ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19k17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009604.1| Triticum aestivum clone wre1n.pk0082.c6:fis, full... 545 e-152
2gb|AY011123.1| Dactylis glomerata mitochondrial processing pepti... 270 5e-69
3dbj|AK101856.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
4dbj|AK071930.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
5ref|NM_189667.1| Oryza sativa (japonica cultivar-group), predic... 149 1e-32
6gb|AY108609.1| Zea mays PCO088346 mRNA sequence 135 2e-28
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
8dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
9emb|AL049820.23|HSDJ137K2 Human DNA sequence from clone RP1-137K... 46 0.12
10gb|AC102910.13| Mus musculus chromosome 15, clone RP24-280E23, c... 42 1.9
11gb|AC110209.11| Mus musculus chromosome 12, clone RP23-279O18, c... 42 1.9
12ref|XM_758790.1| Theileria parva strain Muguga chromosome 4 hypo... 42 1.9
13gb|AC080073.6| Homo sapiens BAC clone RP11-321C7 from 7, complet... 42 1.9
14emb|AL645617.9| Human DNA sequence from clone RP11-796C22 on chr... 42 1.9
15emb|AL022144.1|HS35C21 Human DNA sequence from clone RP1-35C21 o... 42 1.9
16ref|NM_065960.2| Caenorhabditis elegans T12A2.8 (T12A2.8) mRNA, ... 42 1.9
17gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complet... 42 1.9
18emb|BX469897.6| Zebrafish DNA sequence from clone CH211-39F22 in... 42 1.9
19emb|CT009504.11| Mouse DNA sequence from clone RP23-149M9 on chr... 42 1.9
20gb|AC131190.3| Mus musculus BAC clone RP24-332E15 from chromosom... 40 7.6
21gb|AC183773.2| Pan troglodytes BAC clone CH251-2N7 from chromoso... 40 7.6
22emb|Z81503.1|CEF14F7 Caenorhabditis elegans Cosmid F14F7, comple... 40 7.6
23gb|AF101305.2| Caenorhabditis elegans cosmid C04F5, complete seq... 40 7.6
24gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2... 40 7.6
25emb|AL121908.16|HSDJ719C8 Human DNA sequence from clone RP4-719C... 40 7.6
26emb|CR392344.7| Zebrafish DNA sequence from clone CH211-239D11 i... 40 7.6
27gb|AF498420.1| Pseudomonas aeruginosa serotype 09 putative O-ant... 40 7.6
28gb|AF498400.1| Pseudomonas aeruginosa serotype 01 putative O-ant... 40 7.6
29dbj|AK095305.1| Homo sapiens cDNA FLJ37986 fis, clone CTONG20111... 40 7.6
30gb|AC090479.6| Mus Musculus Chromosome 18 RP23-363E23, complete ... 40 7.6
31gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, comp... 40 7.6
32emb|BX323090.7| Zebrafish DNA sequence from clone CH211-274B7 in... 40 7.6
33gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, comp... 40 7.6
34gb|AF540990.1| Pseudomonas aeruginosa isolate 1-60 O-antigen bio... 40 7.6
35gb|AC073244.13| Homo sapiens 3 BAC RP11-207J1 (Roswell Park Canc... 40 7.6
36gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, com... 40 7.6
37gb|AC115894.6| Mus musculus chromosome 18, clone RP24-443A14, co... 40 7.6
38gb|AC171197.1| Mus musculus BAC clone RP23-216J7 from chromosome... 40 7.6 
>gb|BT009604.1| Triticum aestivum clone wre1n.pk0082.c6:fis, full insert mRNA
            sequence
          Length = 1676

 Score =  545 bits (275), Expect = e-152
 Identities = 340/361 (94%), Gaps = 8/361 (2%)
 Strand = Plus / Minus

