ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19l19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RL39_ORYSA (P51426) 60S ribosomal protein L39 109 4e-24
2RL39_MAIZE (P51425) 60S ribosomal protein L39 109 4e-24
3RL39_ARATH (P51424) 60S ribosomal protein L39 100 2e-21
4RL39_CANAL (Q96W55) 60S ribosomal protein L39 (L46) 93 3e-19
5RL39_ICTPU (Q90YS9) 60S ribosomal protein L39 91 1e-18
6RL39_CHICK (Q98TF5) 60S ribosomal protein L39 90 3e-18
7RL39_RAT (P62893) 60S ribosomal protein L39 90 4e-18
8RL39_MOUSE (P62892) 60S ribosomal protein L39 90 4e-18
9RL39_HUMAN (P62891) 60S ribosomal protein L39 90 4e-18
10RL39_SPOFR (Q962S4) 60S ribosomal protein L39 89 5e-18
11RL39_PLUXY (Q6F482) 60S ribosomal protein L39 89 5e-18
12RL39_DEBHA (Q6BHV8) 60S ribosomal protein L39 89 6e-18
13RL39_DROME (O16130) 60S ribosomal protein L39 (Ribosomal protein... 88 1e-17
14RL39_SCHPO (P05767) 60S ribosomal protein L39 (YL36) 87 2e-17
15RL39_ASHGO (Q758D8) 60S ribosomal protein L39 82 6e-16
16RL39_YEAST (P04650) 60S ribosomal protein L39 (L46) (YL40) 82 1e-15
17RL39L_HUMAN (Q96EH5) 60S ribosomal protein L39-like (L39-2) 82 1e-15
18RL39_KLUMA (P48536) 60S ribosomal protein L39 (L46) 79 6e-15
19RL39_KLULA (Q6CW22) 60S ribosomal protein L39 79 8e-15
20RL39_CAEEL (P52814) 60S ribosomal protein L39 78 1e-14
21RL39_PYRKO (Q5JGT6) 50S ribosomal protein L39e 53 4e-07
22RL39_PYRHO (P59473) 50S ribosomal protein L39e 53 5e-07
23RL39_ARCFU (O28212) 50S ribosomal protein L39e 52 8e-07
24RL39_PYRAB (Q9UYI8) 50S ribosomal protein L39e 52 1e-06
25RL39_AERPE (P59472) 50S ribosomal protein L39e 52 1e-06
26RL39_METTH (O27650) 50S ribosomal protein L39e 51 1e-06
27RL39_PYRFU (Q8U3S6) 50S ribosomal protein L39e 49 9e-06
28RL39_HALMA (P22452) 50S ribosomal protein L39e (Hl39e) (Hl46e) 48 1e-05
29RL39_ENCCU (Q8SQP8) 60S ribosomal protein L39 48 2e-05
30RL39_SULSO (Q980F9) 50S ribosomal protein L39e 47 2e-05
31RL39_SULAC (P13005) 50S ribosomal protein L39e (L46e) 47 2e-05
32RL39_HALSA (Q9HMM9) 50S ribosomal protein L39e 47 2e-05
33RL39_PICTO (Q6L2L2) 50S ribosomal protein L39e 46 5e-05
34RL39_METKA (Q8TUY3) 50S ribosomal protein L39e 45 8e-05
35RL39_SULTO (Q971I1) 50S ribosomal protein L39e 45 1e-04
36RL39_THEVO (Q97CU2) 50S ribosomal protein L39e 45 1e-04
37RL39_METJA (P54056) 50S ribosomal protein L39e 45 1e-04
38RL39_THEAC (Q9HM18) 50S ribosomal protein L39e 44 2e-04
39RL39_METAC (Q8TIN2) 50S ribosomal protein L39e 44 2e-04
40RL39_METMA (Q8PYQ5) 50S ribosomal protein L39e 42 7e-04
41RL39_METMP (Q6M0V9) 50S ribosomal protein L39e 41 0.002
42RL39_PYRAE (Q8ZTX6) 50S ribosomal protein L39e 39 0.010
43ZDS_MAIZE (Q9ZTP4) Zeta-carotene desaturase, chloroplast precurs... 30 3.4
44NU2M_DROSI (P29869) NADH-ubiquinone oxidoreductase chain 2 (EC 1... 30 4.4
45NU2M_DROSE (P29868) NADH-ubiquinone oxidoreductase chain 2 (EC 1... 30 4.4
46NU2M_DROME (P03896) NADH-ubiquinone oxidoreductase chain 2 (EC 1... 30 4.4
47PHYD_ARATH (P42497) Phytochrome D 30 4.4
48NU2M_DROYA (P03895) NADH-ubiquinone oxidoreductase chain 2 (EC 1... 29 5.8 
>RL39_ORYSA (P51426) 60S ribosomal protein L39|
          Length = 51

