ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19m02 |
|---|---|
| Clone Library Name | barley_pub |
>RL19C_ARATH (P49693) 60S ribosomal protein L19-3| Length = 208 Score = 70.5 bits (171), Expect(3) = 1e-25 Identities = 38/60 (63%), Positives = 40/60 (66%) Frame = -2 Query: 478 KVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFXXXXXXXXXXXXXXXXXXXXRLAQGP 299 KVKGN+FKNKRVLMESIHKSKAEKAREKTLSDQF RLA+GP Sbjct: 126 KVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGP 185 Score = 49.3 bits (116), Expect(3) = 1e-25 Identities = 21/23 (91%), Positives = 23/23 (100%) Frame = -3 Query: 648 KQKGRHSGYGKRRGTREARLPTK 580 K+KGRHSGYGKR+GTREARLPTK Sbjct: 70 KRKGRHSGYGKRKGTREARLPTK 92 Score = 37.0 bits (84), Expect(3) = 1e-25 Identities = 14/19 (73%), Positives = 17/19 (89%) Frame = -1 Query: 524 EAKKIDKHMYHDMYLKGQG 468 E KKID+HMYHDMY+K +G Sbjct: 111 ETKKIDRHMYHDMYMKVKG 129
>RL19A_ARATH (Q9SRX2) 60S ribosomal protein L19-1| Length = 214 Score = 69.3 bits (168), Expect(3) = 3e-25 Identities = 37/60 (61%), Positives = 40/60 (66%) Frame = -2 Query: 478 KVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFXXXXXXXXXXXXXXXXXXXXRLAQGP 299 +VKGN+FKNKRVLMESIHKSKAEKAREKTLSDQF RLA+GP Sbjct: 126 RVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGP 185 Score = 48.9 bits (115), Expect(3) = 3e-25 Identities = 21/23 (91%), Positives = 22/23 (95%) Frame = -3 Query: 648 KQKGRHSGYGKRRGTREARLPTK 580 K KGRHSGYGKR+GTREARLPTK Sbjct: 70 KMKGRHSGYGKRKGTREARLPTK 92 Score = 37.0 bits (84), Expect(3) = 3e-25 Identities = 14/19 (73%), Positives = 17/19 (89%) Frame = -1 Query: 524 EAKKIDKHMYHDMYLKGQG 468 E KKIDKHMYHDMY++ +G Sbjct: 111 ETKKIDKHMYHDMYMRVKG 129
>RL19B_ARATH (Q9LUQ6) 60S ribosomal protein L19-2| Length = 209 Score = 68.6 bits (166), Expect(3) = 3e-25 Identities = 37/60 (61%), Positives = 39/60 (65%) Frame = -2 Query: 478 KVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFXXXXXXXXXXXXXXXXXXXXRLAQGP 299 KVKGN+FKNKRVLMESIHK KAEKAREKTL+DQF RLAQGP Sbjct: 126 KVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREERLAQGP 185 Score = 49.3 bits (116), Expect(3) = 3e-25 Identities = 21/23 (91%), Positives = 23/23 (100%) Frame = -3 Query: 648 KQKGRHSGYGKRRGTREARLPTK 580 K+KGRHSGYGKR+GTREARLPTK Sbjct: 70 KRKGRHSGYGKRKGTREARLPTK 92 Score = 37.4 bits (85), Expect(3) = 3e-25 Identities = 14/19 (73%), Positives = 18/19 (94%) Frame = -1 Query: 524 EAKKIDKHMYHDMYLKGQG 468 E+KKID+HMYHDMY+K +G Sbjct: 111 ESKKIDRHMYHDMYMKVKG 129
>RL19_DROME (P36241) 60S ribosomal protein L19| Length = 203 Score = 52.8 bits (125), Expect(3) = 3e-17 Identities = 25/33 (75%), Positives = 27/33 (81%) Frame = -2 Query: 478 KVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 380 K KGN+FKNKRVLME IHK KAEK R K L+DQ Sbjct: 126 KCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQ 158 Score = 41.2 bits (95), Expect(3) = 3e-17 Identities = 16/26 (61%), Positives = 21/26 (80%) Frame = -3 Query: 657 TRPKQKGRHSGYGKRRGTREARLPTK 580 T ++KGRH G+GKR+GT AR+PTK Sbjct: 67 TEARRKGRHCGFGKRKGTANARMPTK 92 Score = 33.9 bits (76), Expect(3) = 3e-17 Identities = 11/19 (57%), Positives = 18/19 (94%) Frame = -1 Query: 524 EAKKIDKHMYHDMYLKGQG 468 ++KKID+H+YHD+Y+K +G Sbjct: 111 DSKKIDRHLYHDLYMKCKG 129
