Clone Information

BLAST Search Result

Clone Name	rbags19l04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	MPPB_ARATH (Q42290) Probable mitochondrial-processing peptidase ...	124	2e-28
2	MPPB_MOUSE (Q9CXT8) Mitochondrial-processing peptidase beta subu...	96	6e-20
3	MPPB_HUMAN (O75439) Mitochondrial-processing peptidase beta subu...	94	3e-19
4	MPPB_BOVIN (Q3SZ71) Mitochondrial-processing peptidase beta subu...	91	2e-18
5	MPPB_RAT (Q03346) Mitochondrial-processing peptidase beta subuni...	91	3e-18
6	MPPB_PONPY (Q5REK3) Mitochondrial-processing peptidase beta subu...	89	6e-18
7	MPPB_BLAEM (Q00302) Mitochondrial-processing peptidase beta subu...	89	8e-18
8	UQCR1_HUMAN (P31930) Ubiquinol-cytochrome-c reductase complex co...	86	5e-17
9	UQCR1_BOVIN (P31800) Ubiquinol-cytochrome-c reductase complex co...	84	3e-16
10	UQCR1_MOUSE (Q9CZ13) Ubiquinol-cytochrome-c reductase complex co...	82	7e-16
11	MPPB_SCHPO (Q9P7X1) Probable mitochondrial-processing peptidase ...	69	8e-12
12	MPPB_NEUCR (P11913) Mitochondrial-processing peptidase beta subu...	67	2e-11
13	MPPB_LENED (Q9Y8B5) Mitochondrial-processing peptidase beta subu...	66	7e-11
14	MPPB_YEAST (P10507) Mitochondrial-processing peptidase beta subu...	55	1e-07
15	UQCR1_YEAST (P07256) Ubiquinol-cytochrome-c reductase complex co...	49	1e-05
16	MPPA_SOLTU (P29677) Mitochondrial-processing peptidase alpha sub...	49	1e-05
17	UQCR1_EUGGR (P43264) Ubiquinol-cytochrome-c reductase complex co...	48	2e-05
18	MPPA_YEAST (P11914) Mitochondrial-processing peptidase alpha sub...	47	3e-05
19	MPPA_NEUCR (P23955) Mitochondrial-processing peptidase alpha sub...	45	1e-04
20	MPPA_RAT (P20069) Mitochondrial-processing peptidase alpha subun...	42	8e-04
21	MPPA_MOUSE (Q9DC61) Mitochondrial-processing peptidase alpha sub...	42	8e-04
22	MPPA2_ARATH (O04308) Probable mitochondrial-processing peptidase...	42	0.001
23	MPPA_PONPY (Q5R513) Mitochondrial-processing peptidase alpha sub...	41	0.002
24	MPPA_HUMAN (Q10713) Mitochondrial-processing peptidase alpha sub...	41	0.002
25	Y5738_STRCO (O86835) Hypothetical zinc protease SCO5738 (EC 3.4....	40	0.004
26	MPPA1_ARATH (Q9ZU25) Probable mitochondrial-processing peptidase...	40	0.005
27	YMT1_CAEEL (P98080) Hypothetical protein F56D2.1 in chromosome III	37	0.035
28	MPPA_BLAEM (P97997) Mitochondrial-processing peptidase alpha sub...	37	0.046
29	MPPA_SCHPO (O94745) Probable mitochondrial-processing peptidase ...	36	0.060
30	UQCR2_RAT (P32551) Ubiquinol-cytochrome-c reductase complex core...	31	2.5
31	SPG21_XENLA (Q5FVD6) Maspardin (Spastic paraplegia 21 autosomal ...	30	3.3
32	Y855_MYCLE (O32965) Hypothetical zinc protease ML0855 (EC 3.4.99.-)	30	4.3
33	TR95_MOUSE (Q6PGF3) Thyroid hormone receptor-associated protein ...	30	4.3
34	OR10A_DROME (Q9VYZ1) Putative odorant receptor 10a	30	5.6
35	YMEL1_RAT (Q925S8) ATP-dependent metalloprotease YME1L1 (EC 3.4....	30	5.6
36	SPG21_PONPY (Q5RES2) Maspardin (Spastic paraplegia 21 autosomal ...	30	5.6
37	SPG21_MOUSE (Q9CQC8) Maspardin (Spastic paraplegia 21 autosomal ...	30	5.6
38	SPG21_HUMAN (Q9NZD8) Maspardin (Spastic paraplegia 21 autosomal ...	30	5.6
39	SPG21_BOVIN (Q8MJJ1) Maspardin (Spastic paraplegia 21 autosomal ...	30	5.6
40	SPG21_RAT (Q5XIC4) Maspardin (Spastic paraplegia 21 autosomal re...	30	5.6
41	Y219_RICPR (O05945) Hypothetical zinc protease RP219 (EC 3.4.99.-)	29	7.4
42	SPG21_MACFA (Q4R5H6) Maspardin (Spastic paraplegia 21 autosomal ...	29	7.4
43	LAX3_ARATH (Q9CA25) Auxin transporter-like protein 3 (AUX1-like ...	29	7.4
44	KINH_GIBMO (Q86Z98) Kinesin heavy chain	29	9.6
45	Y293_RICCN (Q92IX7) Hypothetical zinc protease RC0293 (EC 3.4.99.-)	29	9.6
46	LAX3_MEDTR (Q9FEL6) Auxin transporter-like protein 3 (AUX1-like ...	29	9.6
47	Y2805_MYCBO (P0A5S9) Hypothetical zinc protease Mb2805c (EC 3.4....	29	9.6
48	Y2782_MYCTU (P0A5S8) Hypothetical zinc protease Rv2782c/MT2852 (...	29	9.6

