ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19l01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550449.1| Oryza sativa (japonica cultivar-group), mRNA 117 4e-23
2dbj|AK099594.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 4e-23
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
4dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
5gb|AF149806.1| Oryza sativa hypothetical protein, fertilin alpha... 80 1e-11
6gb|AY105314.1| Zea mays PCO096894 mRNA sequence 74 6e-10
7gb|BT019188.1| Zea mays clone Contig859.F mRNA sequence 66 1e-07
8gb|AY458630.1| Uncultured bacterium 106 clone EBAC750-01B07 geno... 44 0.53
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
10gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
11emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb... 42 2.1
12ref|XM_516189.1| PREDICTED: Pan troglodytes ankyrin repeat and S... 40 8.2
13gb|BC014528.2| Homo sapiens ankyrin repeat and SOCS box-containi... 40 8.2
14gb|AE006429.1| Lactococcus lactis subsp. lactis IL1403 section 1... 40 8.2
15ref|NM_001040445.1| Homo sapiens ankyrin repeat and SOCS box-con... 40 8.2
16emb|AL139042.15| Human DNA sequence from clone RP11-459O1 on chr... 40 8.2
17gb|AC010653.10| Homo sapiens chromosome 16 clone RP11-417N10, co... 40 8.2
18gb|AC055878.5| Homo sapiens chromosome 11, clone RP11-34N19, com... 40 8.2
19gb|AC012312.9| Homo sapiens chromosome 5 clone CTC-558O19, compl... 40 8.2
20gb|AC009097.9| Homo sapiens chromosome 16 clone RP11-432I5, comp... 40 8.2
21gb|AF156777.1|AF156777 Homo sapiens ASB-1 protein mRNA, complete... 40 8.2
22gb|AC119793.3| Homo sapiens 12 BAC RP11-390F17 (Roswell Park Can... 40 8.2
23gb|AC016999.8| Homo sapiens BAC clone RP11-40B20 from 2, complet... 40 8.2
24emb|AL805965.19| Mouse DNA sequence from clone RP23-193K10 on ch... 40 8.2
25gb|AC019013.2|AC019013 Genomic Sequence For Arabidopsis thaliana... 40 8.2
26emb|CT573052.2| Medicago truncatula chromosome 5 clone mth2-60f2... 40 8.2
27gb|AC006538.1|AC006538 Homo sapiens chromosome 19, BAC 41195 (CI... 40 8.2
28gb|AC171274.2| Gallus gallus BAC clone CH261-121C13 from chromos... 40 8.2 
>ref|XM_550449.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2472

 Score =  117 bits (59), Expect = 4e-23
 Identities = 134/159 (84%)
 Strand = Plus / Minus

                                                                        
Query: 446  ggaaggatcaaatgatgcctctacatgcaactgtgacttggctggattcacctctatggg 505
            ||||||||| || || ||||||||||||| |   |||||| ||||||| || ||||  ||
Sbjct: 2201 ggaaggatcgaaggacgcctctacatgcatcaccgacttgcctggatttacttctacagg 2142

                                                                        
Query: 506  cttgctaaggagctggactccttgtttccagtatcggctatctggtccagtgcttagcac 565
            |||||||| |||||| ||||||||||||||||||||| |||||||||| ||  ||| |||
Sbjct: 2141 cttgctaaagagctgtactccttgtttccagtatcggttatctggtccggttgttaacac 2082

                                                   
Query: 566  gatggagtttttctcatcaagtacccagtcaatccaaac 604
             | ||| ||| |||||||||| ||||| |||||||||||
Sbjct: 2081 aacggattttctctcatcaagaacccaatcaatccaaac 2043
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>dbj|AK099594.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044A06, full
            insert sequence
          Length = 2469

 Score =  117 bits (59), Expect = 4e-23
 Identities = 134/159 (84%)
 Strand = Plus / Minus