                                                                        
Query: 199  taagatcccaaagttgtcccagtgtagaggagttaatgaccaaaattgtatgcatcttat 258
            ||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||||||
Sbjct: 1441 taagatcccaaagttatcccacagtagaggagttaataaccaaaattgtatgcatcttat 1382

                                                                        
Query: 259  ttttcttgtgaaaaatgtgaccacagatgatcttgaagaaaaa---atatgaacagttaa 315
            |||||||||||||||||||||||     | ||||| |||||||   ||||||||||||||
Sbjct: 1381 ttttcttgtgaaaaatgtgacca-----ggtcttggagaaaaataaatatgaacagttaa 1327

                                                                        
Query: 316  cttgttcagaagcctcctcatttcgagctgaacttgccacgcactgtctcataggctggt 375
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1326 cttgttcagaagcctcctcatttcgagctgaacttgccacgcactgtctcgtaggctggt 1267

                                                                        
Query: 376  acgctgagaacgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagca 435
            ||  ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1266 acattgagaacatttccatgagatgccattgtcaatggtgacgagatgatcttctcagca 1207

                                                                        
Query: 436  acagttgatacatctgccagagttatagcatcaacagcctttagaagctgctccacaggt 495
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1206 acagttgatacatctgccagagttatagcatcaacagccttaagaagctgctccacaggt 1147

                                                                        
Query: 496  ttcctttcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcctttgat 555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 ttcctttcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcctttgat 1087

             
Query: 556  t 556
            |
Sbjct: 1086 t 1086



 Score =  204 bits (103), Expect = 2e-49
 Identities = 168/187 (89%), Gaps = 5/187 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttgaatctttattnntttccttgccccg-cactagtttcaacgactttaacc-aaaaaag 58
            |||||||||||||  ||||  ||||||| |||| |||||| ||||||||||| |||||||
Sbjct: 1646 ttgaatctttattcatttctgtgccccgacactggtttcatcgactttaacccaaaaaag 1587

                                                                        
Query: 59   tggaggaacattttgtacacccttccggactgccaccgaaagagggccacccatgcatga 118
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||
Sbjct: 1586 tggaggaacattttgtacacccttccggactgccactgaaagagggccacccatatatga 1527

                                                                        
Query: 119  tttcactgaatttacagtaacatatctcaagagaacaacatcacaccaccaaactcaggt 178
            ||||||||||||||||| ||||||||||  |||   |||||||||||| |||| ||||||
Sbjct: 1526 tttcactgaatttacaggaacatatctcttgag---aacatcacaccaacaaattcaggt 1470

                   
Query: 179  ggataca 185
            |||||||
Sbjct: 1469 ggataca 1463
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>gb|AY011123.1| Dactylis glomerata mitochondrial processing peptidase alpha-chain
            precursor (DGMPP) mRNA, complete cds
          Length = 1799

 Score =  270 bits (136), Expect = 5e-69
 Identities = 251/288 (87%), Gaps = 1/288 (0%)
 Strand = Plus / Minus

                                                                        
Query: 270  aaaatgtgaccacagatgatcttgaa-gaaaaaatatgaacagttaacttgttcagaagc 328
            |||||||||||| | ||||||||| | ||||| |||| |||||||| ||||| |||| ||
Sbjct: 1659 aaaatgtgaccagaaatgatcttggatgaaaatatatcaacagttatcttgtccagacgc 1600

                                                                        
Query: 329  ctcctcatttcgagctgaacttgccacgcactgtctcataggctggtacgctgagaacgt 388
            || |||||||||||||||||||||| ||||||||||| || ||||||||| |||||||||
Sbjct: 1599 ctactcatttcgagctgaacttgccgcgcactgtctcgtaagctggtacgttgagaacgt 1540

                                                                        
Query: 389  ttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgatacat 448
             |||||| ||||||||||||||||||||||||||||| ||| |||| | || ||||||||
Sbjct: 1539 ctccatgggatgccattgtcaatggtgatgagatgattttctcagcgagagctgatacat 1480