>MPPB_ARATH (Q42290) Probable mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
          Length = 531

 Score =  124 bits (310), Expect = 2e-28
 Identities = 58/84 (69%), Positives = 72/84 (85%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           SS+ LH+DG++ + EDIGRQ L YGRRIP  ELFARIDAVD ST++RVAN++I+D+DIAI
Sbjct: 448 SSLLLHMDGTSPIAEDIGRQLLTYGRRIPTAELFARIDAVDASTVKRVANKYIYDKDIAI 507

Query: 359 AAMGPIKTLPDYNWFRRRTYMLRY 288
           +A+GPI+ LPDYN FRRRTY  RY
Sbjct: 508 SAIGPIQDLPDYNKFRRRTYWNRY 531

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>MPPB_MOUSE (Q9CXT8) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (P-52)
          Length = 489

 Score = 95.9 bits (237), Expect = 6e-20
 Identities = 46/73 (63%), Positives = 57/73 (78%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           +++ L LDGST + EDIGRQ L Y RRIPIPEL ARIDAVD  T+RRV  ++I D+  AI
Sbjct: 406 TNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVDAETVRRVCTKYIHDKSPAI 465

Query: 359 AAMGPIKTLPDYN 321
           AA+GPI+ LPD+N
Sbjct: 466 AALGPIERLPDFN 478

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>MPPB_HUMAN (O75439) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (P-52)
          Length = 489

 Score = 93.6 bits (231), Expect = 3e-19
 Identities = 47/83 (56%), Positives = 59/83 (71%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           +++ L LDGST + EDIGRQ L Y RRIPIPEL ARIDAV+  TIR V  ++I+++  AI
Sbjct: 406 TNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAI 465

Query: 359 AAMGPIKTLPDYNWFRRRTYMLR 291
           AA+GPIK LPD+   R     LR
Sbjct: 466 AAVGPIKQLPDFKQIRSNMCWLR 488

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>MPPB_BOVIN (Q3SZ71) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
          Length = 490

 Score = 90.9 bits (224), Expect = 2e-18
 Identities = 43/73 (58%), Positives = 56/73 (76%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           +++ L LDGST + EDIGRQ L Y RRIPIPEL ARIDAV+   IR V  ++I+D+  A+
Sbjct: 407 TNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAEIIREVCTKYIYDKSPAV 466

