ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19m12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK109426.2| Oryza sativa (japonica cultivar-group) cDNA clon... 214 3e-52
2dbj|AK073545.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 3e-52
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 167 5e-38
4dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic D... 167 5e-38
5dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic D... 167 5e-38
6gb|AY105662.1| Zea mays PCO112379 mRNA sequence 137 5e-29
7emb|AL627070.16| Mouse DNA sequence from clone RP23-353E13 on ch... 42 2.1
8gb|AC026384.19|AC026384 Mus musculus 11 BAC RP23-390D17 (Roswell... 42 2.1
9gb|AC019057.8| Homo sapiens BAC clone RP11-121A1 from 2, complet... 42 2.1
10gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence 42 2.1
11emb|AL844904.4| Mouse DNA sequence from clone RP23-315J3 on chro... 42 2.1
12ref|NM_104382.3| Arabidopsis thaliana unknown protein AT1G55080 ... 40 8.4
13gb|AC165157.4| Mus musculus BAC clone RP23-267A24 from chromosom... 40 8.4
14gb|AC117724.14| Mus musculus chromosome 5, clone RP24-347F19, co... 40 8.4
15gb|BC070849.1| Xenopus laevis hypothetical protein MGC84587, mRN... 40 8.4
16gb|AC119954.12| Mus musculus chromosome 1, clone RP24-450P2, com... 40 8.4
17gb|AC092249.3| Canis familiaris clone RP81-256F7, complete sequence 40 8.4
18gb|AY355786.1| Canis familiaris isolate cOR8S6P olfactory recept... 40 8.4
19gb|AC160529.6| Mus musculus chromosome 1, clone RP24-141F19, com... 40 8.4
20ref|XM_846324.1| PREDICTED: Canis familiaris olfactory receptor ... 40 8.4
21ref|XM_751123.1| Ustilago maydis 521 hypothetical protein (UM000... 40 8.4
22gb|AY082333.1| Delftia acidovorans xanthine dehydrogenase small ... 40 8.4
23gb|AC165355.3| Mus musculus BAC clone RP23-129P10 from chromosom... 40 8.4
24gb|AC109214.6| Mus musculus chromosome 10, clone RP23-352E22, co... 40 8.4
25gb|AC110237.8| Mus musculus chromosome 5, clone RP23-104B24, com... 40 8.4
26gb|BC091056.1| Xenopus tropicalis MGC108315 protein, mRNA (cDNA ... 40 8.4
27gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 8.4
28gb|AF170802.6| Homo sapiens chromosome 8 clone GS1-13p3 map cen,... 40 8.4
29ref|NM_001030433.1| Xenopus tropicalis MGC108315 protein (MGC108... 40 8.4
30ref|NM_203664.1| Xenopus tropicalis clathrin, light polypeptide ... 40 8.4
31emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4,... 40 8.4
32gb|AC129555.29| Mus musculus chromosome 5, clone RP24-90F19, com... 40 8.4
33gb|AC103758.14| Homo sapiens chromosome 8, clone CTD-3135A9, com... 40 8.4
34gb|AC149518.2| Xenopus tropicalis clone CH216-59A18, complete se... 40 8.4
35gb|AC158900.4| Mus musculus chromosome 5, clone RP23-168G15, com... 40 8.4
36gb|AC068413.11| Homo sapiens chromosome 8, clone RP11-273I9, com... 40 8.4
37gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, ... 40 8.4
38gb|AF461354.1| Drosophila ercepeae hunchback (hb) gene, partial cds 40 8.4
39gb|AY093241.1| Arabidopsis thaliana unknown protein (At1g55080) ... 40 8.4
40gb|BT006281.1| Arabidopsis thaliana At1g55080 mRNA, complete cds 40 8.4
41ref|NG_004965.1| Canis familiaris cOR8S6P olfactory receptor fam... 40 8.4
42dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
43dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
44gb|AC073944.6|AC073944 Arabidopsis thaliana chromosome 1 BAC T7N... 40 8.4
45gb|AC107885.5| Homo sapiens chromosome 8, clone CTD-2552G2, comp... 40 8.4
46dbj|AP005390.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
47dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
48gb|AC107650.19| Mus musculus chromosome 6, clone RP23-133I9, com... 40 8.4
49gb|AC123994.11| Mus musculus chromosome 5, clone RP24-360P14, co... 40 8.4
50emb|CR760072.2| Xenopus tropicalis finished cDNA, clone TNeu044c07 40 8.4
51gb|BC084329.1| Xenopus laevis hypothetical LOC495134, mRNA (cDNA... 40 8.4
52gb|BC061272.1| Xenopus tropicalis clathrin, light polypeptide (L... 40 8.4 
>dbj|AK109426.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E02, full
           insert sequence
          Length = 1013