                                                                        
Query: 449  ctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcctttcaccaa 508
            ||  |||||  | | |||| |||  ||| ||||| ||||| |||||||||||||||||||
Sbjct: 1479 ctttcagagaaacaccatcgacaatcttaagaagttgctcaacaggtttcctttcaccaa 1420

                                                            
Query: 509  atgccaatgcttggcgccccatgtcttcagttgttgatgcctttgatt 556
            |||||||  ||||||||||||| |||||||||| ||||||||||||||
Sbjct: 1419 atgccaaaacttggcgccccatatcttcagttgctgatgcctttgatt 1372
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>dbj|AK101856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069O10, full
            insert sequence
          Length = 2012

 Score =  168 bits (85), Expect = 1e-38
 Identities = 190/225 (84%)
 Strand = Plus / Minus

                                                                        
Query: 332  ctcatttcgagctgaacttgccacgcactgtctcataggctggtacgctgagaacgtttc 391
            ||||||||||||  ||||||||||  ||||  ||||| | ||| ||| | ||||||||||
Sbjct: 1650 ctcatttcgagcgaaacttgccactgactgaatcataagttggcacgttcagaacgtttc 1591

                                                                        
Query: 392  catgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgatacatctg 451
            |||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |  ||| 
Sbjct: 1590 catgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaatgtctt 1531

                                                                        
Query: 452  ccagagttatagcatcaacagcctttagaagctgctccacaggtttcctttcaccaaatg 511
             |||||| | | ||||||||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct: 1530 tcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcctttcaccaaagg 1471

                                                         
Query: 512  ccaatgcttggcgccccatgtcttcagttgttgatgcctttgatt 556
            |||||  ||| || |||||||||||||||| ||||||||||||||
Sbjct: 1470 ccaatatttgccgtcccatgtcttcagttgctgatgcctttgatt 1426
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>dbj|AK071930.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073N24, full
            insert sequence
          Length = 1991

 Score =  168 bits (85), Expect = 1e-38
 Identities = 190/225 (84%)
 Strand = Plus / Minus

                                                                        
Query: 332  ctcatttcgagctgaacttgccacgcactgtctcataggctggtacgctgagaacgtttc 391
            ||||||||||||  ||||||||||  ||||  ||||| | ||| ||| | ||||||||||
Sbjct: 1644 ctcatttcgagcgaaacttgccactgactgaatcataagttggcacgttcagaacgtttc 1585

                                                                        
Query: 392  catgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgatacatctg 451
            |||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |  ||| 
Sbjct: 1584 catgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaatgtctt 1525

                                                                        
Query: 452  ccagagttatagcatcaacagcctttagaagctgctccacaggtttcctttcaccaaatg 511
             |||||| | | ||||||||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct: 1524 tcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcctttcaccaaagg 1465

                                                         
Query: 512  ccaatgcttggcgccccatgtcttcagttgttgatgcctttgatt 556
            |||||  ||| || |||||||||||||||| ||||||||||||||
Sbjct: 1464 ccaatatttgccgtcccatgtcttcagttgctgatgcctttgatt 1420
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>ref|NM_189667.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2478

 Score =  149 bits (75), Expect = 1e-32
 Identities = 147/171 (85%)
 Strand = Plus / Minus

                                                                        
Query: 386  cgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgata 445
            |||||||||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |
Sbjct: 2143 cgtttccatgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaa 2084

                                                                        
Query: 446  catctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcctttcac 505
              |||  |||||| | | ||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 2083 tgtctttcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcctttcac 2024

                                                               
Query: 506  caaatgccaatgcttggcgccccatgtcttcagttgttgatgcctttgatt 556
            |||| ||||||  ||| || |||||||||||||||| ||||||||||||||
Sbjct: 2023 caaaggccaatatttgccgtcccatgtcttcagttgctgatgcctttgatt 1973
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>gb|AY108609.1| Zea mays PCO088346 mRNA sequence
          Length = 2030