Query: 359 AAMGPIKTLPDYN 321
           AA+GPI+ LPD+N
Sbjct: 467 AAVGPIEQLPDFN 479

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>MPPB_RAT (Q03346) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (P-52)
          Length = 489

 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 43/73 (58%), Positives = 55/73 (75%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           +++ L LDGST + EDIGRQ L Y RRIPIPEL ARIDAVD   +R V  ++I+ +  AI
Sbjct: 406 TNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVDAEMVREVCTKYIYGKSPAI 465

Query: 359 AAMGPIKTLPDYN 321
           AA+GPI+ LPD+N
Sbjct: 466 AALGPIERLPDFN 478

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>MPPB_PONPY (Q5REK3) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
          Length = 489

 Score = 89.4 bits (220), Expect = 6e-18
 Identities = 43/72 (59%), Positives = 56/72 (77%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           +++ L LDGST + EDIGRQ L Y RRIPIPEL ARIDAV+  TIR V  ++I+++  AI
Sbjct: 406 TNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAI 465

Query: 359 AAMGPIKTLPDY 324
           AA+GPI+ LPD+
Sbjct: 466 AAVGPIEQLPDF 477

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>MPPB_BLAEM (Q00302) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
           (BeMPP1)
          Length = 465

 Score = 89.0 bits (219), Expect = 8e-18
 Identities = 43/84 (51%), Positives = 59/84 (70%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           +S+ L LDG+T V E+IGRQ L YGRR+   E+   +DAV    ++RVAN FI+D+D+AI
Sbjct: 382 TSLLLALDGTTPVAEEIGRQMLAYGRRLSPFEIDRLVDAVTVEDVKRVANEFIYDRDLAI 441

Query: 359 AAMGPIKTLPDYNWFRRRTYMLRY 288
            A+GP++ LPDYN  R    +LRY
Sbjct: 442 VAVGPVECLPDYNRIRSAMNLLRY 465

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>UQCR1_HUMAN (P31930) Ubiquinol-cytochrome-c reductase complex core protein I,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 480

 Score = 86.3 bits (212), Expect = 5e-17
 Identities = 41/79 (51%), Positives = 54/79 (68%)
 Frame = -2

Query: 524 HLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAIAAMGP 345
           HLDG+T V EDIGR  L YGRRIP+ E  +RI  VD S +R + +++I+DQ  A+A  GP
Sbjct: 402 HLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDASVVREICSKYIYDQCPAVAGYGP 461

Query: 344 IKTLPDYNWFRRRTYMLRY 288
           I+ LPDYN  R   + LR+
Sbjct: 462 IEQLPDYNRIRSGMFWLRF 480

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>UQCR1_BOVIN (P31800) Ubiquinol-cytochrome-c reductase complex core protein I,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 480

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 40/79 (50%), Positives = 52/79 (65%)
 Frame = -2

Query: 524 HLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAIAAMGP 345
           HLDG+T V EDIGR  L YGRRIP+ E  +RI  VD   +R V +++ +DQ  A+A  GP
Sbjct: 402 HLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGP 461

Query: 344 IKTLPDYNWFRRRTYMLRY 288
           I+ LPDYN  R   + LR+
Sbjct: 462 IEQLPDYNRIRSGMFWLRF 480

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>UQCR1_MOUSE (Q9CZ13) Ubiquinol-cytochrome-c reductase complex core protein I,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 480

 Score = 82.4 bits (202), Expect = 7e-16
 Identities = 39/79 (49%), Positives = 52/79 (65%)
 Frame = -2

Query: 524 HLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAIAAMGP 345
           HLDG+T V EDIGR  L YGRRIP+ E  +RI  VD   +R + +++ +DQ  A+A  GP
Sbjct: 402 HLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIQEVDAQMLRDICSKYFYDQCPAVAGYGP 461

Query: 344 IKTLPDYNWFRRRTYMLRY 288
           I+ LPDYN  R   + LR+
Sbjct: 462 IEQLPDYNRIRSGMFWLRF 480

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>MPPB_SCHPO (Q9P7X1) Probable mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (PEP)
          Length = 457