 Score =  214 bits (108), Expect = 3e-52
 Identities = 153/168 (91%)
 Strand = Plus / Minus

                                                                       
Query: 444 gttcctccagcaacaacaattgtttcagctgtaatgaaggatgcatcgtcggatgccagg 503
           |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
Sbjct: 833 gttcctccagcaacaacaatagtttcagctgtaatgaatgatgcatcgtctgatgccaag 774

                                                                       
Query: 504 aaagcggcggctgaagccatgtcttccacgctacccaatctcttaagtatgctcctctcg 563
           ||||| ||||||| |||||||||||||||  ||||||||||||||||| ||||||| || 
Sbjct: 773 aaagctgcggctgcagccatgtcttccacagtacccaatctcttaagtgtgctcctgtca 714

                                                           
Query: 564 atgagctcatttctaatggtctcattagttgtgaggaaaccagcaaaa 611
           || ||||||||| ||||||| ||||||||||||||||||| |||||||
Sbjct: 713 ataagctcatttttaatggtgtcattagttgtgaggaaacgagcaaaa 666
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>dbj|AK073545.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041K02, full
           insert sequence
          Length = 1127

 Score =  214 bits (108), Expect = 3e-52
 Identities = 153/168 (91%)
 Strand = Plus / Minus

                                                                       
Query: 444 gttcctccagcaacaacaattgtttcagctgtaatgaaggatgcatcgtcggatgccagg 503
           |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
Sbjct: 925 gttcctccagcaacaacaatagtttcagctgtaatgaatgatgcatcgtctgatgccaag 866

                                                                       
Query: 504 aaagcggcggctgaagccatgtcttccacgctacccaatctcttaagtatgctcctctcg 563
           ||||| ||||||| |||||||||||||||  ||||||||||||||||| ||||||| || 
Sbjct: 865 aaagctgcggctgcagccatgtcttccacagtacccaatctcttaagtgtgctcctgtca 806

                                                           
Query: 564 atgagctcatttctaatggtctcattagttgtgaggaaaccagcaaaa 611
           || ||||||||| ||||||| ||||||||||||||||||| |||||||
Sbjct: 805 ataagctcatttttaatggtgtcattagttgtgaggaaacgagcaaaa 758
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  167 bits (84), Expect = 5e-38
 Identities = 120/132 (90%)
 Strand = Plus / Plus

                                                                           
Query: 444     gttcctccagcaacaacaattgtttcagctgtaatgaaggatgcatcgtcggatgccagg 503
               |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
Sbjct: 2459360 gttcctccagcaacaacaatagtttcagctgtaatgaatgatgcatcgtctgatgccaag 2459419

                                                                           
Query: 504     aaagcggcggctgaagccatgtcttccacgctacccaatctcttaagtatgctcctctcg 563
               ||||| ||||||| |||||||||||||||  ||||||||||||||||| ||||||| || 
Sbjct: 2459420 aaagctgcggctgcagccatgtcttccacagtacccaatctcttaagtgtgctcctgtca 2459479

                           
Query: 564     atgagctcattt 575
               || |||||||||
Sbjct: 2459480 ataagctcattt 2459491



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                 
Query: 578     aatggtctcattagttgtgaggaaaccagcaaaa 611
               |||||| ||||||||||||||||||| |||||||
Sbjct: 2460793 aatggtgtcattagttgtgaggaaacgagcaaaa 2460826
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>dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0095O23
          Length = 159792

 Score =  167 bits (84), Expect = 5e-38
 Identities = 120/132 (90%)
 Strand = Plus / Plus