 Score =  135 bits (68), Expect = 2e-28
 Identities = 131/152 (86%)
 Strand = Plus / Minus

                                                                        
Query: 382  agaacgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagtt 441
            |||||||||||||||||||||||||||||||| ||||| ||||||||  |||||||||  
Sbjct: 1616 agaacgtttccatgagatgccattgtcaatggggatgaaatgatcttttcagcaacagac 1557

                                                                        
Query: 442  gatacatctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcctt 501
            | || ||||  || ||| | | |||| |||||||| ||||| |||||  |||||||||||
Sbjct: 1556 gttatatctttcatagtaacaccatctacagccttgagaaggtgctcagcaggtttcctt 1497

                                            
Query: 502  tcaccaaatgccaatgcttggcgccccatgtc 533
            ||||||||||||||  ||||||||||||||||
Sbjct: 1496 tcaccaaatgccaaaacttggcgccccatgtc 1465
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                           
Query: 386     cgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgata 445
               |||||||||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |
Sbjct: 4895375 cgtttccatgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaa 4895316

                                                                      
Query: 446     catctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcct 500
                 |||  |||||| | | ||||||||||||| ||||| ||||| |||||||||||
Sbjct: 4895315 tgtctttcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcct 4895261



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                    
Query: 498     cctttcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcct 550
               |||||||||||| ||||||  ||| || |||||||||||||||| ||||||||
Sbjct: 4894375 cctttcaccaaaggccaatatttgccgtcccatgtcttcagttgctgatgcct 4894323
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>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0710E05
          Length = 179714

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                          
Query: 386    cgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgata 445
              |||||||||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |
Sbjct: 140024 cgtttccatgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaa 139965

                                                                     
Query: 446    catctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcct 500
                |||  |||||| | | ||||||||||||| ||||| ||||| |||||||||||
Sbjct: 139964 tgtctttcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcct 139910



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                   
Query: 498    cctttcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcct 550
              |||||||||||| ||||||  ||| || |||||||||||||||| ||||||||
Sbjct: 139024 cctttcaccaaaggccaatatttgccgtcccatgtcttcagttgctgatgcct 138972
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>emb|AL049820.23|HSDJ137K2 Human DNA sequence from clone RP1-137K2 on chromosome 6q25.1-25.3
              Contains part of the gene for BRG1-binding protein ELD/OSA1
              (p250R KIAA1235) (FLJ00253 FLJ22292), a novel gene and two
              CpG islands, complete sequence
          Length = 187507

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 113    gcatgatttcactgaatttacag 135
              |||||||||||||||||||||||
Sbjct: 161069 gcatgatttcactgaatttacag 161091
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>gb|AC102910.13| Mus musculus chromosome 15, clone RP24-280E23, complete sequence
          Length = 179719

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 229   agttaatgaccaaaattgtat 249
             |||||||||||||||||||||
Sbjct: 61917 agttaatgaccaaaattgtat 61937
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>gb|AC110209.11| Mus musculus chromosome 12, clone RP23-279O18, complete sequence
          Length = 177587

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 449   ctgccagagttatagcatcaa 469
             |||||||||||||||||||||
Sbjct: 20594 ctgccagagttatagcatcaa 20614
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>ref|XM_758790.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
           (TP04_0248) partial mRNA
          Length = 1698

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 152 aacaacatcacaccaccaaactcag 176
           |||||| ||||||||||||||||||
Sbjct: 809 aacaacttcacaccaccaaactcag 785
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>gb|AC080073.6| Homo sapiens BAC clone RP11-321C7 from 7, complete sequence
          Length = 57075

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 412   ggtgatgagatgatcttcgcagcaa 436
             ||||||||||||||||| |||||||
Sbjct: 35226 ggtgatgagatgatctttgcagcaa 35202
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>emb|AL645617.9| Human DNA sequence from clone RP11-796C22 on chromosome 10 Contains
             part of the UPF2 gene for UPF2 regulator of nonsense
             transcripts homolog (yeast) (FLJ38872), complete sequence
          Length = 76287