 Score = 68.9 bits (167), Expect = 8e-12
 Identities = 37/84 (44%), Positives = 53/84 (63%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           +S+ L LD +TA+ EDIGRQ L  GRR+   E+  RI  +    + RVA+  I+D+DIA+
Sbjct: 374 ASLLLSLDSTTAIAEDIGRQLLTTGRRMSPQEVDLRIGQITEKDVARVASEMIWDKDIAV 433

Query: 359 AAMGPIKTLPDYNWFRRRTYMLRY 288
           +A+G I+ L DYN  R    M R+
Sbjct: 434 SAVGSIEGLLDYNRIRSSISMNRW 457

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>MPPB_NEUCR (P11913) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
           (Ubiquinol-cytochrome-c reductase complex core protein
           I) (EC 1.10.2.2)
          Length = 476

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 38/72 (52%), Positives = 49/72 (68%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           +SI L LDG+TAV EDIGRQ +  GRR+   E+   IDAV    +   AN+ I+DQDIAI
Sbjct: 393 ASILLSLDGTTAVAEDIGRQIVTTGRRMSPAEIERIIDAVSAKDVMDFANKKIWDQDIAI 452

Query: 359 AAMGPIKTLPDY 324
           +A+G I+ L DY
Sbjct: 453 SAVGSIEGLFDY 464

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>MPPB_LENED (Q9Y8B5) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
          Length = 466

 Score = 65.9 bits (159), Expect = 7e-11
 Identities = 34/84 (40%), Positives = 51/84 (60%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           + + L LDG+TAV EDIGRQ +  G+R+   ++   +DAV    I+RVA ++++D+D A+
Sbjct: 383 AGLLLSLDGTTAVAEDIGRQIVTSGKRMTPAQIENAVDAVSVDDIKRVAQKYLWDKDFAL 442

Query: 359 AAMGPIKTLPDYNWFRRRTYMLRY 288
           AA G I  L DY   R     + Y
Sbjct: 443 AAFGNIDGLKDYGRIRNDMSSMLY 466

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>MPPB_YEAST (P10507) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (PEP)
          Length = 462

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 26/78 (33%), Positives = 49/78 (62%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           +++ L LDGSTA+VEDIGRQ +  G+R+   E+F ++D +    I   AN  + ++ +++
Sbjct: 382 AALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPVSM 441

Query: 359 AAMGPIKTLPDYNWFRRR 306
            A+G   T+P+ ++   +
Sbjct: 442 VALGNTSTVPNVSYIEEK 459

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>UQCR1_YEAST (P07256) Ubiquinol-cytochrome-c reductase complex core protein I,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 457

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 25/68 (36%), Positives = 40/68 (58%)
 Frame = -2

Query: 491 IGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAIAAMGPIKTLPDYNWFR 312
           +G + LI G ++ + E F +IDA+    ++  A + ++DQDIAIA  G I+ L DY   R
Sbjct: 390 LGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDYMRIR 449

Query: 311 RRTYMLRY 288
               M+R+
Sbjct: 450 SDMSMMRW 457

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>MPPA_SOLTU (P29677) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
           (Ubiquinol-cytochrome-c reductase subunit II) (EC
           1.10.2.2)
          Length = 504

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 26/73 (35%), Positives = 38/73 (52%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           S+I ++L+      EDIGRQ L YG R P+      IDAV    I  V  + I    + +
Sbjct: 424 SAILMNLESRMVASEDIGRQLLTYGERNPVEHFLKAIDAVSAKDIASVVQKLI-SSPLTM 482

Query: 359 AAMGPIKTLPDYN 321
           A+ G + +LP Y+
Sbjct: 483 ASYGDVLSLPSYD 495

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>UQCR1_EUGGR (P43264) Ubiquinol-cytochrome-c reductase complex core protein I,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 494

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = -2

Query: 527 LHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQ 372
           L LDG+T + +DIGRQ L +G R+P+   F ++DA+    + RV  R +  Q
Sbjct: 397 LQLDGTTNIADDIGRQVLSFGARVPLASFFEQLDAISREDLIRVGPRVLLRQ 448

