagaagga 37800

                                                   
Query: 456   tct-tcg--agggacagtcacggttacgcacacagttg 490
              ||  ||  || ||||||||||||||||||||||||||
Sbjct: 37801 actcacgaaagagacagtcacggttacgcacacagttg 37838
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>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 85/101 (84%), Gaps = 3/101 (2%)
 Strand = Plus / Plus

                                                                         
Query: 396   tgatcctgaacacctacctacggcattcataaccccaccgtgttcccgatcgaagagaga 455
             |||||||||||||||||||||| ||  ||||||||||| |||| | |||||| |||  ||
Sbjct: 65305 tgatcctgaacacctacctacgtcagacataaccccacagtgtcctcgatcggagaagga 65364

                                                      
Query: 456   tct-tcga--gggacagtcacggttacgcacacagttggca 493
              ||  |||  | |||||||||||||||||||||| ||||||
Sbjct: 65365 actcacgatggagacagtcacggttacgcacacaattggca 65405
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>gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transporter HvPT4 gene,
            complete cds
          Length = 6561

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 85/101 (84%), Gaps = 3/101 (2%)
 Strand = Plus / Plus

                                                                        
Query: 396  tgatcctgaacacctacctacggcattcataaccccaccgtgttcccgatcgaagagaga 455
            ||||||||||| ||||||||||  |  |||||||||||||||| | |||||| ||  |||
Sbjct: 3030 tgatcctgaacgcctacctacgttagacataaccccaccgtgtcctcgatcggagtaaga 3089

                                                     
Query: 456  tctt-cga--gggacagtcacggttacgcacacagttggca 493
             ||  |||  | |||||||||||||||||||||||||||||
Sbjct: 3090 actcacgaaagagacagtcacggttacgcacacagttggca 3130
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>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7731

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 210  aggaatccgtgagccacggggactcagcaatct 242
            ||||||| |||||||||||||||||||||||||
Sbjct: 4052 aggaatctgtgagccacggggactcagcaatct 4020



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 392  taagtgatcctgaacacctacctacggcattcataaccccaccgtgttc 440
            |||| |||||||||||||||| |||| ||  ||||||||||||||||||
Sbjct: 3857 taagagatcctgaacacctacatacgtcaaacataaccccaccgtgttc 3809



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 465  gacagtcacggttacgcacacagttgg 491
            |||||||||||||||||||||||||||
Sbjct: 3781 gacagtcacggttacgcacacagttgg 3755
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>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7586

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 392  taagtgatcctgaacacctacctacggcattcataaccccaccgtgttc 440
            |||| |||||||||||||||| |||| ||  ||||||||||||||||||
Sbjct: 3656 taagagatcctgaacacctacttacgtcaaacataaccccaccgtgttc 3608



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 465  gacagtcacggttacgcacacagttgg 491
            |||||||||||||||||||||||||||
Sbjct: 3580 gacagtcacggttacgcacacagttgg 3554



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 210  aggaatccgtgagccacggggactcagcaatct 242
            ||||||| |||||||||||||||||| ||||||
Sbjct: 3850 aggaatctgtgagccacggggactcaacaatct 3818
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>gb|AY375391.1| Triticum monococcum clone pTm4-P1 A-genome repetitive DNA sequence
          Length = 3244

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 203  gtttcggaggaatccgtgagccacggggactcagcaatct 242
            |||||||| | ||| |||||||||||||||||||||||||
Sbjct: 2268 gtttcggaagtatctgtgagccacggggactcagcaatct 2229
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>gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7919

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                    
Query: 385  tgatcagtaagtgatcctgaacacctacctacggcattcataaccccaccgtgttc 440
            |||||| ||| ||||||||||||||||| |||| ||  ||||| ||||||||||||
Sbjct: 3972 tgatcactaactgatcctgaacacctacttacgtcaaacataatcccaccgtgttc 3917