                                                                          
Query: 444    gttcctccagcaacaacaattgtttcagctgtaatgaaggatgcatcgtcggatgccagg 503
              |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
Sbjct: 137770 gttcctccagcaacaacaatagtttcagctgtaatgaatgatgcatcgtctgatgccaag 137829

                                                                          
Query: 504    aaagcggcggctgaagccatgtcttccacgctacccaatctcttaagtatgctcctctcg 563
              ||||| ||||||| |||||||||||||||  ||||||||||||||||| ||||||| || 
Sbjct: 137830 aaagctgcggctgcagccatgtcttccacagtacccaatctcttaagtgtgctcctgtca 137889

                          
Query: 564    atgagctcattt 575
              || |||||||||
Sbjct: 137890 ataagctcattt 137901



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                
Query: 578    aatggtctcattagttgtgaggaaaccagcaaaa 611
              |||||| ||||||||||||||||||| |||||||
Sbjct: 139203 aatggtgtcattagttgtgaggaaacgagcaaaa 139236
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>dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0406E03
          Length = 201069

 Score =  167 bits (84), Expect = 5e-38
 Identities = 120/132 (90%)
 Strand = Plus / Plus

                                                                         
Query: 444   gttcctccagcaacaacaattgtttcagctgtaatgaaggatgcatcgtcggatgccagg 503
             |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
Sbjct: 45950 gttcctccagcaacaacaatagtttcagctgtaatgaatgatgcatcgtctgatgccaag 46009

                                                                         
Query: 504   aaagcggcggctgaagccatgtcttccacgctacccaatctcttaagtatgctcctctcg 563
             ||||| ||||||| |||||||||||||||  ||||||||||||||||| ||||||| || 
Sbjct: 46010 aaagctgcggctgcagccatgtcttccacagtacccaatctcttaagtgtgctcctgtca 46069

                         
Query: 564   atgagctcattt 575
             || |||||||||
Sbjct: 46070 ataagctcattt 46081



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 578   aatggtctcattagttgtgaggaaaccagcaaaa 611
             |||||| ||||||||||||||||||| |||||||
Sbjct: 47383 aatggtgtcattagttgtgaggaaacgagcaaaa 47416
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>gb|AY105662.1| Zea mays PCO112379 mRNA sequence
          Length = 1142

 Score =  137 bits (69), Expect = 5e-29
 Identities = 147/173 (84%)
 Strand = Plus / Minus

                                                                       
Query: 447 cctccagcaacaacaattgtttcagctgtaatgaaggatgcatcgtcggatgccaggaaa 506
           ||||||||||||||||| |||||||| |||||| | ||||| ||||| || ||||| |||
Sbjct: 943 cctccagcaacaacaatggtttcagccgtaatgtatgatgcgtcgtcagacgccagaaaa 884

                                                                       
Query: 507 gcggcggctgaagccatgtcttccacgctacccaatctcttaagtatgctcctctcgatg 566
           || || || | |||||||||||||||  ||||||||||||||||  || |||||||| | 
Sbjct: 883 gccgcagccgcagccatgtcttccacagtacccaatctcttaagcttggtcctctcgtta 824

                                                                
Query: 567 agctcatttctaatggtctcattagttgtgaggaaaccagcaaaacgtgtagg 619
           ||||| || ||||||||||||||   ||||||||||| |||||| ||||||||
Sbjct: 823 agctctttcctaatggtctcattttctgtgaggaaactagcaaaccgtgtagg 771
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>emb|AL627070.16| Mouse DNA sequence from clone RP23-353E13 on chromosome 11 Contains a
             glyceraldehyde-3-phosphate dehydrogenase (Gapd)
             pseudogene, wo novel genes and a CpG island, complete
             sequence
          Length = 210813

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 88    agaaagcaacactaaaagaaa 108
             |||||||||||||||||||||
Sbjct: 97437 agaaagcaacactaaaagaaa 97417
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>gb|AC026384.19|AC026384 Mus musculus 11 BAC RP23-390D17 (Roswell Park Cancer Institute Mouse
             BAC Library) complete sequence
          Length = 177428

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 88    agaaagcaacactaaaagaaa 108
             |||||||||||||||||||||
Sbjct: 15093 agaaagcaacactaaaagaaa 15073
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>gb|AC019057.8| Homo sapiens BAC clone RP11-121A1 from 2, complete sequence
          Length = 186896