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>MPPA_YEAST (P11914) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
          Length = 482

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 24/64 (37%), Positives = 41/64 (64%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           SS+ ++L+     +ED+GRQ L++GR+IP+ E+ ++I+ + P  I RVA   IF  ++  
Sbjct: 376 SSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVA-EMIFTGNVNN 434

Query: 359 AAMG 348
           A  G
Sbjct: 435 AGNG 438

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>MPPA_NEUCR (P23955) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
          Length = 577

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 20/53 (37%), Positives = 35/53 (66%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFI 381
           SS+ ++L+     +ED+GRQ  ++GR+IP+ E+  RI+ +    +RRVA R +
Sbjct: 477 SSLLMNLESRMVELEDLGRQVQVHGRKIPVREMTRRINELTVKDLRRVAKRVV 529

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>MPPA_RAT (P20069) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
           (P-55)
          Length = 524

 Score = 42.4 bits (98), Expect = 8e-04
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQL-IYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIA 363
           S + ++L+    + ED+GRQ L  + R++P  EL   I  V P  I+RVA++ +  +  A
Sbjct: 432 SMLMMNLESRPVIFEDVGRQVLATHSRKLP-HELCTLIRNVKPEDIKRVASKMLRGKP-A 489

Query: 362 IAAMGPIKTLPDY 324
           +AA+G +  LP Y
Sbjct: 490 VAALGDLTDLPTY 502

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>MPPA_MOUSE (Q9DC61) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
           (P-55)
          Length = 524

 Score = 42.4 bits (98), Expect = 8e-04
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQL-IYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIA 363
           S + ++L+    + ED+GRQ L  + R++P  EL   I  V P  I+RVA++ +  +  A
Sbjct: 432 SMLMMNLESRPVIFEDVGRQVLATHSRKLP-HELCTLIRNVKPEDIKRVASKMLRGKP-A 489

Query: 362 IAAMGPIKTLPDY 324
           +AA+G +  LP Y
Sbjct: 490 VAALGDLTDLPTY 502

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>MPPA2_ARATH (O04308) Probable mitochondrial-processing peptidase alpha subunit|
           2, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 2)
          Length = 499

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 21/78 (26%), Positives = 39/78 (50%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           S+I ++L+      EDIGRQ L YG R P+ +    +D +    I    ++ +  + + +
Sbjct: 421 SAILMNLESRMIAAEDIGRQILTYGERKPVDQFLKTVDQLTLKDIADFTSK-VITKPLTM 479

Query: 359 AAMGPIKTLPDYNWFRRR 306
           A  G +  +P Y+   +R
Sbjct: 480 ATFGDVLNVPSYDSVSKR 497

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>MPPA_PONPY (Q5R513) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
          Length = 525

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 24/72 (33%), Positives = 39/72 (54%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           S + ++L+    + ED+GRQ L    R    EL   I  V P  ++RVA++ +  +  A+
Sbjct: 433 SMLMMNLESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVKPEDVKRVASKMLRGKP-AV 491

Query: 359 AAMGPIKTLPDY 324
           AA+G +  LP Y
Sbjct: 492 AALGDLTDLPTY 503

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>MPPA_HUMAN (Q10713) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
           (P-55)
          Length = 525

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 24/72 (33%), Positives = 39/72 (54%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           S + ++L+    + ED+GRQ L    R    EL   I  V P  ++RVA++ +  +  A+
Sbjct: 433 SMLMMNLESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVKPEDVKRVASKMLRGKP-AV 491

Query: 359 AAMGPIKTLPDY 324
           AA+G +  LP Y
Sbjct: 492 AALGDLTDLPTY 503

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>Y5738_STRCO (O86835) Hypothetical zinc protease SCO5738 (EC 3.4.99.-)|
          Length = 459

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 20/66 (30%), Positives = 41/66 (62%)
 Frame = -2