>RL19_XENLA (Q7ZYS1) 60S ribosomal protein L19| Length = 197 Score = 55.1 bits (131), Expect(3) = 6e-17 Identities = 25/33 (75%), Positives = 30/33 (90%) Frame = -2 Query: 478 KVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 380 KVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 126 KVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158 Score = 37.0 bits (84), Expect(3) = 6e-17 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = -3 Query: 657 TRPKQKGRHSGYGKRRGTREARLPTKNS 574 T ++KGRH G GKR+GT AR+P K S Sbjct: 67 TLARRKGRHMGIGKRKGTANARMPEKLS 94 Score = 34.7 bits (78), Expect(3) = 6e-17 Identities = 13/19 (68%), Positives = 17/19 (89%) Frame = -1 Query: 524 EAKKIDKHMYHDMYLKGQG 468 E+KKID+HMYH +YLK +G Sbjct: 111 ESKKIDRHMYHSLYLKVKG 129
>RL19_RAT (P84100) 60S ribosomal protein L19| Length = 196 Score = 55.1 bits (131), Expect(3) = 8e-17 Identities = 25/33 (75%), Positives = 30/33 (90%) Frame = -2 Query: 478 KVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 380 KVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 126 KVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158 Score = 36.6 bits (83), Expect(3) = 8e-17 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = -3 Query: 657 TRPKQKGRHSGYGKRRGTREARLPTK 580 T ++KGRH G GKR+GT AR+P K Sbjct: 67 TLARRKGRHMGIGKRKGTANARMPEK 92 Score = 34.7 bits (78), Expect(3) = 8e-17 Identities = 13/19 (68%), Positives = 17/19 (89%) Frame = -1 Query: 524 EAKKIDKHMYHDMYLKGQG 468 E+KKID+HMYH +YLK +G Sbjct: 111 ESKKIDRHMYHSLYLKVKG 129
>RL19_PONPY (Q5RB99) 60S ribosomal protein L19| Length = 196 Score = 55.1 bits (131), Expect(3) = 8e-17 Identities = 25/33 (75%), Positives = 30/33 (90%) Frame = -2 Query: 478 KVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 380 KVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 126 KVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158 Score = 36.6 bits (83), Expect(3) = 8e-17 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = -3 Query: 657 TRPKQKGRHSGYGKRRGTREARLPTK 580 T ++KGRH G GKR+GT AR+P K Sbjct: 67 TLARRKGRHMGIGKRKGTANARMPEK 92 Score = 34.7 bits (78), Expect(3) = 8e-17 Identities = 13/19 (68%), Positives = 17/19 (89%) Frame = -1 Query: 524 EAKKIDKHMYHDMYLKGQG 468 E+KKID+HMYH +YLK +G Sbjct: 111 ESKKIDRHMYHSLYLKVKG 129
>RL19_MOUSE (P84099) 60S ribosomal protein L19| Length = 196 Score = 55.1 bits (131), Expect(3) = 8e-17 Identities = 25/33 (75%), Positives = 30/33 (90%) Frame = -2 Query: 478 KVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 380 KVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 126 KVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158 Score = 36.6 bits (83), Expect(3) = 8e-17 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = -3 Query: 657 TRPKQKGRHSGYGKRRGTREARLPTK 580 T ++KGRH G GKR+GT AR+P K Sbjct: 67 TLARRKGRHMGIGKRKGTANARMPEK 92 Score = 34.7 bits (78), Expect(3) = 8e-17 Identities = 13/19 (68%), Positives = 17/19 (89%) Frame = -1 Query: 524 EAKKIDKHMYHDMYLKGQG 468 E+KKID+HMYH +YLK +G Sbjct: 111 ESKKIDRHMYHSLYLKVKG 129