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 218  gtgagccacggggactcagcaatct 242
            |||||||||||||||||| ||||||
Sbjct: 4153 gtgagccacggggactcaacaatct 4129
to top
>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence
          Length = 7674

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 81/97 (83%), Gaps = 3/97 (3%)
 Strand = Plus / Minus

                                                                        
Query: 399  tcctgaacacctacctacggcattcataaccccaccgtgttcccgatcgaagagagatct 458
            ||||||||||||||| ||| ||  |||||||||||||||| | |||||| |||  || ||
Sbjct: 3734 tcctgaacacctacccacgtcagacataaccccaccgtgtcctcgatcggagaaggaact 3675

                                                 
Query: 459  -tcg--agggacagtcacggttacgcacacagttggc 492
              ||  || ||||||||||||||| ||||||||||||
Sbjct: 3674 cacgaaagagacagtcacggttacccacacagttggc 3638
to top
>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal
            repeat, complete sequence
          Length = 7575

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 81/97 (83%), Gaps = 3/97 (3%)
 Strand = Plus / Minus

                                                                        
Query: 399  tcctgaacacctacctacggcattcataaccccaccgtgttcccgatcgaagagagatct 458
            ||||||||||||||| ||| ||  |||||||||||||||| | |||||| |||  || ||
Sbjct: 3734 tcctgaacacctacccacgtcagacataaccccaccgtgtcctcgatcggagaaggaact 3675

                                                 
Query: 459  -tcg--agggacagtcacggttacgcacacagttggc 492
              ||  || ||||||||||||||| ||||||||||||
Sbjct: 3674 cacgaaagagacagtcacggttacccacacagttggc 3638
to top
>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 69      caggcccacgatcacgaccacgcc 92
               ||||||||||||||||||||||||
Sbjct: 3726256 caggcccacgatcacgaccacgcc 3726279
to top
>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence
          Length = 133625

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 219   tgagccacggggactcagcaatct 242
             ||||||||||||||||||||||||
Sbjct: 84546 tgagccacggggactcagcaatct 84569
to top
>emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroelement
          Length = 13271

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 404   aacacctacctacggcattcataaccccaccgtgttcccgatcg 447
             |||||||||||||| ||  |||||||||||||||| | ||||||
Sbjct: 10091 aacacctacctacgtcagacataaccccaccgtgtcctcgatcg 10048
to top
>dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-like retroelement
            BARE-1, gypsy-type retrotransposon BARE-100 DNA, solo-LTR
            sequence
          Length = 3130

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 404  aacacctacctacggcattcataaccccaccgtgttcccgatcg 447
            |||||||||||||| ||  |||||||||||||||| | ||||||
Sbjct: 2534 aacacctacctacgtcagacataaccccaccgtgtcctcgatcg 2491
to top
>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence
          Length = 307015

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 213  aatccgtgagccacggggactcagcaatct 242
            |||| ||||||||| |||||||||||||||
Sbjct: 3211 aatctgtgagccacagggactcagcaatct 3240



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 218    gtgagccacggggactcagcaatct 242
              ||||||||| |||||||||||||||
Sbjct: 284404 gtgagccacagggactcagcaatct 284380



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 218    gtgagccacggggactcagcaatct 242
              ||||||||| |||||||||||||||
Sbjct: 274890 gtgagccacagggactcagcaatct 274866
to top
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and
              SNF2P genes, complete cds; nucellin pseudogene, complete
              sequence; putative transposase, phosphatidylinositol
              phosphatidylcholine transfer protein sec14 cytosolic-like
              protein, and phytochrome P450-like protein genes, complete
              cds; and unknown genes
          Length = 438828

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 213    aatccgtgagccacggggactcagcaatct 242
              |||| ||||||||| |||||||||||||||
Sbjct: 109939 aatctgtgagccacagggactcagcaatct 109910



