ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19k14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196422.1| Oryza sativa (japonica cultivar-group) putative... 64 2e-07
2gb|AF435640.1| Oryza sativa CSLA2 mRNA, partial cds 64 2e-07
3gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nippo... 60 4e-06
4tpg|BK000092.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-gr... 60 4e-06
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-06
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 60 4e-06
7emb|AL132862.1|CEY73F8A Caenorhabditis elegans YAC Y73F8A, compl... 42 0.89
8emb|CR392033.5| Zebrafish DNA sequence from clone DKEY-122A22 in... 40 3.5
9emb|AL672088.9| Zebrafish DNA sequence from clone BUSM1-153O2 Co... 40 3.5
10dbj|AP001998.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 3.5
11dbj|AP000629.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 3.5
12dbj|AP006258.1| Homo sapiens genomic DNA, chromosome 11, clone:R... 40 3.5
13dbj|AP005639.2| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.5 
>ref|NM_196422.1| Oryza sativa (japonica cultivar-group) putative glucosyltransferase
            (OSJNBa0060A14.12), mRNA
          Length = 1485

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 96/120 (80%)
 Strand = Plus / Minus

                                                                        
Query: 150  tggaggtagatgtacgtgaagnatgtctggcttccaagcacgtaatcatacgangcgcat 209
            ||||||||||||||  || || || | ||  ||||||| ||| |||||||||| || |||
Sbjct: 1424 tggaggtagatgtagatgtagtatttatgatttccaagaacgaaatcatacgatgcacat 1365

                                                                        
Query: 210  atcaanagntagagcgcgagcaanagctnagggatgtaaatcctntncacacattcagtg 269
            || |  || |||||||| ||||| |||| ||| ||||||||||| |   |||||||||||
Sbjct: 1364 ataaggagatagagcgcaagcaagagctcaggaatgtaaatcctttcagcacattcagtg 1305
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>gb|AF435640.1| Oryza sativa CSLA2 mRNA, partial cds
          Length = 1094

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 96/120 (80%)
 Strand = Plus / Minus

                                                                       
Query: 150 tggaggtagatgtacgtgaagnatgtctggcttccaagcacgtaatcatacgangcgcat 209
           ||||||||||||||  || || || | ||  ||||||| ||| |||||||||| || |||
Sbjct: 734 tggaggtagatgtagatgtagtatttatgatttccaagaacgaaatcatacgatgcacat 675

                                                                       
Query: 210 atcaanagntagagcgcgagcaanagctnagggatgtaaatcctntncacacattcagtg 269
           || |  || |||||||| ||||| |||| ||| ||||||||||| |   |||||||||||
Sbjct: 674 ataaggagatagagcgcaagcaagagctcaggaatgtaaatcctttcagcacattcagtg 615
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>gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0060A14, from chromosome 10, complete sequence
          Length = 151343

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 84/104 (80%)
 Strand = Plus / Plus

                                                                         
Query: 150   tggaggtagatgtacgtgaagnatgtctggcttccaagcacgtaatcatacgangcgcat 209
             ||||||||||||||  || || || | ||  ||||||| ||| |||||||||| || |||
Sbjct: 73610 tggaggtagatgtagatgtagtatttatgatttccaagaacgaaatcatacgatgcacat 73669

                                                         
Query: 210   atcaanagntagagcgcgagcaanagctnagggatgtaaatcct 253
             || |  || |||||||| ||||| |||| ||| |||||||||||
Sbjct: 73670 ataaggagatagagcgcaagcaagagctcaggaatgtaaatcct 73713
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>tpg|BK000092.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) cellulose
            synthase-like A2 gene, complete cds
          Length = 10800

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 84/104 (80%)
 Strand = Plus / Minus

                                                                        
Query: 150  tggaggtagatgtacgtgaagnatgtctggcttccaagcacgtaatcatacgangcgcat 209
            ||||||||||||||  || || || | ||  ||||||| ||| |||||||||| || |||
Sbjct: 7151 tggaggtagatgtagatgtagtatttatgatttccaagaacgaaatcatacgatgcacat 7092