>RL19_MACFA (Q8HXN9) 60S ribosomal protein L19| Length = 196 Score = 55.1 bits (131), Expect(3) = 8e-17 Identities = 25/33 (75%), Positives = 30/33 (90%) Frame = -2 Query: 478 KVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 380 KVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 126 KVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158 Score = 36.6 bits (83), Expect(3) = 8e-17 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = -3 Query: 657 TRPKQKGRHSGYGKRRGTREARLPTK 580 T ++KGRH G GKR+GT AR+P K Sbjct: 67 TLARRKGRHMGIGKRKGTANARMPEK 92 Score = 34.7 bits (78), Expect(3) = 8e-17 Identities = 13/19 (68%), Positives = 17/19 (89%) Frame = -1 Query: 524 EAKKIDKHMYHDMYLKGQG 468 E+KKID+HMYH +YLK +G Sbjct: 111 ESKKIDRHMYHSLYLKVKG 129
>RL19_HUMAN (P84098) 60S ribosomal protein L19| Length = 196 Score = 55.1 bits (131), Expect(3) = 8e-17 Identities = 25/33 (75%), Positives = 30/33 (90%) Frame = -2 Query: 478 KVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 380 KVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 126 KVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158 Score = 36.6 bits (83), Expect(3) = 8e-17 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = -3 Query: 657 TRPKQKGRHSGYGKRRGTREARLPTK 580 T ++KGRH G GKR+GT AR+P K Sbjct: 67 TLARRKGRHMGIGKRKGTANARMPEK 92 Score = 34.7 bits (78), Expect(3) = 8e-17 Identities = 13/19 (68%), Positives = 17/19 (89%) Frame = -1 Query: 524 EAKKIDKHMYHDMYLKGQG 468 E+KKID+HMYH +YLK +G Sbjct: 111 ESKKIDRHMYHSLYLKVKG 129
>RL19_BOVIN (Q3T0W9) 60S ribosomal protein L19| Length = 196 Score = 55.1 bits (131), Expect(3) = 8e-17 Identities = 25/33 (75%), Positives = 30/33 (90%) Frame = -2 Query: 478 KVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 380 KVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 126 KVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158 Score = 36.6 bits (83), Expect(3) = 8e-17 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = -3 Query: 657 TRPKQKGRHSGYGKRRGTREARLPTK 580 T ++KGRH G GKR+GT AR+P K Sbjct: 67 TLARRKGRHMGIGKRKGTANARMPEK 92 Score = 34.7 bits (78), Expect(3) = 8e-17 Identities = 13/19 (68%), Positives = 17/19 (89%) Frame = -1 Query: 524 EAKKIDKHMYHDMYLKGQG 468 E+KKID+HMYH +YLK +G Sbjct: 111 ESKKIDRHMYHSLYLKVKG 129
>RL19_BRARE (Q6P5L3) 60S ribosomal protein L19| Length = 196 Score = 52.4 bits (124), Expect(3) = 2e-16 Identities = 23/33 (69%), Positives = 29/33 (87%) Frame = -2 Query: 478 KVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 380 + KGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 126 RAKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158 Score = 36.6 bits (83), Expect(3) = 2e-16 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = -3 Query: 657 TRPKQKGRHSGYGKRRGTREARLPTK 580 T ++KGRH G GKR+GT AR+P K Sbjct: 67 TLARRKGRHMGVGKRKGTANARMPEK 92 Score = 35.8 bits (81), Expect(3) = 2e-16 Identities = 13/19 (68%), Positives = 17/19 (89%) Frame = -1 Query: 524 EAKKIDKHMYHDMYLKGQG 468 EAKKID+HMYH +YL+ +G Sbjct: 111 EAKKIDRHMYHSLYLRAKG 129