Query: 536 SIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAIA 357
           S  L L+ + A++  IG+ +L +G ++ + ++ ARI +V P  +R VA R +  +  +++
Sbjct: 383 STVLGLEDTGALMNRIGKSELCWGEQMSVDDMLARIASVTPDDVRAVA-RDVLGRRPSLS 441

Query: 356 AMGPIK 339
            +GP+K
Sbjct: 442 VIGPLK 447

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>MPPA1_ARATH (Q9ZU25) Probable mitochondrial-processing peptidase alpha subunit|
           1, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 1)
          Length = 503

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVAN--RFIFDQDI 366
           S++ ++L+      EDIGRQ L YG R P+ +    + +VD  T++ +A+    +  + +
Sbjct: 425 SAVLMNLESRMIAAEDIGRQILTYGERKPVDQF---LKSVDQLTLKDIADFTSKVISKPL 481

Query: 365 AIAAMGPIKTLPDYN 321
            + + G +  +P Y+
Sbjct: 482 TMGSFGDVLAVPSYD 496

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>YMT1_CAEEL (P98080) Hypothetical protein F56D2.1 in chromosome III|
          Length = 471

 Score = 37.0 bits (84), Expect = 0.035
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -2

Query: 482 QQLIY-GRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAIAAMGPIKTLPDY 324
           ++L+Y G    + EL A+I  VD   +R   +R ++D+D+A   +G  +  P+Y
Sbjct: 406 KELLYTGNLRQLSELEAQIQKVDAGAVREAISRHVYDRDLAAVGVGRTEAFPNY 459

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>MPPA_BLAEM (P97997) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
          Length = 474

 Score = 36.6 bits (83), Expect = 0.046
 Identities = 23/71 (32%), Positives = 33/71 (46%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           SS+ ++L+     VEDIGRQ L   +R+   EL   I AV    + RVA   +      +
Sbjct: 375 SSLLMNLESQVITVEDIGRQVLAQNQRLEPLELVNNISAVTRDDLVRVAEALVAKPPTMV 434

Query: 359 AAMGPIKTLPD 327
           A    +  L D
Sbjct: 435 AVGEDLTKLTD 445

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>MPPA_SCHPO (O94745) Probable mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
          Length = 494

 Score = 36.2 bits (82), Expect = 0.060
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQ-QLIYGRRIPIPELFARIDAVDPSTIRRVANRFI 381
           SS+ ++L+     +ED+GRQ Q   G  I   E+  +IDA+ PS + RVA R +
Sbjct: 402 SSLLMNLESRMISLEDLGRQIQTQNGLYITPKEMIEKIDALTPSDLSRVARRVL 455

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>UQCR2_RAT (P32551) Ubiquinol-cytochrome-c reductase complex core protein 2,|
           mitochondrial precursor (EC 1.10.2.2) (Complex III
           subunit II)
          Length = 452

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -2

Query: 527 LHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFI 381
           + ++ S   + +IG Q L  G  +P P +  +IDAV  + + + A +F+
Sbjct: 383 MSVETSEGFLSEIGSQALATGSYMPPPTVLQQIDAVADADVVKAAKKFV 431

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>SPG21_XENLA (Q5FVD6) Maspardin (Spastic paraplegia 21 autosomal recessive Mast|
           syndrome protein homolog)
          Length = 310

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 353 MGPIKTLPDYNWFRRRTYMLRY*IQPAVYHVYSL 252
           MG IK  PDYNWFR    + R  +      V+SL
Sbjct: 1   MGAIKISPDYNWFRSTVPLKRIIVDDDDSKVWSL 34

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>Y855_MYCLE (O32965) Hypothetical zinc protease ML0855 (EC 3.4.99.-)|
          Length = 445

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = -2

Query: 533 IQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAIAA 354
           I L L+ S + +  +GR +L YG+   I     +ID V    +  +A++ + ++    A 
Sbjct: 368 IILGLEDSNSWMSRLGRSELNYGKYRGIEHTLQQIDEVTVEQVNALAHQ-LLNKRYGAAV 426