                                                        
Query: 210  atcaanagntagagcgcgagcaanagctnagggatgtaaatcct 253
            || |  || |||||||| ||||| |||| ||| |||||||||||
Sbjct: 7091 ataaggagatagagcgcaagcaagagctcaggaatgtaaatcct 7048
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 84/104 (80%)
 Strand = Plus / Plus

                                                                            
Query: 150      tggaggtagatgtacgtgaagnatgtctggcttccaagcacgtaatcatacgangcgcat 209
                ||||||||||||||  || || || | ||  ||||||| ||| |||||||||| || |||
Sbjct: 13381233 tggaggtagatgtagatgtagtatttatgatttccaagaacgaaatcatacgatgcacat 13381292

                                                            
Query: 210      atcaanagntagagcgcgagcaanagctnagggatgtaaatcct 253
                || |  || |||||||| ||||| |||| ||| |||||||||||
Sbjct: 13381293 ataaggagatagagcgcaagcaagagctcaggaatgtaaatcct 13381336
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 84/104 (80%)
 Strand = Plus / Plus

                                                                            
Query: 150      tggaggtagatgtacgtgaagnatgtctggcttccaagcacgtaatcatacgangcgcat 209
                ||||||||||||||  || || || | ||  ||||||| ||| |||||||||| || |||
Sbjct: 13388573 tggaggtagatgtagatgtagtatttatgatttccaagaacgaaatcatacgatgcacat 13388632

                                                            
Query: 210      atcaanagntagagcgcgagcaanagctnagggatgtaaatcct 253
                || |  || |||||||| ||||| |||| ||| |||||||||||
Sbjct: 13388633 ataaggagatagagcgcaagcaagagctcaggaatgtaaatcct 13388676
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>emb|AL132862.1|CEY73F8A Caenorhabditis elegans YAC Y73F8A, complete sequence
          Length = 322774

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 71     aaaaattgtaacaaatctcta 91
              |||||||||||||||||||||
Sbjct: 307762 aaaaattgtaacaaatctcta 307742
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>emb|CR392033.5| Zebrafish DNA sequence from clone DKEY-122A22 in linkage group 16,
              complete sequence
          Length = 170291

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     taaaaattgtaacaaatctc 89
              ||||||||||||||||||||
Sbjct: 167087 taaaaattgtaacaaatctc 167068
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>emb|AL672088.9| Zebrafish DNA sequence from clone BUSM1-153O2 Contains a novel gene
             similar to FOG2 (friend of GATA 2) and a  CpG island,
             complete sequence
          Length = 93475

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    taaaaattgtaacaaatctc 89
             ||||||||||||||||||||
Sbjct: 34852 taaaaattgtaacaaatctc 34833
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>dbj|AP001998.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-367C21, complete
            sequence
          Length = 161529

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   actctgaactgtaaaaattg 78
            ||||||||||||||||||||
Sbjct: 4674 actctgaactgtaaaaattg 4655
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>dbj|AP000629.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-46E11, complete
             sequence
          Length = 97656

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    actctgaactgtaaaaattg 78
             ||||||||||||||||||||
Sbjct: 66634 actctgaactgtaaaaattg 66615
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>dbj|AP006258.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-24F19, complete
              sequence
          Length = 174444

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     actctgaactgtaaaaattg 78
              ||||||||||||||||||||
Sbjct: 158636 actctgaactgtaaaaattg 158617
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>dbj|AP005639.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-131J4, complete
              sequence
          Length = 168302

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     actctgaactgtaaaaattg 78
              ||||||||||||||||||||
Sbjct: 144362 actctgaactgtaaaaattg 144343


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,271,399
Number of Sequences: 3902068
Number of extensions: 1271399
Number of successful extensions: 21514
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21487
Number of HSP's gapped (non-prelim): 27
length of query: 271
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 249
effective length of database: 17,147,199,772
effective search space: 4269652743228
effective search space used: 4269652743228
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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