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 218    gtgagccacggggactcagcaatct 242
              ||||||||| |||||||||||||||
Sbjct: 151363 gtgagccacagggactcagcaatct 151387
to top
>emb|BX649426.8| Zebrafish DNA sequence from clone DKEYP-82D11, complete sequence
          Length = 209340

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 481   cacacagttggcagttttatt 501
             |||||||||||||||||||||
Sbjct: 72973 cacacagttggcagttttatt 72993
to top
>emb|BX324121.9| Zebrafish DNA sequence from clone DKEY-164J20 in linkage group 25,
             complete sequence
          Length = 181165

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 38    aaaacatggaaaatgctatgctacc 62
             |||||||||||| ||||||||||||
Sbjct: 26721 aaaacatggaaattgctatgctacc 26745
to top
>gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene cluster, complete
            sequence
          Length = 16091

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 481  cacacagttggcagttttatt 501
            |||||||||||||||||||||
Sbjct: 2608 cacacagttggcagttttatt 2588
to top
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence
          Length = 215241

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 218    gtgagccacggggactcagcaatct 242
              ||||||||| |||||||||||||||
Sbjct: 101763 gtgagccacagggactcagcaatct 101739
to top
>ref|XM_312619.2| Anopheles gambiae str. PEST ENSANGP00000015405
           (ENSANGG00000012916), partial mRNA
          Length = 2289

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 62  cctgctgcaggcccacgatca 82
           |||||||||||||||||||||
Sbjct: 652 cctgctgcaggcccacgatca 632
to top
>emb|AL953857.7| Zebrafish DNA sequence from clone CH211-127M7, complete sequence
          Length = 175586

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 38    aaaacatggaaaatgctatgctacc 62
             |||||||||||| ||||||||||||
Sbjct: 53173 aaaacatggaaattgctatgctacc 53197
to top
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0052C07,
              complete sequence
          Length = 154528

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 495    ttttattagtttatgtttaa 514
              ||||||||||||||||||||
Sbjct: 112454 ttttattagtttatgtttaa 112473
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 495     ttttattagtttatgtttaa 514
               ||||||||||||||||||||
Sbjct: 9054352 ttttattagtttatgtttaa 9054371
to top
>gb|AC159829.10| Mus musculus 10 BAC RP23-269H11 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 189452

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     tacaatcaaggtagttcctc 27
             ||||||||||||||||||||
Sbjct: 33225 tacaatcaaggtagttcctc 33206
to top
>gb|AY214597.1|AY214594S4 Capra hircus FLJ20436 gene, exon 7 and complete cds; alternatively
           spliced
          Length = 561

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 415 acggcattcataaccccacc 434
           ||||||||||||||||||||
Sbjct: 120 acggcattcataaccccacc 101
to top
>gb|AC079443.48| Mus musculus strain C57BL/6J clone rp23-381f7 map 6, complete sequence
          Length = 207091

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 176   tctctgggatacctgtacctgctg 199
             ||||||||||| ||||||||||||
Sbjct: 65860 tctctgggataactgtacctgctg 65837
to top
>gb|AC006945.17| Mus musculus strain 129/Sv clone ct7-453l13 map 6, complete sequence
          Length = 120311

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 176    tctctgggatacctgtacctgctg 199
              ||||||||||| ||||||||||||
Sbjct: 116164 tctctgggataactgtacctgctg 116141
to top
>emb|AL158055.12| Human DNA sequence from clone RP11-348F1 on chromosome Xp11.1-11.22
              Contains the NUDT11 gene for nudix (nucleoside diphosphate
              linked moiety X)-type motif 11, two novel genes, the NUDT10
              gene for nudix (nucleoside diphosphate linked moiety
              X)-type motif 10 and three CpG islands, complete sequence
          Length = 184873