 Score =  109 bits (272), Expect = 4e-24
 Identities = 49/51 (96%), Positives = 50/51 (98%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 256
           MPSHKTFRIK+KLAKK RQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
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>RL39_MAIZE (P51425) 60S ribosomal protein L39|
          Length = 51

 Score =  109 bits (272), Expect = 4e-24
 Identities = 49/51 (96%), Positives = 50/51 (98%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 256
           MPSHKTFRIK+KLAKK RQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
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>RL39_ARATH (P51424) 60S ribosomal protein L39|
          Length = 51

 Score =  100 bits (250), Expect = 2e-21
 Identities = 44/51 (86%), Positives = 48/51 (94%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 256
           MPSHK+F IK+KL KK RQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
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>RL39_CANAL (Q96W55) 60S ribosomal protein L39 (L46)|
          Length = 51

 Score = 93.2 bits (230), Expect = 3e-19
 Identities = 41/50 (82%), Positives = 45/50 (90%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 259
           MPS K+FR KQKLAK Q+QNRP+P WIR+RTDN IRYNAKRRHWRRTKLG
Sbjct: 1   MPSQKSFRTKQKLAKAQKQNRPLPQWIRLRTDNKIRYNAKRRHWRRTKLG 50
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>RL39_ICTPU (Q90YS9) 60S ribosomal protein L39|
          Length = 51

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 41/50 (82%), Positives = 45/50 (90%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 259
           M SHKTFRIK+ LAKKQ+QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct: 1   MASHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50
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>RL39_CHICK (Q98TF5) 60S ribosomal protein L39|
          Length = 51

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 40/50 (80%), Positives = 45/50 (90%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 259
           M SHKTF+IK+ LAKKQ+QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct: 1   MSSHKTFKIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50
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>RL39_RAT (P62893) 60S ribosomal protein L39|
          Length = 50

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 40/48 (83%), Positives = 44/48 (91%)
 Frame = -3

Query: 402 SHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 259
           SHKTFRIK+ LAKKQ+QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct: 2   SHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 49
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>RL39_MOUSE (P62892) 60S ribosomal protein L39|
          Length = 50

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 40/48 (83%), Positives = 44/48 (91%)
 Frame = -3

Query: 402 SHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 259
           SHKTFRIK+ LAKKQ+QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct: 2   SHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 49
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>RL39_HUMAN (P62891) 60S ribosomal protein L39|
          Length = 50

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 40/48 (83%), Positives = 44/48 (91%)
 Frame = -3

Query: 402 SHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 259
           SHKTFRIK+ LAKKQ+QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct: 2   SHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 49
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>RL39_SPOFR (Q962S4) 60S ribosomal protein L39|
          Length = 51

 Score = 89.4 bits (220), Expect = 5e-18
 Identities = 40/49 (81%), Positives = 44/49 (89%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M +HKTF IK+KLAKK +QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 1   MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49
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>RL39_PLUXY (Q6F482) 60S ribosomal protein L39|
          Length = 51

 Score = 89.4 bits (220), Expect = 5e-18
 Identities = 40/49 (81%), Positives = 44/49 (89%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M +HKTF IK+KLAKK +QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 1   MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49
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>RL39_DEBHA (Q6BHV8) 60S ribosomal protein L39|
          Length = 51