Query: 353 MGPI---KTLP 330
           +GP    KTLP
Sbjct: 427 LGPYASKKTLP 437

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>TR95_MOUSE (Q6PGF3) Thyroid hormone receptor-associated protein complex 95 kDa|
           component (Trap95) (Thyroid hormone receptor-associated
           protein 5) (Vitamin D3 receptor-interacting protein
           complex component DRIP92)
          Length = 828

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 188 YVPKWRNFLSLRFPCPCLPFANPQSCQ*W*ANSTDVFYDDDELSRYFSI 42
           YV +W  +    + CP LP A   SC+   A +TD+  DD +L+    I
Sbjct: 5   YVCEWEKWAKSTY-CPSLPLACAWSCRNLTAFTTDLRNDDQDLTHMIHI 52

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>OR10A_DROME (Q9VYZ1) Putative odorant receptor 10a|
          Length = 406

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 23/56 (41%), Positives = 28/56 (50%)
 Frame = +2

Query: 215 YTDAKTSNHLAFADCKHGTLLVESSNGACRSCV*TSCSLEES*LVPWQRWQYPGQR 382
           YT A  S  L +  C  GTL+ ESS G CR+    SC        PWQ ++ P QR
Sbjct: 318 YTVAALSQLLVY--CYGGTLVAESSTGLCRAMF--SC--------PWQLFK-PKQR 360

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>YMEL1_RAT (Q925S8) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)|
           (YME1-like protein 1) (ATP-dependent metalloprotease
           FtsH1) (Meg-4)
          Length = 715

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = +3

Query: 174 PLRHIICAWMWPYNILMPKQAIILPLQTVNMVHCWLNLVTEHVGPASEPVVVWKSLNWSH 353
           PL H+I A+  P NI +       P Q         + V EH  P+SEPV+  + L  S 
Sbjct: 15  PLSHLINAFHSPKNISVSVNTSASPKQH-------RDTVAEHEAPSSEPVLNLRDLGLSE 67

Query: 354 GSDGNI 371
              G I
Sbjct: 68  LKIGQI 73

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>SPG21_PONPY (Q5RES2) Maspardin (Spastic paraplegia 21 autosomal recessive Mast|
           syndrome protein homolog)
          Length = 308

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -2

Query: 353 MGPIKTLPDYNWFR 312
           MG IK  PDYNWFR
Sbjct: 1   MGEIKVSPDYNWFR 14

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>SPG21_MOUSE (Q9CQC8) Maspardin (Spastic paraplegia 21 autosomal recessive Mast|
           syndrome protein homolog) (Acid cluster protein 33)
          Length = 308

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -2

Query: 353 MGPIKTLPDYNWFR 312
           MG IK  PDYNWFR
Sbjct: 1   MGEIKVSPDYNWFR 14

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>SPG21_HUMAN (Q9NZD8) Maspardin (Spastic paraplegia 21 autosomal recessive Mast|
           syndrome protein) (Acid cluster protein 33)
          Length = 308

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -2

Query: 353 MGPIKTLPDYNWFR 312
           MG IK  PDYNWFR
Sbjct: 1   MGEIKVSPDYNWFR 14

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>SPG21_BOVIN (Q8MJJ1) Maspardin (Spastic paraplegia 21 autosomal recessive Mast|
           syndrome protein homolog)
          Length = 308

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -2

Query: 353 MGPIKTLPDYNWFR 312
           MG IK  PDYNWFR
Sbjct: 1   MGEIKVSPDYNWFR 14

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>SPG21_RAT (Q5XIC4) Maspardin (Spastic paraplegia 21 autosomal recessive Mast|
           syndrome protein homolog)
          Length = 261

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -2

Query: 353 MGPIKTLPDYNWFR 312
           MG IK  PDYNWFR
Sbjct: 1   MGEIKVSPDYNWFR 14

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>Y219_RICPR (O05945) Hypothetical zinc protease RP219 (EC 3.4.99.-)|
          Length = 412