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   aaaacactgaagaactaagat 204
             |||||||||||||||||||||
Sbjct: 69414 aaaacactgaagaactaagat 69434
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>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence
          Length = 184425

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 305    ctcctgagtgacgtcgcaaagcacaacccattg 337
              |||||||||| ||||||| || |||||||||||
Sbjct: 176060 ctcctgagtggcgtcgcagagaacaacccattg 176028
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>emb|AL844904.4| Mouse DNA sequence from clone RP23-315J3 on chromosome X, complete
            sequence
          Length = 186544

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 186  aacactgaagaactaagattt 206
            |||||||||||||||||||||
Sbjct: 8870 aacactgaagaactaagattt 8890
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>ref|NM_104382.3| Arabidopsis thaliana unknown protein AT1G55080 mRNA, complete cds
          Length = 878

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 445 ttcctccagcaacaacaatt 464
           ||||||||||||||||||||
Sbjct: 140 ttcctccagcaacaacaatt 159
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>gb|AC165157.4| Mus musculus BAC clone RP23-267A24 from chromosome 12, complete sequence
          Length = 205444

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 451    cagcaacaacaattgtttca 470
              ||||||||||||||||||||
Sbjct: 123713 cagcaacaacaattgtttca 123732
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>gb|AC117724.14| Mus musculus chromosome 5, clone RP24-347F19, complete sequence
          Length = 183083

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   agacagaggcatgcaaagac 236
             ||||||||||||||||||||
Sbjct: 31856 agacagaggcatgcaaagac 31875
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>gb|BC070849.1| Xenopus laevis hypothetical protein MGC84587, mRNA (cDNA clone
           MGC:84587 IMAGE:6639941), complete cds
          Length = 2043

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 220 cagaggcatgcaaagacgtccagg 243
           ||||||||||||||||| ||||||
Sbjct: 280 cagaggcatgcaaagacttccagg 303
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>gb|AC119954.12| Mus musculus chromosome 1, clone RP24-450P2, complete sequence
          Length = 179212

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   caccagcagcatcatcacca 164
             ||||||||||||||||||||
Sbjct: 71603 caccagcagcatcatcacca 71622
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>gb|AC092249.3| Canis familiaris clone RP81-256F7, complete sequence
          Length = 42879

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 89    gaaagcaacactaaaagaaacaacaggt 116
             ||||||||||  ||||||||||||||||
Sbjct: 12892 gaaagcaacaacaaaagaaacaacaggt 12865
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>gb|AY355786.1| Canis familiaris isolate cOR8S6P olfactory receptor family 8
           subfamily S pseudogene, partial sequence
          Length = 852

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 142 gatcaccagcagcatcatca 161
           ||||||||||||||||||||
Sbjct: 115 gatcaccagcagcatcatca 96
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>gb|AC160529.6| Mus musculus chromosome 1, clone RP24-141F19, complete sequence
          Length = 167687

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    caccagcagcatcatcacca 164
              ||||||||||||||||||||
Sbjct: 161420 caccagcagcatcatcacca 161401
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>ref|XM_846324.1| PREDICTED: Canis familiaris olfactory receptor family 8 subfamily S
           (cOR8S16), mRNA
          Length = 1167

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 142 gatcaccagcagcatcatca 161
           ||||||||||||||||||||
Sbjct: 381 gatcaccagcagcatcatca 362
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>ref|XM_751123.1| Ustilago maydis 521 hypothetical protein (UM00069.1) partial mRNA
          Length = 3267

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 497  tgccaggaaagcggcggctgaagc 520
            ||||||||||||||| ||||||||
Sbjct: 1792 tgccaggaaagcggcagctgaagc 1769
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>gb|AY082333.1| Delftia acidovorans xanthine dehydrogenase small subunit (xdhA),
            xanthine dehydrogenase large subunit (xdhB), putative
            xanthine/uracil permease (xprA), putative sulfonate
            binding protein (ssuA), putative sulfonate transporter
            permease component (ssuC), and putative sulfonate
            transporter ATP-binding subunit (ssuB) genes, complete
            cds
          Length = 9263