 Score = 89.0 bits (219), Expect = 6e-18
 Identities = 39/49 (79%), Positives = 44/49 (89%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           MPS K+FR KQKLAK Q+QNRP+P WIR+R+ NTIRYNAKRRHWRRTKL
Sbjct: 1   MPSQKSFRTKQKLAKAQKQNRPLPQWIRLRSGNTIRYNAKRRHWRRTKL 49
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>RL39_DROME (O16130) 60S ribosomal protein L39 (Ribosomal protein 46)|
          Length = 51

 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 38/49 (77%), Positives = 44/49 (89%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M +HK+FRIKQKLAKK +QNR +P W+R+RT NTIRYNAKRRHWRRTKL
Sbjct: 1   MAAHKSFRIKQKLAKKLKQNRSVPQWVRLRTGNTIRYNAKRRHWRRTKL 49
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>RL39_SCHPO (P05767) 60S ribosomal protein L39 (YL36)|
          Length = 50

 Score = 87.0 bits (214), Expect = 2e-17
 Identities = 38/48 (79%), Positives = 41/48 (85%)
 Frame = -3

Query: 405 PSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           PSHK+FR KQKLAK  RQNRPIP WIR+RT NT+ YN KRRHWRRTKL
Sbjct: 1   PSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKL 48
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>RL39_ASHGO (Q758D8) 60S ribosomal protein L39|
          Length = 50

 Score = 82.4 bits (202), Expect = 6e-16
 Identities = 34/46 (73%), Positives = 42/46 (91%)
 Frame = -3

Query: 396 KTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 259
           K+F+IKQKLAK + QNRP+P W R++T+NTIRYNAKRRHWRRTK+G
Sbjct: 4   KSFKIKQKLAKAKNQNRPLPQWFRLKTNNTIRYNAKRRHWRRTKMG 49
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>RL39_YEAST (P04650) 60S ribosomal protein L39 (L46) (YL40)|
          Length = 50

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 34/47 (72%), Positives = 44/47 (93%)
 Frame = -3

Query: 402 SHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           + K+FRIKQK+AK ++QNRP+P WIR+RT+NTIRYNAKRR+WRRTK+
Sbjct: 2   AQKSFRIKQKMAKAKKQNRPLPQWIRLRTNNTIRYNAKRRNWRRTKM 48
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>RL39L_HUMAN (Q96EH5) 60S ribosomal protein L39-like (L39-2)|
          Length = 50

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 36/48 (75%), Positives = 42/48 (87%)
 Frame = -3

Query: 402 SHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 259
           SHKTF IK+ LAKKQ+QNRPIP WI+M+  + IRYN+KRRHWRRTKLG
Sbjct: 2   SHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLG 49
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>RL39_KLUMA (P48536) 60S ribosomal protein L39 (L46)|
          Length = 50

 Score = 79.0 bits (193), Expect = 6e-15
 Identities = 34/45 (75%), Positives = 40/45 (88%)
 Frame = -3

Query: 396 KTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           K+F IKQKLAK + QNRP+P W R++T+NTIRYNAKRRHWRRTKL
Sbjct: 4   KSFIIKQKLAKAKNQNRPLPQWFRLKTNNTIRYNAKRRHWRRTKL 48
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>RL39_KLULA (Q6CW22) 60S ribosomal protein L39|
          Length = 50

 Score = 78.6 bits (192), Expect = 8e-15
 Identities = 34/46 (73%), Positives = 40/46 (86%)
 Frame = -3

Query: 396 KTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 259
           K+F IKQKLAK + QNRP+P W R++T+N IRYNAKRRHWRRTKLG
Sbjct: 4   KSFIIKQKLAKAKNQNRPLPQWYRLKTNNKIRYNAKRRHWRRTKLG 49
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>RL39_CAEEL (P52814) 60S ribosomal protein L39|
          Length = 51

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 34/49 (69%), Positives = 42/49 (85%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M + K   IK+KLAKKQ+QNRP+P W+RM+T NT++YNAKRRHWRRTKL
Sbjct: 1   MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKL 49
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>RL39_PYRKO (Q5JGT6) 50S ribosomal protein L39e|
          Length = 51