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 412   ggtgatgagatgatcttcgcagcaa 436
             |||||||||||||||| ||||||||
Sbjct: 58397 ggtgatgagatgatctgcgcagcaa 58421
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>emb|AL022144.1|HS35C21 Human DNA sequence from clone RP1-35C21 on chromosome 1q23-24, complete
             sequence
          Length = 91017

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 477   tagaagctgctccacaggttt 497
             |||||||||||||||||||||
Sbjct: 64202 tagaagctgctccacaggttt 64182
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>ref|NM_065960.2| Caenorhabditis elegans T12A2.8 (T12A2.8) mRNA, complete cds
          Length = 2544

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 261 ttcttgtgaaaaatgtgacca 281
           |||||||||||||||||||||
Sbjct: 268 ttcttgtgaaaaatgtgacca 248
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>gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complete sequence
          Length = 87248

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 258   tttttcttgtgaaaaatgtga 278
             |||||||||||||||||||||
Sbjct: 40734 tttttcttgtgaaaaatgtga 40714
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>emb|BX469897.6| Zebrafish DNA sequence from clone CH211-39F22 in linkage group 4,
             complete sequence
          Length = 186500

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 501   ttcaccaaatgccaatgcttg 521
             |||||||||||||||||||||
Sbjct: 35705 ttcaccaaatgccaatgcttg 35685
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>emb|CT009504.11| Mouse DNA sequence from clone RP23-149M9 on chromosome 12, complete
            sequence
          Length = 190345

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 449  ctgccagagttatagcatcaa 469
            |||||||||||||||||||||
Sbjct: 2934 ctgccagagttatagcatcaa 2914
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>gb|AC131190.3| Mus musculus BAC clone RP24-332E15 from chromosome 5, complete sequence
          Length = 176925

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   tgcatcttatttttcttgtg 268
             ||||||||||||||||||||
Sbjct: 96818 tgcatcttatttttcttgtg 96799
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>gb|AC183773.2| Pan troglodytes BAC clone CH251-2N7 from chromosome 7, complete sequence
          Length = 168126

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 412    ggtgatgagatgatcttcgcagca 435
              ||||||||||||||||| ||||||
Sbjct: 123750 ggtgatgagatgatctttgcagca 123773
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>emb|Z81503.1|CEF14F7 Caenorhabditis elegans Cosmid F14F7, complete sequence
          Length = 25468

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 239  caaaattgtatgcatcttat 258
            ||||||||||||||||||||
Sbjct: 8625 caaaattgtatgcatcttat 8606
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>gb|AF101305.2| Caenorhabditis elegans cosmid C04F5, complete sequence
          Length = 40766

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   aatgaccaaaattgtatgca 252
             ||||||||||||||||||||
Sbjct: 32199 aatgaccaaaattgtatgca 32218
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>gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete
              sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    gttaatgaccaaaattgtat 249
              ||||||||||||||||||||
Sbjct: 246428 gttaatgaccaaaattgtat 246409
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>emb|AL121908.16|HSDJ719C8 Human DNA sequence from clone RP4-719C8 on chromosome 20 Contains three
              different 5' ends of the C20orf101 gene and three CpG
              islands, complete sequence
          Length = 150985

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    agatgatcttgaagaaaaaa 302
              ||||||||||||||||||||
Sbjct: 139494 agatgatcttgaagaaaaaa 139475
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>emb|CR392344.7| Zebrafish DNA sequence from clone CH211-239D11 in linkage group 20
             Contains the 3' end of the gene for a novel protein
             similar to vertebrate X-ray repair complementing defective
             repair in Chinese hamster cells 5 (double-strand-break
             rejoining; Ku autoantigen, 80kDa) (XRCC5), the gene for a
             novel protein similar to vertebrate SWI/SNF related matrix
             associated actin dependent regulator of chromatin
             subfamily a-like 1 (SMARCAL1), two novel genes and three
             CpG islands, complete sequence
          Length = 150882