                                                                        
Query: 446  ggaaggatcaaatgatgcctctacatgcaactgtgacttggctggattcacctctatggg 505
            ||||||||| || || ||||||||||||| |   |||||| ||||||| || ||||  ||
Sbjct: 2197 ggaaggatcgaaggacgcctctacatgcatcaccgacttgcctggatttacttctacagg 2138

                                                                        
Query: 506  cttgctaaggagctggactccttgtttccagtatcggctatctggtccagtgcttagcac 565
            |||||||| |||||| ||||||||||||||||||||| |||||||||| ||  ||| |||
Sbjct: 2137 cttgctaaagagctgtactccttgtttccagtatcggttatctggtccggttgttaacac 2078

                                                   
Query: 566  gatggagtttttctcatcaagtacccagtcaatccaaac 604
             | ||| ||| |||||||||| ||||| |||||||||||
Sbjct: 2077 aacggattttctctcatcaagaacccaatcaatccaaac 2039
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                          
Query: 446    ggaaggatcaaatgatgcctctacatgcaactgtgacttggctggattcacctctatggg 505
              ||||||||| || || ||||||||||||| |   |||||| ||||||| || ||||  ||
Sbjct: 381394 ggaaggatcgaaggacgcctctacatgcatcaccgacttgcctggatttacttctacagg 381335

                                                          
Query: 506    cttgctaaggagctggactccttgtttccagtatcggctatctg 549
              |||||||| |||||| ||||||||||||||||||||| ||||||
Sbjct: 381334 cttgctaaagagctgtactccttgtttccagtatcggttatctg 381291



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 577    tctcatcaagtacccagtcaatccaaac 604
              |||||||||| ||||| |||||||||||
Sbjct: 381175 tctcatcaagaacccaatcaatccaaac 381148
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>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0644B06
          Length = 194509

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                         
Query: 446   ggaaggatcaaatgatgcctctacatgcaactgtgacttggctggattcacctctatggg 505
             ||||||||| || || ||||||||||||| |   |||||| ||||||| || ||||  ||
Sbjct: 91347 ggaaggatcgaaggacgcctctacatgcatcaccgacttgcctggatttacttctacagg 91288

                                                         
Query: 506   cttgctaaggagctggactccttgtttccagtatcggctatctg 549
             |||||||| |||||| ||||||||||||||||||||| ||||||
Sbjct: 91287 cttgctaaagagctgtactccttgtttccagtatcggttatctg 91244



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 577   tctcatcaagtacccagtcaatccaaac 604
             |||||||||| ||||| |||||||||||
Sbjct: 91128 tctcatcaagaacccaatcaatccaaac 91101
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>gb|AF149806.1| Oryza sativa hypothetical protein, fertilin alpha subunit, membrane
            protein homolog, and Myb-related protein genes, complete
            cds; and unknown gene
          Length = 33178

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 88/104 (84%)
 Strand = Plus / Minus

                                                                        
Query: 446  ggaaggatcaaatgatgcctctacatgcaactgtgacttggctggattcacctctatggg 505
            ||||||||| || || ||||||||||||| |   |||||| ||||||| || ||||  ||
Sbjct: 7223 ggaaggatcgaaggacgcctctacatgcatcaccgacttgcctggatttacttctacagg 7164

                                                        
Query: 506  cttgctaaggagctggactccttgtttccagtatcggctatctg 549
            ||||| || |||||| ||||||||||||||||||||| ||||||
Sbjct: 7163 cttgccaaagagctgtactccttgtttccagtatcggttatctg 7120



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 577  tctcatcaagtacccagtcaatccaaac 604
            |||||||||| ||||| |||||||||||
Sbjct: 7004 tctcatcaagaacccaatcaatccaaac 6977
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>gb|AY105314.1| Zea mays PCO096894 mRNA sequence
          Length = 961

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 82/97 (84%)
 Strand = Plus / Minus