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 23/49 (46%), Positives = 33/49 (67%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M  +K F  K +LAK  +QNR +P W+ ++T+  +  + KRRHWRRTKL
Sbjct: 1   MARNKPFAKKLRLAKAAKQNRRVPVWVIVKTNRKVITHPKRRHWRRTKL 49
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>RL39_PYRHO (P59473) 50S ribosomal protein L39e|
          Length = 51

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 23/49 (46%), Positives = 32/49 (65%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M  +K    K +LAK  +QNR +P W+ +RT+  +  + KRRHWRRTKL
Sbjct: 1   MARNKPLAKKLRLAKAMKQNRRVPVWVIVRTNRRVLTHPKRRHWRRTKL 49
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>RL39_ARCFU (O28212) 50S ribosomal protein L39e|
          Length = 50

 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 22/45 (48%), Positives = 32/45 (71%)
 Frame = -3

Query: 396 KTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           KT  +K++LAK  +QNR  P WI ++T  ++  + KRRHWRR+KL
Sbjct: 4   KTVGVKKRLAKAYKQNRRAPVWITVKTKRSVFGSPKRRHWRRSKL 48
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>RL39_PYRAB (Q9UYI8) 50S ribosomal protein L39e|
          Length = 51

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 22/49 (44%), Positives = 32/49 (65%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M  +K    K +LAK  +QNR +P W+ ++T+  +  + KRRHWRRTKL
Sbjct: 1   MARNKPLAKKLRLAKAMKQNRRVPVWVIVKTNRRVLTHPKRRHWRRTKL 49
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>RL39_AERPE (P59472) 50S ribosomal protein L39e|
          Length = 51

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 23/49 (46%), Positives = 31/49 (63%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M  +K    K +LA+  + NR IP W+ +RT   IR+N  RRHWRR+KL
Sbjct: 1   MARNKPLGRKLRLARALKSNRAIPVWVVIRTSRRIRFNLLRRHWRRSKL 49
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>RL39_METTH (O27650) 50S ribosomal protein L39e|
          Length = 51

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 22/49 (44%), Positives = 32/49 (65%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M  +K    K ++AK  RQNR +P W+ ++T+  +R + K RHWRRTKL
Sbjct: 1   MSRNKHVARKLRMAKANRQNRRVPAWVMVKTNYRVRSHPKMRHWRRTKL 49
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>RL39_PYRFU (Q8U3S6) 50S ribosomal protein L39e|
          Length = 51

 Score = 48.5 bits (114), Expect = 9e-06
 Identities = 21/49 (42%), Positives = 32/49 (65%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M  +K    K +LAK  +QNR +P W+ ++T+  +  + KRR+WRRTKL
Sbjct: 1   MARNKPLAKKLRLAKALKQNRRVPVWVIVKTNRRVLTHPKRRYWRRTKL 49
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>RL39_HALMA (P22452) 50S ribosomal protein L39e (Hl39e) (Hl46e)|
          Length = 49

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 19/42 (45%), Positives = 28/42 (66%)
 Frame = -3

Query: 396 KTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRR 271
           K+   K++LAK   QN  +P W+ ++TD  ++ N KRRHWRR
Sbjct: 3   KSKATKKRLAKLDNQNSRVPAWVMLKTDREVQRNHKRRHWRR 44
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>RL39_ENCCU (Q8SQP8) 60S ribosomal protein L39|
          Length = 52

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 22/49 (44%), Positives = 29/49 (59%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M S KT  +K +L +  ++NR IP W RM  ++   YN  RRHWR  KL
Sbjct: 1   MGSRKTALVKTRLMRALKRNREIPAWKRMMKEHKGEYNRARRHWRSKKL 49
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>RL39_SULSO (Q980F9) 50S ribosomal protein L39e|
          Length = 51

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 22/49 (44%), Positives = 29/49 (59%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M  +K    K +LAK  + N PIP WI ++T   +RYN  RR+WRR  L
Sbjct: 1   MSRNKPVAKKFRLAKALKANSPIPIWIVLKTRGRVRYNPLRRNWRRNDL 49
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>RL39_SULAC (P13005) 50S ribosomal protein L39e (L46e)|
          Length = 50