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 493    agttttattagtttatgttt 512
              ||||||||||||||||||||
Sbjct: 128501 agttttattagtttatgttt 128482
to top
>emb|AL137797.9| Human DNA sequence from clone RP5-1109J22 on chromosome 1 Contains
            three novel genes, the OTX3 gene for orthodenticle
            homolog 3 (Drosophila) and a CpG island, complete
            sequence
          Length = 105345

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  tgccacgccagctgggtgac 161
            ||||||||||||||||||||
Sbjct: 5089 tgccacgccagctgggtgac 5108
to top
>gb|AC158571.3| Mus musculus chromosome 3, clone RP23-117E23, complete sequence
          Length = 197545

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    tgctatgctaccctgctgca 70
             ||||||||||||||||||||
Sbjct: 48308 tgctatgctaccctgctgca 48327
to top
>gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rpg1 region, genomic
            sequence
          Length = 7321

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 396  tgatcctgaacacctacctacggcattcataaccccaccgtgttcccgatcg 447
            |||||||||| |||| | |||| ||  |||||||||||||||| | ||||||
Sbjct: 7178 tgatcctgaagaccttcttacgtcaaacataaccccaccgtgtcctcgatcg 7127
to top
>gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg1 region, genomic
            sequence
          Length = 3124

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 396  tgatcctgaacacctacctacggcattcataaccccaccgtgttcccgatcg 447
            |||||||||| |||| | |||| ||  |||||||||||||||| | ||||||
Sbjct: 1949 tgatcctgaagaccttcttacgtcaaacataaccccaccgtgtcctcgatcg 1898
to top
>dbj|AP003570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0432B10
          Length = 131918

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 495    ttttattagtttatgtttaa 514
              ||||||||||||||||||||
Sbjct: 115198 ttttattagtttatgtttaa 115179
to top
>dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0497A05
          Length = 130919

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 495   ttttattagtttatgtttaa 514
             ||||||||||||||||||||
Sbjct: 40396 ttttattagtttatgtttaa 40415
to top
>gb|AC093864.3| Homo sapiens BAC clone RP11-557J10 from 4, complete sequence
          Length = 128335

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 493   agttttattagtttatgttt 512
             ||||||||||||||||||||
Sbjct: 38213 agttttattagtttatgttt 38194
to top
>gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, genomic sequence
          Length = 103866

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 219   tgagccacggggactcagcaatct 242
             |||||||| |||||||||||||||
Sbjct: 31408 tgagccacagggactcagcaatct 31385
to top
>gb|AC144534.4| Homo sapiens 3 BAC RP11-759J11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 45696

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 487   gttggcagttttattagttt 506
             ||||||||||||||||||||
Sbjct: 41600 gttggcagttttattagttt 41581
to top
>gb|AC154731.2| Mus musculus BAC clone RP23-121M22 from chromosome 14, complete sequence
          Length = 215346

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 488    ttggcagttttattagttta 507
              ||||||||||||||||||||
Sbjct: 101106 ttggcagttttattagttta 101087
to top
>gb|AC135207.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1261C08,
             complete sequence
          Length = 99910

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 495   ttttattagtttatgtttaa 514
             ||||||||||||||||||||
Sbjct: 61388 ttttattagtttatgtttaa 61407
to top
>dbj|AK083850.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130023A17
            product:unclassifiable, full insert sequence
          Length = 3038

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 51   tgctatgctaccctgctgca 70
            ||||||||||||||||||||
Sbjct: 1737 tgctatgctaccctgctgca 1718
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 128      tctcctcgtcgtactgccacgcca 151
                ||||||||||||||| ||||||||
Sbjct: 18406303 tctcctcgtcgtactcccacgcca 18406326
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 495     ttttattagtttatgtttaa 514
               ||||||||||||||||||||
Sbjct: 3816231 ttttattagtttatgtttaa 3816250
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 495     ttttattagtttatgtttaa 514
               ||||||||||||||||||||
Sbjct: 9052185 ttttattagtttatgtttaa 9052204
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 495      ttttattagtttatgtttaa 514
                ||||||||||||||||||||
Sbjct: 26542507 ttttattagtttatgtttaa 26542488
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 495      ttttattagtttatgtttaa 514
                ||||||||||||||||||||
Sbjct: 39485954 ttttattagtttatgtttaa 39485973