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           S++Q+  + +T   E+IG+   ++G+ I   E+   I  +    I   AN+ IF     +
Sbjct: 343 SNLQMAQEQNTYKSEEIGKNYSVFGKYILPEEIIEIITNIRADDIINTANK-IFSGTTTL 401

Query: 359 AAMGP 345
           A +GP
Sbjct: 402 AIIGP 406

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>SPG21_MACFA (Q4R5H6) Maspardin (Spastic paraplegia 21 autosomal recessive Mast|
           syndrome protein homolog)
          Length = 308

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 353 MGPIKTLPDYNWFR 312
           MG +K  PDYNWFR
Sbjct: 1   MGEVKVSPDYNWFR 14

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>LAX3_ARATH (Q9CA25) Auxin transporter-like protein 3 (AUX1-like protein 3)|
          Length = 470

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -2

Query: 176 WRNFLSLRFPCPCLPFANPQSCQ*W*ANSTDVFYDDDELSRYFSIFVFGYCC 21
           WRN L L F C  L F +        A +++++Y +D+L +    ++FG CC
Sbjct: 132 WRN-LGLIFNCTFLLFGSVIQLI---ACASNIYYINDKLDKRTWTYIFGACC 179

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>KINH_GIBMO (Q86Z98) Kinesin heavy chain|
          Length = 931

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +2

Query: 143 GKENEDSK--NSSTSAHNMCVDVAL*YTDAKTSNHLAFADCKHGTLLVESSNGACRSCV* 316
           G+  E++K  N S SA  M ++     TD K+S H+ + D K   +L ES  G  R+ + 
Sbjct: 248 GQTLEEAKKINKSLSALGMVINAL---TDGKSS-HIPYRDSKLTRILQESLGGNSRTTLI 303

Query: 317 TSCS 328
            +CS
Sbjct: 304 INCS 307

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>Y293_RICCN (Q92IX7) Hypothetical zinc protease RC0293 (EC 3.4.99.-)|
          Length = 412

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = -2

Query: 539 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 360
           S++Q+  + +T   E+IG+   ++G+ I   E+   I ++    I   AN+ IF      
Sbjct: 343 SNLQMAQEKNTYKSEEIGKNYSVFGQYISPEEIMEIIMSIKADDIINTANK-IFSGTTTS 401

Query: 359 AAMGP 345
           A +GP
Sbjct: 402 AIIGP 406

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>LAX3_MEDTR (Q9FEL6) Auxin transporter-like protein 3 (AUX1-like protein 3)|
           (MtLAX3)
          Length = 465

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 176 WRNFLSLRFPCPCLPFANPQSCQ*W*ANSTDVFYDDDELSRYFSIFVFGYCC 21
           WRN L L F C  L F +        A +++++Y +D L +    ++FG CC
Sbjct: 127 WRN-LGLFFNCTFLLFGSVIQLI---ACASNIYYINDHLDKRTWTYIFGACC 174

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>Y2805_MYCBO (P0A5S9) Hypothetical zinc protease Mb2805c (EC 3.4.99.-)|
          Length = 438

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -2

Query: 527 LHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAIAAMG 348
           L L+ S++ +  +GR +L YG+   I     +I+ V    +  VA R +  +    A +G
Sbjct: 363 LGLEDSSSRMSRLGRSELNYGKHRSIEHTLRQIEQVTVEEVNAVA-RHLLSRRYGAAVLG 421

Query: 347 P 345
           P
Sbjct: 422 P 422

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>Y2782_MYCTU (P0A5S8) Hypothetical zinc protease Rv2782c/MT2852 (EC 3.4.99.-)|
          Length = 438

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -2

Query: 527 LHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAIAAMG 348
           L L+ S++ +  +GR +L YG+   I     +I+ V    +  VA R +  +    A +G
Sbjct: 363 LGLEDSSSRMSRLGRSELNYGKHRSIEHTLRQIEQVTVEEVNAVA-RHLLSRRYGAAVLG 421

Query: 347 P 345
           P
Sbjct: 422 P 422


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,276,513
Number of Sequences: 219361
Number of extensions: 1753998
Number of successful extensions: 4756
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 4602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4749
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result