                                                                       
Query: 508 tgctaaggagctggactccttgtttccagtatcggctatctggtccagtgcttagcacga 567
           ||||||| ||||| || ||||| |||||||||| ||| ||||| || ||||||| ||| |
Sbjct: 587 tgctaagcagctgcaccccttgcttccagtatctgctctctggcccggtgcttatcacta 528

                                                
Query: 568 tggagtttttctcatcaagtacccagtcaatccaaac 604
           |||| |||| ||  |||||||||||||| ||||||||
Sbjct: 527 tggaattttccttgtcaagtacccagtcgatccaaac 491
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>gb|BT019188.1| Zea mays clone Contig859.F mRNA sequence
          Length = 1631

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                        
Query: 508  tgctaaggagctggactccttgtttccagtatcggctatctggtccagtgcttagcacga 567
            ||||||| |||||  | ||||| |||||||||| ||| ||||| || ||||||| ||| |
Sbjct: 1269 tgctaagcagctgccccccttgcttccagtatctgctctctggcccggtgcttatcacta 1210

                                                 
Query: 568  tggagtttttctcatcaagtacccagtcaatccaaac 604
            |||| |||| ||  |||||||||||||| ||||||||
Sbjct: 1209 tggaattttccttgtcaagtacccagtcgatccaaac 1173
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>gb|AY458630.1| Uncultured bacterium 106 clone EBAC750-01B07 genomic sequence
          Length = 43887

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 385   acgaggttccatgatgcaactt 406
             ||||||||||||||||||||||
Sbjct: 12786 acgaggttccatgatgcaactt 12765
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 11     ttaaacttgctcaaatactgc 31
              |||||||||||||||||||||
Sbjct: 530673 ttaaacttgctcaaatactgc 530653
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 11     ttaaacttgctcaaatactgc 31
              |||||||||||||||||||||
Sbjct: 530673 ttaaacttgctcaaatactgc 530653
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>emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb0037D03 of library OSJNBb from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 130544

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 11    ttaaacttgctcaaatactgc 31
             |||||||||||||||||||||
Sbjct: 39639 ttaaacttgctcaaatactgc 39659
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>ref|XM_516189.1| PREDICTED: Pan troglodytes ankyrin repeat and SOCS box-containing
            protein 1 (LOC460059), mRNA
          Length = 2286

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 384  cacgaggttccatgatgcaacttacgtc 411
            ||||||| ||||||||||| ||||||||
Sbjct: 1392 cacgaggctccatgatgcagcttacgtc 1419
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>gb|BC014528.2| Homo sapiens ankyrin repeat and SOCS box-containing 1, mRNA (cDNA
           clone MGC:11165 IMAGE:3842384), complete cds
          Length = 1331

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 384 cacgaggttccatgatgcaacttacgtc 411
           ||||||| ||||||||||| ||||||||
Sbjct: 200 cacgaggctccatgatgcagcttacgtc 227
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>gb|AE006429.1| Lactococcus lactis subsp. lactis IL1403 section 191 of 218 of the
            complete genome
          Length = 13456

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 30   gcaaatagttaaatacaacc 49
            ||||||||||||||||||||
Sbjct: 9908 gcaaatagttaaatacaacc 9927
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>ref|NM_001040445.1| Homo sapiens ankyrin repeat and SOCS box-containing 1 (ASB1), mRNA
          Length = 6833

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 384 cacgaggttccatgatgcaacttacgtc 411
           ||||||| ||||||||||| ||||||||
Sbjct: 200 cacgaggctccatgatgcagcttacgtc 227
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>emb|AL139042.15| Human DNA sequence from clone RP11-459O1 on chromosome 6 Contains an
             actin beta (ACTB) pseudogene and part of a novel gene,
             complete sequence
          Length = 107745