>RL19_ICTPU (Q90YU8) 60S ribosomal protein L19| Length = 196 Score = 52.4 bits (124), Expect(3) = 5e-16 Identities = 23/33 (69%), Positives = 29/33 (87%) Frame = -2 Query: 478 KVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 380 + KGN+FKNKR+LME IHK KA++AR+K LSDQ Sbjct: 126 RAKGNVFKNKRILMEHIHKLKADRARKKLLSDQ 158 Score = 36.6 bits (83), Expect(3) = 5e-16 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = -3 Query: 657 TRPKQKGRHSGYGKRRGTREARLPTK 580 T ++KGRH G GKR+GT AR+P K Sbjct: 67 TLARRKGRHMGIGKRKGTANARMPEK 92 Score = 34.7 bits (78), Expect(3) = 5e-16 Identities = 12/19 (63%), Positives = 17/19 (89%) Frame = -1 Query: 524 EAKKIDKHMYHDMYLKGQG 468 E+KKID+HMYH +YL+ +G Sbjct: 111 ESKKIDRHMYHSLYLRAKG 129
>RL19_DICDI (P14329) 60S ribosomal protein L19 (Vegetative-specific protein| V14) (22 kDa calmodulin-binding protein) Length = 186 Score = 46.6 bits (109), Expect(3) = 6e-14 Identities = 22/33 (66%), Positives = 25/33 (75%) Frame = -2 Query: 478 KVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 380 K KGN+FKNKR L+E I KSK EK REK + DQ Sbjct: 126 KAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQ 158 Score = 36.2 bits (82), Expect(3) = 6e-14 Identities = 16/23 (69%), Positives = 18/23 (78%) Frame = -3 Query: 648 KQKGRHSGYGKRRGTREARLPTK 580 K+ GRH G G R GTREARLP+K Sbjct: 70 KRLGRHRGAGNRLGTREARLPSK 92 Score = 33.5 bits (75), Expect(3) = 6e-14 Identities = 13/19 (68%), Positives = 16/19 (84%) Frame = -1 Query: 524 EAKKIDKHMYHDMYLKGQG 468 EAKKIDKH Y ++YLK +G Sbjct: 111 EAKKIDKHSYRELYLKAKG 129
>RL19_CAEEL (O02639) 60S ribosomal protein L19| Length = 198 Score = 40.8 bits (94), Expect(3) = 4e-13 Identities = 16/23 (69%), Positives = 20/23 (86%) Frame = -3 Query: 648 KQKGRHSGYGKRRGTREARLPTK 580 ++KGRH+GYGKRRGT AR+P K Sbjct: 70 RRKGRHTGYGKRRGTANARMPEK 92 Score = 38.1 bits (87), Expect(3) = 4e-13 Identities = 18/33 (54%), Positives = 22/33 (66%) Frame = -2 Query: 478 KVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 380 + KGN FKNK+ L+E I K K E R K L+DQ Sbjct: 126 RAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158 Score = 34.7 bits (78), Expect(3) = 4e-13 Identities = 11/19 (57%), Positives = 18/19 (94%) Frame = -1 Query: 524 EAKKIDKHMYHDMYLKGQG 468 +AKK+DKH+YH++YL+ +G Sbjct: 111 DAKKLDKHLYHELYLRAKG 129
>RL19_YEAST (P05735) 60S ribosomal protein L19 (L23) (YL14) (RP33) (RP15L)| Length = 188 Score = 44.7 bits (104), Expect(3) = 6e-12 Identities = 18/23 (78%), Positives = 23/23 (100%) Frame = -3 Query: 648 KQKGRHSGYGKRRGTREARLPTK 580 K++GRHSGYGKR+GTREARLP++ Sbjct: 69 KREGRHSGYGKRKGTREARLPSQ 91 Score = 36.6 bits (83), Expect(3) = 6e-12 Identities = 16/31 (51%), Positives = 24/31 (77%) Frame = -2 Query: 472 KGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 380 KGN FK+KR L+E I ++KA+ REK L+++ Sbjct: 127 KGNAFKHKRALVEHIIQAKADAQREKALNEE 157 Score = 28.1 bits (61), Expect(3) = 6e-12 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = -1 Query: 524 EAKKIDKHMYHDMYLKGQG 468 +A KIDKH+YH +Y + +G Sbjct: 110 DAGKIDKHLYHVLYKESKG 128