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 497  tgccaggaaagcggcggctgaagccatg 524
            ||||| |||||| |||||||||||||||
Sbjct: 8297 tgccatgaaagctgcggctgaagccatg 8270
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>gb|AC165355.3| Mus musculus BAC clone RP23-129P10 from chromosome 6, complete sequence
          Length = 199100

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 426   atctatagtcttgattgtgt 445
             ||||||||||||||||||||
Sbjct: 64524 atctatagtcttgattgtgt 64543
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>gb|AC109214.6| Mus musculus chromosome 10, clone RP23-352E22, complete sequence
          Length = 175569

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   actaagattttatttgcttc 216
             ||||||||||||||||||||
Sbjct: 69891 actaagattttatttgcttc 69910
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>gb|AC110237.8| Mus musculus chromosome 5, clone RP23-104B24, complete sequence
          Length = 243323

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    agacagaggcatgcaaagac 236
              ||||||||||||||||||||
Sbjct: 207797 agacagaggcatgcaaagac 207816
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>gb|BC091056.1| Xenopus tropicalis MGC108315 protein, mRNA (cDNA clone MGC:108315
           IMAGE:7022023), complete cds
          Length = 2276

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 220 cagaggcatgcaaagacgtccagg 243
           ||||||||||||||||| ||||||
Sbjct: 214 cagaggcatgcaaagacttccagg 237
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 146     accagcagcatcatcaccag 165
               ||||||||||||||||||||
Sbjct: 2994317 accagcagcatcatcaccag 2994298
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>gb|AF170802.6| Homo sapiens chromosome 8 clone GS1-13p3 map cen, complete sequence
          Length = 89408

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   actgaagaactaagatttta 208
             ||||||||||||||||||||
Sbjct: 66798 actgaagaactaagatttta 66817
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>ref|NM_001030433.1| Xenopus tropicalis MGC108315 protein (MGC108315), mRNA
          Length = 2276

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 220 cagaggcatgcaaagacgtccagg 243
           ||||||||||||||||| ||||||
Sbjct: 214 cagaggcatgcaaagacttccagg 237
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>ref|NM_203664.1| Xenopus tropicalis clathrin, light polypeptide (Lca) (clta), mRNA
          Length = 1072

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 497 tgccaggaaagcggcggctg 516
           ||||||||||||||||||||
Sbjct: 213 tgccaggaaagcggcggctg 194
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>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24,
             complete sequence
          Length = 146168

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   actgaagaactaagatttta 208
             ||||||||||||||||||||
Sbjct: 29116 actgaagaactaagatttta 29135
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>gb|AC129555.29| Mus musculus chromosome 5, clone RP24-90F19, complete sequence
          Length = 242141

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 584    ctcattagttgtgaggaaaccagc 607
              |||| |||||||||||||||||||
Sbjct: 237876 ctcagtagttgtgaggaaaccagc 237899
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>gb|AC103758.14| Homo sapiens chromosome 8, clone CTD-3135A9, complete sequence
          Length = 235357

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    tgcttcagacagaggcatgc 230
              ||||||||||||||||||||
Sbjct: 107287 tgcttcagacagaggcatgc 107306
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>gb|AC149518.2| Xenopus tropicalis clone CH216-59A18, complete sequence
          Length = 210140

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 220    cagaggcatgcaaagacgtccagg 243
              ||||||||||||||||| ||||||
Sbjct: 195142 cagaggcatgcaaagacttccagg 195119
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>gb|AC158900.4| Mus musculus chromosome 5, clone RP23-168G15, complete sequence
          Length = 211621

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 584    ctcattagttgtgaggaaaccagc 607
              |||| |||||||||||||||||||
Sbjct: 183983 ctcagtagttgtgaggaaaccagc 183960
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>gb|AC068413.11| Homo sapiens chromosome 8, clone RP11-273I9, complete sequence
          Length = 157865

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 459   acaattgtttcagctgtaat 478
             ||||||||||||||||||||
Sbjct: 87186 acaattgtttcagctgtaat 87205
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>gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, RP23-348F2, Complete
             Sequence, complete sequence
          Length = 194881

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 143   atcaccagcagcatcatcaccagtacag 170
             |||||||||| |||||||||||| ||||
Sbjct: 68414 atcaccagcatcatcatcaccagcacag 68441
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>gb|AF461354.1| Drosophila ercepeae hunchback (hb) gene, partial cds
          Length = 483

