ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19m17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_493853.1| Oryza sativa (japonica cultivar-group), mRNA Length = 954 Score = 206 bits (104), Expect = 3e-50 Identities = 224/264 (84%) Strand = Plus / Minus Query: 32 cttgtttaccactgacagctgtccatgaacatcagcggctaaaccggtgctcagaggcgc 91 ||||||||||||||| |||||||||||||||||||| |||||||| ||||||| ||| || Sbjct: 666 cttgtttaccactgaaagctgtccatgaacatcagcagctaaaccagtgctcaaaggtgc 607 Query: 92 tgccttaatcacaagatcagcaatatagcgcagatgcaagagaagtcccacaccatcctc 151 || | ||||||||||| ||||| |||||||||||||| || | |||||||| ||||| Sbjct: 606 agctctgatcacaagatctgcaatgtagcgcagatgcaaaaggacccccacaccttcctc 547 Query: 152 gcttgaataaatatcctcgtgattaagaaccacaagcgagcaattcatctcggaagtaag 211 || ||||| |||||||| ||| |||| | || | ||||||||||||||| || ||||| Sbjct: 546 actcgaatatatatcctcatgaataaggaagaccaacgagcaattcatctcagaggtaag 487 Query: 212 tgtcacacaataatgcaggaagtccaagacatcatctgcagaaccattggcagcaacttc 271 ||| ||||||||||||| ||||||||| ||||||||| |||||||| || |||||||| Sbjct: 486 tgtaacacaataatgcaagaagtccaacacatcatctacagaaccacctgctgcaacttc 427 Query: 272 caagagcgaaacatcatctatcat 295 || || ||||||||||| ||||| Sbjct: 426 taacagtgaaacatcatcgatcat 403
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 97.6 bits (49), Expect = 2e-17 Identities = 109/129 (84%) Strand = Plus / Minus Query: 50 ctgtccatgaacatcagcggctaaaccggtgctcagaggcgctgccttaatcacaagatc 109 |||||||||||||||||| |||||||| ||||||| ||| || || | ||||||||||| Sbjct: 9730875 ctgtccatgaacatcagcagctaaaccagtgctcaaaggtgcagctctgatcacaagatc 9730816 Query: 110 agcaatatagcgcagatgcaagagaagtcccacaccatcctcgcttgaataaatatcctc 169 ||||| |||||||||||||| || | |||||||| ||||| || ||||| |||||||| Sbjct: 9730815 tgcaatgtagcgcagatgcaaaaggacccccacaccttcctcactcgaatatatatcctc 9730756 Query: 170 gtgattaag 178 ||| |||| Sbjct: 9730755 atgaataag 9730747 Score = 85.7 bits (43), Expect = 8e-14 Identities = 85/99 (85%) Strand = Plus / Minus Query: 197 catctcggaagtaagtgtcacacaataatgcaggaagtccaagacatcatctgcagaacc 256 |||||| || |||||||| ||||||||||||| ||||||||| ||||||||| ||||||| Sbjct: 9730637 catctcagaggtaagtgtaacacaataatgcaagaagtccaacacatcatctacagaacc 9730578 Query: 257 attggcagcaacttccaagagcgaaacatcatctatcat 295 | || |||||||| || || ||||||||||| ||||| Sbjct: 9730577 acctgctgcaacttctaacagtgaaacatcatcgatcat 9730539
>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete sequence Length = 165113 Score = 97.6 bits (49), Expect = 2e-17 Identities = 109/129 (84%) Strand = Plus / Minus Query: 50 ctgtccatgaacatcagcggctaaaccggtgctcagaggcgctgccttaatcacaagatc 109 |||||||||||||||||| |||||||| ||||||| ||| || || | ||||||||||| Sbjct: 151774 ctgtccatgaacatcagcagctaaaccagtgctcaaaggtgcagctctgatcacaagatc 151715 Query: 110 agcaatatagcgcagatgcaagagaagtcccacaccatcctcgcttgaataaatatcctc 169 ||||| |||||||||||||| || | |||||||| ||||| || ||||| |||||||| Sbjct: 151714 tgcaatgtagcgcagatgcaaaaggacccccacaccttcctcactcgaatatatatcctc 151655 Query: 170 gtgattaag 178 ||| |||| Sbjct: 151654 atgaataag 151646 Score = 85.7 bits (43), Expect = 8e-14 Identities = 85/99 (85%) Strand = Plus / Minus Query: 197 catctcggaagtaagtgtcacacaataatgcaggaagtccaagacatcatctgcagaacc 256 |||||| || |||||||| ||||||||||||| ||||||||| ||||||||| ||||||| Sbjct: 151536 catctcagaggtaagtgtaacacaataatgcaagaagtccaacacatcatctacagaacc 151477 Query: 257 attggcagcaacttccaagagcgaaacatcatctatcat 295 | || |||||||| || || ||||||||||| ||||| Sbjct: 151476 acctgctgcaacttctaacagtgaaacatcatcgatcat 151438