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 20/46 (43%), Positives = 29/46 (63%)
 Frame = -3

Query: 399 HKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           HK+   K +L K  ++N PIP W+ ++T   IR+N  RR+WRR  L
Sbjct: 3   HKSLGKKLRLGKALKRNSPIPAWVIIKTQAEIRFNPLRRNWRRNNL 48
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>RL39_HALSA (Q9HMM9) 50S ribosomal protein L39e|
          Length = 49

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 18/37 (48%), Positives = 28/37 (75%)
 Frame = -3

Query: 381 KQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRR 271
           K++LAK +RQN  +P W+ M+T+  ++ N KRR+WRR
Sbjct: 8   KKRLAKLERQNSRVPAWVMMKTNRDVQRNPKRRNWRR 44
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>RL39_PICTO (Q6L2L2) 50S ribosomal protein L39e|
          Length = 51

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M  +K   +K +L K  + NR +P W+ ++TD  +  N KRR+WRR+ L
Sbjct: 1   MARNKPLGLKIRLMKAVKSNRRVPGWVMVKTDRRVTQNYKRRNWRRSNL 49
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>RL39_METKA (Q8TUY3) 50S ribosomal protein L39e|
          Length = 51

 Score = 45.4 bits (106), Expect = 8e-05
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = -3

Query: 381 KQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           K ++AK  +QNR +P W+  +T   +  N KRRHWRR+KL
Sbjct: 10  KLRMAKAIKQNRRVPPWVVAKTGGRVIDNPKRRHWRRSKL 49
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>RL39_SULTO (Q971I1) 50S ribosomal protein L39e|
          Length = 51

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M  +K    K +LA+  + N P+P W+ ++T+   RYN  RR WRR  L
Sbjct: 1   MSKNKPLGRKLRLARALKSNSPVPAWVIIKTNGKFRYNFHRRDWRRNDL 49
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>RL39_THEVO (Q97CU2) 50S ribosomal protein L39e|
          Length = 51

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 21/49 (42%), Positives = 28/49 (57%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M  +K    K +L KK +QNR +P W+ MRT   +  N  RR+WRR  L
Sbjct: 1   MSRNKELGRKIRLMKKVKQNRRVPGWVMMRTARKVTQNPLRRNWRRGNL 49
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>RL39_METJA (P54056) 50S ribosomal protein L39e|
          Length = 51

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 20/49 (40%), Positives = 32/49 (65%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M S+K    K +LAK  +QNR +P ++ ++T   +R++ K R+WRR KL
Sbjct: 1   MGSNKPLGKKVRLAKALKQNRRVPLFVIVKTRGRVRFHPKMRYWRRKKL 49
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>RL39_THEAC (Q9HM18) 50S ribosomal protein L39e|
          Length = 51

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 21/49 (42%), Positives = 28/49 (57%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M  +K    K +L KK +QNR +P W+ MRT   +  N  RR+WRR  L
Sbjct: 1   MSRNKELGRKIRLMKKIKQNRRVPGWVMMRTARKVTQNPLRRNWRRGSL 49
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>RL39_METAC (Q8TIN2) 50S ribosomal protein L39e|
          Length = 51

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 18/47 (38%), Positives = 29/47 (61%)
 Frame = -3

Query: 402 SHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           SH     K++LAK  +QN  +P W+ ++T+  +  + +RRHWRR  L
Sbjct: 2   SHNMKGQKKRLAKAHKQNTRVPVWVIVKTNRKVVSHPRRRHWRRRSL 48
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>RL39_METMA (Q8PYQ5) 50S ribosomal protein L39e|
          Length = 51

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = -3

Query: 402 SHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           SH     K++LAK  +QN  +P W  ++T+  +  + +RRHWRR  L
Sbjct: 2   SHNMKGQKKRLAKAHKQNSRVPVWAIVKTNRKVVSHPRRRHWRRGSL 48
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>RL39_METMP (Q6M0V9) 50S ribosomal protein L39e|
          Length = 51