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   cacaccaccaaactcaggtg 179
             ||||||||||||||||||||
Sbjct: 20138 cacaccaccaaactcaggtg 20157
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>gb|AF498420.1| Pseudomonas aeruginosa serotype 09 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 16349

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   gatgccattgtcaatggtga 416
             ||||||||||||||||||||
Sbjct: 13177 gatgccattgtcaatggtga 13196
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>gb|AF498400.1| Pseudomonas aeruginosa serotype 01 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 17453

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   gatgccattgtcaatggtga 416
             ||||||||||||||||||||
Sbjct: 14281 gatgccattgtcaatggtga 14300
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>dbj|AK095305.1| Homo sapiens cDNA FLJ37986 fis, clone CTONG2011188, highly similar
           to EPHRIN TYPE-B RECEPTOR 1 PRECURSOR (EC 2.7.1.112)
          Length = 2737

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 314 aacttgttcagaagcctcct 333
           ||||||||||||||||||||
Sbjct: 187 aacttgttcagaagcctcct 168
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>gb|AC090479.6| Mus Musculus Chromosome 18 RP23-363E23, complete sequence
          Length = 199409

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    atttcactgaatttacagta 137
              ||||||||||||||||||||
Sbjct: 177713 atttcactgaatttacagta 177694
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>gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, complete sequence
          Length = 166133

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   gaagaaaaaatatgaacagt 312
             ||||||||||||||||||||
Sbjct: 45416 gaagaaaaaatatgaacagt 45435
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>emb|BX323090.7| Zebrafish DNA sequence from clone CH211-274B7 in linkage group 1,
              complete sequence
          Length = 166353

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 249    tgcatcttatttttcttgtgaaaa 272
              |||||||||||||| |||||||||
Sbjct: 150147 tgcatcttattttttttgtgaaaa 150124
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>gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, complete sequence
          Length = 184142

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   gaagaaaaaatatgaacagt 312
             ||||||||||||||||||||
Sbjct: 89621 gaagaaaaaatatgaacagt 89640
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>gb|AF540990.1| Pseudomonas aeruginosa isolate 1-60 O-antigen biosynthetic locus,
             partial sequence
          Length = 19104

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   gatgccattgtcaatggtga 416
             ||||||||||||||||||||
Sbjct: 15929 gatgccattgtcaatggtga 15948
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>gb|AC073244.13| Homo sapiens 3 BAC RP11-207J1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 109999

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 314   aacttgttcagaagcctcct 333
             ||||||||||||||||||||
Sbjct: 91747 aacttgttcagaagcctcct 91766
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>gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, complete sequence
          Length = 203368

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   gaagaaaaaatatgaacagt 312
             ||||||||||||||||||||
Sbjct: 80706 gaagaaaaaatatgaacagt 80725
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>gb|AC115894.6| Mus musculus chromosome 18, clone RP24-443A14, complete sequence
          Length = 185242

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    atttcactgaatttacagta 137
              ||||||||||||||||||||
Sbjct: 128212 atttcactgaatttacagta 128231
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>gb|AC171197.1| Mus musculus BAC clone RP23-216J7 from chromosome 5, complete
            sequence
          Length = 211677

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 249  tgcatcttatttttcttgtg 268
            ||||||||||||||||||||
Sbjct: 9841 tgcatcttatttttcttgtg 9822


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,545,367
Number of Sequences: 3902068
Number of extensions: 5545367
Number of successful extensions: 115812
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115662
Number of HSP's gapped (non-prelim): 145
length of query: 558
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 535
effective length of database: 17,143,297,704
effective search space: 9171664271640
effective search space used: 9171664271640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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