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 433   tgatgtcaccagaggaagga 452
             ||||||||||||||||||||
Sbjct: 19713 tgatgtcaccagaggaagga 19732
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>gb|AC010653.10| Homo sapiens chromosome 16 clone RP11-417N10, complete sequence
          Length = 184515

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 21     tcaaatactgcaaatagttaaata 44
              ||||||||||| ||||||||||||
Sbjct: 144938 tcaaatactgctaatagttaaata 144915
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>gb|AC055878.5| Homo sapiens chromosome 11, clone RP11-34N19, complete sequence
          Length = 183763

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   aattcccagatacacacatc 131
             ||||||||||||||||||||
Sbjct: 42374 aattcccagatacacacatc 42393
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>gb|AC012312.9| Homo sapiens chromosome 5 clone CTC-558O19, complete sequence
          Length = 181226

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     aatagttaaatacaacccca 52
              ||||||||||||||||||||
Sbjct: 117087 aatagttaaatacaacccca 117106
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>gb|AC009097.9| Homo sapiens chromosome 16 clone RP11-432I5, complete sequence
          Length = 199471

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 21     tcaaatactgcaaatagttaaata 44
              ||||||||||| ||||||||||||
Sbjct: 178389 tcaaatactgctaatagttaaata 178412
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>gb|AF156777.1|AF156777 Homo sapiens ASB-1 protein mRNA, complete cds
          Length = 1008

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 384 cacgaggttccatgatgcaacttacgtc 411
           ||||||| ||||||||||| ||||||||
Sbjct: 114 cacgaggctccatgatgcagcttacgtc 141
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>gb|AC119793.3| Homo sapiens 12 BAC RP11-390F17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 73625

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   atctctgaaaatttaaacat 253
             ||||||||||||||||||||
Sbjct: 67320 atctctgaaaatttaaacat 67339
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>gb|AC016999.8| Homo sapiens BAC clone RP11-40B20 from 2, complete sequence
          Length = 93778

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 384   cacgaggttccatgatgcaacttacgtc 411
             ||||||| ||||||||||| ||||||||
Sbjct: 24929 cacgaggctccatgatgcagcttacgtc 24956
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>emb|AL805965.19| Mouse DNA sequence from clone RP23-193K10 on chromosome 2, complete
              sequence
          Length = 205790

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 421    aggagcaaaatgtgatgtca 440
              ||||||||||||||||||||
Sbjct: 138590 aggagcaaaatgtgatgtca 138609
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>gb|AC019013.2|AC019013 Genomic Sequence For Arabidopsis thaliana, Clone T5E15, Chromosome V,
             complete sequence
          Length = 114056

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   gaataaccatgatgggcatt 159
             ||||||||||||||||||||
Sbjct: 36698 gaataaccatgatgggcatt 36679
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>emb|CT573052.2| Medicago truncatula chromosome 5 clone mth2-60f21, COMPLETE SEQUENCE
          Length = 131869

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 59    atcacctcccctctaccatcatatttcc 86
             |||| |||||||||| ||||||||||||
Sbjct: 42467 atcatctcccctctatcatcatatttcc 42440
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>gb|AC006538.1|AC006538 Homo sapiens chromosome 19, BAC 41195 (CIT-B-31c16), complete sequence
          Length = 177540

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 481   acttggctggattcacctct 500
             ||||||||||||||||||||
Sbjct: 47469 acttggctggattcacctct 47488
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>gb|AC171274.2| Gallus gallus BAC clone CH261-121C13 from chromosome ul, complete
             sequence
          Length = 218983

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    aaatactgcaaatagttaaa 42
             ||||||||||||||||||||
Sbjct: 48982 aaatactgcaaatagttaaa 48963


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,568,987
Number of Sequences: 3902068
Number of extensions: 5568987
Number of successful extensions: 97141
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96944
Number of HSP's gapped (non-prelim): 197
length of query: 604
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 581
effective length of database: 17,143,297,704
effective search space: 9960255966024
effective search space used: 9960255966024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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