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 caccagcagcatcatcacca 164
           ||||||||||||||||||||
Sbjct: 85  caccagcagcatcatcacca 104
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>gb|AY093241.1| Arabidopsis thaliana unknown protein (At1g55080) mRNA, complete cds
          Length = 874

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 445 ttcctccagcaacaacaatt 464
           ||||||||||||||||||||
Sbjct: 137 ttcctccagcaacaacaatt 156
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>gb|BT006281.1| Arabidopsis thaliana At1g55080 mRNA, complete cds
          Length = 735

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 445 ttcctccagcaacaacaatt 464
           ||||||||||||||||||||
Sbjct: 100 ttcctccagcaacaacaatt 119
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>ref|NG_004965.1| Canis familiaris cOR8S6P olfactory receptor family 8 subfamily S
           pseudogene (cOR8S6P) on chromosome 27
          Length = 852

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 142 gatcaccagcagcatcatca 161
           ||||||||||||||||||||
Sbjct: 115 gatcaccagcagcatcatca 96
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 189      actgaagaactaagatttta 208
                ||||||||||||||||||||
Sbjct: 33978219 actgaagaactaagatttta 33978238
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 591      gttgtgaggaaaccagcaaa 610
                ||||||||||||||||||||
Sbjct: 11750763 gttgtgaggaaaccagcaaa 11750744
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>gb|AC073944.6|AC073944 Arabidopsis thaliana chromosome 1 BAC T7N22 genomic sequence, complete
             sequence
          Length = 44540

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 445   ttcctccagcaacaacaatt 464
             ||||||||||||||||||||
Sbjct: 14013 ttcctccagcaacaacaatt 13994
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>gb|AC107885.5| Homo sapiens chromosome 8, clone CTD-2552G2, complete sequence
          Length = 163298

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    actgaagaactaagatttta 208
              ||||||||||||||||||||
Sbjct: 103536 actgaagaactaagatttta 103555
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>dbj|AP005390.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0075O18
          Length = 125411

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 591   gttgtgaggaaaccagcaaa 610
             ||||||||||||||||||||
Sbjct: 80463 gttgtgaggaaaccagcaaa 80444
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>dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1705_A03
          Length = 168689

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 591   gttgtgaggaaaccagcaaa 610
             ||||||||||||||||||||
Sbjct: 29048 gttgtgaggaaaccagcaaa 29029
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>gb|AC107650.19| Mus musculus chromosome 6, clone RP23-133I9, complete sequence
          Length = 225883

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 426   atctatagtcttgattgtgt 445
             ||||||||||||||||||||
Sbjct: 53377 atctatagtcttgattgtgt 53358
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>gb|AC123994.11| Mus musculus chromosome 5, clone RP24-360P14, complete sequence
          Length = 148929

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 584    ctcattagttgtgaggaaaccagc 607
              |||| |||||||||||||||||||
Sbjct: 115588 ctcagtagttgtgaggaaaccagc 115565
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>emb|CR760072.2| Xenopus tropicalis finished cDNA, clone TNeu044c07
          Length = 945

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 497 tgccaggaaagcggcggctg 516
           ||||||||||||||||||||
Sbjct: 100 tgccaggaaagcggcggctg 81
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>gb|BC084329.1| Xenopus laevis hypothetical LOC495134, mRNA (cDNA clone MGC:83943
           IMAGE:6861944), complete cds
          Length = 1920

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 220 cagaggcatgcaaagacgtccagg 243
           ||||||||||||||||| ||||||
Sbjct: 241 cagaggcatgcaaagacttccagg 264
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>gb|BC061272.1| Xenopus tropicalis clathrin, light polypeptide (Lca), mRNA (cDNA
           clone MGC:75712 IMAGE:5380749), complete cds
          Length = 1072

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 497 tgccaggaaagcggcggctg 516
           ||||||||||||||||||||
Sbjct: 213 tgccaggaaagcggcggctg 194


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,640,537
Number of Sequences: 3902068
Number of extensions: 5640537
Number of successful extensions: 140329
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140101
Number of HSP's gapped (non-prelim): 228
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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