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M  +K    K +LAK  +QNR +P +   RT  +++ + K RHWRR  L
Sbjct: 1   MAGNKPLGKKIRLAKALKQNRRVPMFAIARTKGSVKQHPKMRHWRRKNL 49
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>RL39_PYRAE (Q8ZTX6) 50S ribosomal protein L39e|
          Length = 51

 Score = 38.5 bits (88), Expect = 0.010
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -3

Query: 408 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 262
           M  +K    K +LA   + NR  P W+ ++T   +  +  RRHWRR KL
Sbjct: 1   MARNKPLGKKLRLAAAFKXNRNPPVWVVVKTKRRVTRSPARRHWRRVKL 49
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>ZDS_MAIZE (Q9ZTP4) Zeta-carotene desaturase, chloroplast precursor (EC|
           1.14.99.30) (Carotene 7,8-desaturase)
          Length = 570

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 23  FRVIKDFNWSNDLLVRQNTELMLNKSGSIISKI*RYP 133
           FR++K     N+LLV+++T   +NK G+I     R+P
Sbjct: 129 FRLMKKVGADNNLLVKEHTHTFVNKGGTIGELDFRFP 165
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>NU2M_DROSI (P29869) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2) (Fragment)
          Length = 274

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = -3

Query: 210 KGLGYLGFIMSRCF*KIXXXXLVAYLGYRHILLIMEPLLFSISSVFCLTSKSFDQLKSFI 31
           +GL ++  +M   + KI    L++YL  +++LLI   L   I ++  L   S  +L +F 
Sbjct: 52  EGLTWMNALMLMTWQKIAPLMLISYLNIKYLLLISVILSVIIGAIGGLNQTSLRKLMAFS 111

Query: 30  TLN 22
           ++N
Sbjct: 112 SIN 114
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>NU2M_DROSE (P29868) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2) (Fragment)
          Length = 274

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = -3

Query: 210 KGLGYLGFIMSRCF*KIXXXXLVAYLGYRHILLIMEPLLFSISSVFCLTSKSFDQLKSFI 31
           +GL ++  +M   + KI    L++YL  +++LLI   L   I ++  L   S  +L +F 
Sbjct: 52  EGLTWMNALMLMTWQKIAPLMLISYLNIKYLLLISVILSVIIGAIGGLNQTSLRKLMAFS 111

Query: 30  TLN 22
           ++N
Sbjct: 112 SIN 114
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>NU2M_DROME (P03896) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 341

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = -3

Query: 210 KGLGYLGFIMSRCF*KIXXXXLVAYLGYRHILLIMEPLLFSISSVFCLTSKSFDQLKSFI 31
           +GL ++  +M   + KI    L++YL  +++LLI   L   I ++  L   S  +L +F 
Sbjct: 119 EGLTWMNALMLMTWQKIAPLMLISYLNIKYLLLISVILSVIIGAIGGLNQTSLRKLMAFS 178

Query: 30  TLN 22
           ++N
Sbjct: 179 SIN 181
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>PHYD_ARATH (P42497) Phytochrome D|
          Length = 1164

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = -3

Query: 348 RPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF*AGDEDDGSRRCRREKGLGYLGFIMSRC 172
           R   +W R  T+  I++   + H           D+DDG R   R     +L  + SRC
Sbjct: 551 RDFLFWFRSHTEKEIKWGGAKHH---------PEDKDDGQRMNPRSSFQTFLEVVKSRC 600
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>NU2M_DROYA (P03895) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 341

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = -3

Query: 210 KGLGYLGFIMSRCF*KIXXXXLVAYLGYRHILLIMEPLLFSISSVFCLTSKSFDQLKSFI 31
           +GL ++  +M   + KI    L++YL  +++LLI   L   I ++  L   S  +L +F 
Sbjct: 119 EGLTWMNALMLMTWQKIAPLMLISYLNIKNLLLISVILSVIIGAIGGLNQTSLRKLMAFS 178

Query: 30  TLN 22
           ++N
Sbjct: 179 SIN 181


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,749,207
Number of Sequences: 219361
Number of extensions: 822254
Number of successful extensions: 2074
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 2025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2074
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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