>SYFA_AQUAE (O67087) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 338

 Score = 36.2 bits (82), Expect = 0.093
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
 Frame = -3

Query: 500 LSEFDLDLQE-KVLLAIRSLLKLPLTDARDFESCGLDSVLYRLGVQLEELPSEEQKEYAG 324
           + + D  L+E K+LL+  S LK  L + R  +  G   V+  L  +++E+PSEE+KEY  
Sbjct: 1   MEKLDKILEELKLLLSSVSSLK-ELQEVRS-KFLGSKGVIKELLKKIKEVPSEERKEYGK 58

Query: 323 EVDALRREVLMLFEQK 276
            V+ L+ E   L ++K
Sbjct: 59  RVNLLKEEAEKLIKEK 74

>SIL1_XENLA (Q6NUA7) Nucleotide exchange factor SIL1 precursor|
          Length = 456

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 26/75 (34%), Positives = 42/75 (56%)
 Frame = -3

Query: 512 VTDMLSEFDLDLQEKVLLAIRSLLKLPLTDARDFESCGLDSVLYRLGVQLEELPSEEQKE 333
           ++D+L   + D +EKVL A+ +L+  PL  A   + C L ++L  L  + E L +EE + 
Sbjct: 377 ISDLLRLPENDSREKVLKAVLTLI--PLCRAEFLKDCNLLTLLNSLRKEYEGLAAEELR- 433

Query: 332 YAGEVDALRREVLML 288
            +GE D    E+L L
Sbjct: 434 -SGEQDGYFSEILSL 447

>MYOC_RABIT (Q866N2) Myocilin precursor (Trabecular meshwork-induced|
           glucocorticoid response protein)
          Length = 490

 Score = 34.7 bits (78), Expect = 0.27
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
 Frame = -3

Query: 497 SEFDLDLQEKVLLAIRSLLKLPLTDARDFESC-----GLDSVLYRLGVQLEELPSEEQKE 333
           SE     Q + + AI+ L +   T   D ES       L+S+L+RL +     P E Q+E
Sbjct: 43  SESSCPEQGQTMSAIQDLQRDSSTQRADLESTKARLSSLESLLHRLTLAQTSGPQEIQEE 102

Query: 332 YAGEVDALRREVLMLFEQKLKLGXXXXXXXXXXXTDEEKRSRRFRSSDSV 183
              E+  LRRE   L  Q  +L              EE++ R  + ++ +
Sbjct: 103 LQKELGTLRRERDQLESQTRELEAAYSNLLRDKSALEEEKRRLMQENEDL 152

>LRRC4_HUMAN (Q9HBW1) Leucine-rich repeat-containing protein 4 precursor (Brain|
           tumor-associated protein LRRC4) (NAG14)
          Length = 653

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +2

Query: 170 TWQPAL-SHWIENAYFSSLHPCVLSMTPP 253
           T++PA  +HW EN+  +SLHP V +++ P
Sbjct: 609 TYKPAHGAHWTENSLGNSLHPTVTTISEP 637

>ARGR1_BACCR (Q81II2) Arginine repressor 1|
          Length = 149

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = -3

Query: 512 VTDMLSEFDLDLQEKV--LLAIRSLLKLPLTDARDFESCGLDSVLYRLGVQLEELPSEEQ 339
           +   + E+++D QE++  LLA + +L    T +RD     L  V  + G+ + ++ SEE 
Sbjct: 10  IKQFVKEYEIDKQERLVELLAKKDVLVTQATVSRDIRELNLTKVPSQEGLMIYKVFSEEH 69

Query: 338 KEYAGEVDALRREVLM 291
            +   ++    REV++
Sbjct: 70  LQTDIKLKKKLREVVV 85

>LRRC4_MOUSE (Q99PH1) Leucine-rich repeat-containing 4 protein precursor (Brain|
           tumor-associated protein MBAG1)
          Length = 652

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +2

Query: 170 TWQPAL-SHWIENAYFSSLHPCVLSMTPP 253
           T++PA  +HW EN+  +SLHP V +++ P
Sbjct: 608 TYKPAHGAHWTENSLGNSLHPTVTTISEP 636

>ZO1_MOUSE (P39447) Tight junction protein ZO-1 (Zonula occludens 1 protein)|
            (Zona occludens 1 protein) (Tight junction protein 1)
          Length = 1745

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +2

Query: 83   YNRYKPPAKVRRDSTWQPDSFQK*STLSKTWQPALSHWIENAYFSSLHPCVLSMTPPRQR 262
            + R++ PA +  DS  + +   + STL    QPA ++ + N Y     P   S T P+  
Sbjct: 1128 FQRFEEPAPLSYDSRTRYEQLPRTSTLRHEEQPAPAYEVHNRYRPEAQP--YSSTGPKSS 1185

Query: 263  YP 268
             P
Sbjct: 1186 EP 1187


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,946,199
Number of Sequences: 219361
Number of extensions: 1761829
Number of successful extensions: 3992
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3989
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)