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 495      ttttattagtttatgtttaa 514
                ||||||||||||||||||||
Sbjct: 34617904 ttttattagtttatgtttaa 34617885
to top
>dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0085D07
          Length = 172483

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   ttttattagtttatgtttaa 514
             ||||||||||||||||||||
Sbjct: 69921 ttttattagtttatgtttaa 69902
to top
>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1417F08
          Length = 155536

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 495   ttttattagtttatgtttaa 514
             ||||||||||||||||||||
Sbjct: 60968 ttttattagtttatgtttaa 60987
to top
>gb|AC124982.13| Mus musculus chromosome 3, clone RP24-173F6, complete sequence
          Length = 180185

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    tgctatgctaccctgctgca 70
             ||||||||||||||||||||
Sbjct: 85420 tgctatgctaccctgctgca 85401
to top
>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0519E06
          Length = 170634

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   ttttattagtttatgtttaa 514
             ||||||||||||||||||||
Sbjct: 84888 ttttattagtttatgtttaa 84869
to top
>dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1080A02
          Length = 151360

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 495   ttttattagtttatgtttaa 514
             ||||||||||||||||||||
Sbjct: 55747 ttttattagtttatgtttaa 55766
to top
>ref|XM_309429.2| Anopheles gambiae str. PEST ENSANGP00000010602
           (ENSANGG00000008113), partial mRNA
          Length = 1665

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 430 ccaccgtgttcccgatcgaagaga 453
           ||||||||||||||||||| ||||
Sbjct: 173 ccaccgtgttcccgatcgacgaga 196
to top
>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 487   gttggcagttttattagttt 506
             ||||||||||||||||||||
Sbjct: 95050 gttggcagttttattagttt 95069
to top
>gb|U29094.1|U29094 Triticum aestivum serine-threonine protein kinase (TaPK3) gene, exons
            1 and 2
          Length = 2626

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 195  tgctgggagtttcggaggaa 214
            ||||||||||||||||||||
Sbjct: 1006 tgctgggagtttcggaggaa 1025
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 128      tctcctcgtcgtactgccacgcca 151
                ||||||||||||||| ||||||||
Sbjct: 18332529 tctcctcgtcgtactcccacgcca 18332552
to top
>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 138585

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 128   tctcctcgtcgtactgccacgcca 151
             ||||||||||||||| ||||||||
Sbjct: 58202 tctcctcgtcgtactcccacgcca 58225
to top
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 495    ttttattagtttatgtttaa 514
              ||||||||||||||||||||
Sbjct: 248104 ttttattagtttatgtttaa 248085
to top
>gb|AC154335.1| Mus musculus BAC clone RP24-499C1 from 13, complete sequence
          Length = 177948

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 491   gcagttttattagtttatgtttaa 514
             |||||||||||| |||||||||||
Sbjct: 84721 gcagttttattattttatgtttaa 84744
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>gb|AC117208.3| Mus musculus BAC clone RP23-279D15 from 10, complete sequence
          Length = 174202

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 486   agttggcagttttattagtt 505
             ||||||||||||||||||||
Sbjct: 63157 agttggcagttttattagtt 63138
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>dbj|AP003071.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-554A11, complete
              sequence
          Length = 191898

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 419    cattcataaccccaccgtgt 438
              ||||||||||||||||||||
Sbjct: 130495 cattcataaccccaccgtgt 130514


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,414,672
Number of Sequences: 3902068
Number of extensions: 3414672
Number of successful extensions: 60434
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60088
Number of HSP's gapped (non-prelim): 319
length of query: 541
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 518
effective length of database: 17,143,297,704
effective search space: 8880228210672
effective search space used: 8880228210672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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