>RL19_SCHPO (P05734) 60S ribosomal protein L19 (YL15)| Length = 192 Score = 38.9 bits (89), Expect(3) = 4e-11 Identities = 15/22 (68%), Positives = 20/22 (90%) Frame = -3 Query: 648 KQKGRHSGYGKRRGTREARLPT 583 K+ GRH+GYGKR+GT EAR+P+ Sbjct: 69 KRLGRHTGYGKRKGTAEARMPS 90 Score = 36.6 bits (83), Expect(3) = 4e-11 Identities = 16/33 (48%), Positives = 23/33 (69%) Frame = -2 Query: 478 KVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 380 + KGN FK+KR L+E I ++KAE R K + +Q Sbjct: 125 EAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 157 Score = 31.2 bits (69), Expect(3) = 4e-11 Identities = 11/19 (57%), Positives = 16/19 (84%) Frame = -1 Query: 524 EAKKIDKHMYHDMYLKGQG 468 E+ KIDKH+YH +YL+ +G Sbjct: 110 ESGKIDKHLYHTLYLEAKG 128
>RL19_ARCFU (O28372) 50S ribosomal protein L19e| Length = 149 Score = 31.6 bits (70), Expect = 2.2 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -3 Query: 648 KQKGRHSGYGKRRGTREARLPTK 580 K+KGR G+G R+G + AR+P K Sbjct: 72 KRKGRRRGHGSRKGAKGARMPRK 94
>Z3H7A_HUMAN (Q8IWR0) Zinc finger CCCH-type domain-containing protein 7A| Length = 971 Score = 31.2 bits (69), Expect = 2.9 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Frame = +1 Query: 112 GITKILKHSIQGIQTE-----QNSSYLKI*IRPN*FHRVNRKLKRQIFTSLTSLVPLQVE 276 G TK L HS++ I+ + Q + + P+ H V +L LTS++PLQVE Sbjct: 192 GATKALNHSVEDIEPDLLTPRQEAVPVVSLPAPSFSHEVGSELASVPVMPLTSILPLQVE 251 Query: 277 QELL 288 + L Sbjct: 252 ESAL 255
>LY75_HUMAN (O60449) Lymphocyte antigen 75 precursor (DEC-205) (gp200-MR6)| (CD205 antigen) Length = 1722 Score = 30.8 bits (68), Expect = 3.7 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 7/31 (22%) Frame = +1 Query: 286 LNGPLGPEQAS-------PPSWQSFFHGLPC 357 ++GPLGPE+AS P WQSF L C Sbjct: 626 MSGPLGPEEASPKPDDPCPEGWQSFPASLSC 656
>AA2DB_BRARE (Q8JG69) Alpha-2Db adrenergic receptor (Alpha-2Db adrenoceptor)| (Alpha-2Db adrenoreceptor) (Alpha(2Db)AR) Length = 415 Score = 30.8 bits (68), Expect = 3.7 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 10/93 (10%) Frame = -1 Query: 326 EGGEACSGPKGPFSSSCSTCSGTKE---VKEVKI*RLSFLFTR*NQFGLI*IFKYELFCS 156 EG ++C P G S +CS S ++ +++ + + R +F + +F Sbjct: 290 EGAQSCPKPNGRLSWACSRASELEQEPRARQLSLSKSKLAQMREKRFTFVLAVVMGVFVL 349 Query: 155 VWIPWI-------LCLSIFVIPDTLDTMFHATG 78 W P+ +C IPD+L +F G Sbjct: 350 CWFPFFFTYSLHAICRKSCTIPDSLFNLFFWIG 382 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,397,105 Number of Sequences: 219361 Number of extensions: 1432440 Number of successful extensions: 4130 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3884 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4125 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
