ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19k23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RETST_RAT (Q8VHE9) All-trans-retinol 13,14-reductase precursor (... 29 9.9
2RETST_MOUSE (Q64FW2) All-trans-retinol 13,14-reductase precursor... 29 9.9

>RETST_RAT (Q8VHE9) All-trans-retinol 13,14-reductase precursor (EC 1.3.99.23)|
           (All-trans-13,14-dihydroretinol saturase) (RetSat)
           (RMT-7)
          Length = 609

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 13  PXTTQY*LAASRSKYHPRIHTYVRTYIHQMRSASRCSPLLNL 138
           P T QY LAA R   +   H   R + H M S    +P+ NL
Sbjct: 519 PLTNQYYLAAHRGATYGADHDLARLHPHAMASLRAQTPIPNL 560



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>RETST_MOUSE (Q64FW2) All-trans-retinol 13,14-reductase precursor (EC 1.3.99.23)|
           (All-trans-13,14-dihydroretinol saturase) (RetSat)
          Length = 609

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 13  PXTTQY*LAASRSKYHPRIHTYVRTYIHQMRSASRCSPLLNL 138
           P T QY LAA R   +   H   R + H M S    +P+ NL
Sbjct: 519 PLTNQYYLAAPRGATYGADHDLARLHPHAMASIRAQTPIPNL 560


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,845,876
Number of Sequences: 219361
Number of extensions: 1289092
Number of successful extensions: 2757
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2755
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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