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 97.6 bits (49), Expect = 2e-17 Identities = 109/129 (84%) Strand = Plus / Minus Query: 50 ctgtccatgaacatcagcggctaaaccggtgctcagaggcgctgccttaatcacaagatc 109 |||||||||||||||||| |||||||| ||||||| ||| || || | ||||||||||| Sbjct: 9728996 ctgtccatgaacatcagcagctaaaccagtgctcaaaggtgcagctctgatcacaagatc 9728937 Query: 110 agcaatatagcgcagatgcaagagaagtcccacaccatcctcgcttgaataaatatcctc 169 ||||| |||||||||||||| || | |||||||| ||||| || ||||| |||||||| Sbjct: 9728936 tgcaatgtagcgcagatgcaaaaggacccccacaccttcctcactcgaatatatatcctc 9728877 Query: 170 gtgattaag 178 ||| |||| Sbjct: 9728876 atgaataag 9728868 Score = 85.7 bits (43), Expect = 8e-14 Identities = 85/99 (85%) Strand = Plus / Minus Query: 197 catctcggaagtaagtgtcacacaataatgcaggaagtccaagacatcatctgcagaacc 256 |||||| || |||||||| ||||||||||||| ||||||||| ||||||||| ||||||| Sbjct: 9728758 catctcagaggtaagtgtaacacaataatgcaagaagtccaacacatcatctacagaacc 9728699 Query: 257 attggcagcaacttccaagagcgaaacatcatctatcat 295 | || |||||||| || || ||||||||||| ||||| Sbjct: 9728698 acctgctgcaacttctaacagtgaaacatcatcgatcat 9728660
>gb|AY107274.1| Zea mays PCO083693 mRNA sequence Length = 1123 Score = 83.8 bits (42), Expect = 3e-13 Identities = 84/98 (85%) Strand = Plus / Minus Query: 30 cccttgtttaccactgacagctgtccatgaacatcagcggctaaaccggtgctcagaggc 89 |||||||| || || | ||||||||||||||||||||| || ||||| ||||| | ||| Sbjct: 897 cccttgttcacaaccgccagctgtccatgaacatcagcagccaaaccagtgcttaaaggt 838 Query: 90 gctgccttaatcacaagatcagcaatatagcgcagatg 127 ||||| |||||||||||||| ||||| ||||| ||||| Sbjct: 837 gctgctttaatcacaagatccgcaatgtagcgtagatg 800
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 243 tcatctgcagaaccattggcagca 266 |||||||||||||||||||||||| Sbjct: 12665002 tcatctgcagaaccattggcagca 12665025
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 243 tcatctgcagaaccattggcagca 266 |||||||||||||||||||||||| Sbjct: 12619276 tcatctgcagaaccattggcagca 12619299
>emb|AL844499.5|CNS08CAW Oryza sativa chromosome 12, . BAC OSJNBb0092K12 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 129540 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 243 tcatctgcagaaccattggcagca 266 |||||||||||||||||||||||| Sbjct: 110190 tcatctgcagaaccattggcagca 110213
>emb|BX324200.5| Mouse DNA sequence from clone RP23-382H2 on chromosome 2, complete sequence Length = 180530 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 agaagtcccacaccatcctc 151 |||||||||||||||||||| Sbjct: 171439 agaagtcccacaccatcctc 171420
>gb|AC132132.4| Mus musculus BAC clone RP23-235K2 from 8, complete sequence Length = 198321 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 aagagcgaaacatcatctatcatt 296 |||||| ||||||||||||||||| Sbjct: 163130 aagagcaaaacatcatctatcatt 163153 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,353,601 Number of Sequences: 3902068 Number of extensions: 2353601 Number of successful extensions: 34569 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34511 Number of HSP's gapped (non-prelim): 58 length of query: 336 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 314 effective length of database: 17,147,199,772 effective search space: 5384220728408 effective search space used: 5384220728408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
