ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19k12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106269.1| Zea mays PCO138212 mRNA sequence Length = 1343 Score = 404 bits (204), Expect = e-109 Identities = 300/332 (90%) Strand = Plus / Minus Query: 162 cttcttcacaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatcc 221 |||||||||||||| ||||| || |||||||| ||||||||||||||||||| ||||||| Sbjct: 1223 cttcttcacaggaacggagggagaatcacccaccggcgagggtacttgggcctcccatcc 1164 Query: 222 ttcccgtcgaacagcttcctcaggcggctgtgctttccaagcgcccagttggtcatgatg 281 || ||||| ||||||||| |||| ||||||||||| || ||||||||||||||||||||| Sbjct: 1163 ttgccgtcaaacagcttcttcagacggctgtgcttgccgagcgcccagttggtcatgatg 1104 Query: 282 gccgccgccacggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccg 341 ||||||||||| |||||||||||||||| ||||||||||| |||||||||||||| ||| Sbjct: 1103 cccgccgccacgacaaggaagacgtaacctgccacggtctgtgtggcgatgttgaagccg 1044 Query: 342 agccattggtagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccc 401 | ||| |||||||||||||||||||| || ||||| |||||||||||||||| ||| || Sbjct: 1043 acccactggtagatctcggtggtgtaattggcgcaggtcacgatgttgaacaagaaaccg 984 Query: 402 cgtgggatctggtagccgccgctgccggtcgggctcctgaggttcctcagcaggatgtgg 461 || ||||||||||| |||||||||||| | |||||||||||||||| ||||||||||||| Sbjct: 983 cgggggatctggtacccgccgctgccgcttgggctcctgaggttccgcagcaggatgtgg 924 Query: 462 cagtagaagtttgcgatctggcacacgacccc 493 ||||||||||| |||| |||||| |||||||| Sbjct: 923 cagtagaagttcgcgacctggcagacgacccc 892
>gb|BT018162.1| Zea mays clone EL01N0556D07.c mRNA sequence Length = 1165 Score = 377 bits (190), Expect = e-101 Identities = 295/330 (89%) Strand = Plus / Minus Query: 164 tcttcacaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatcctt 223 |||||||||||| ||||| || |||||||| ||||||||||||||||||| ||||||||| Sbjct: 1038 tcttcacaggaacggagggagaatcacccaccggcgagggtacttgggcctcccatcctt 979 Query: 224 cccgtcgaacagcttcctcaggcggctgtgctttccaagcgcccagttggtcatgatggc 283 ||||| ||||||||| |||| |||||||| || || ||||||||||||||||||||| | Sbjct: 978 gccgtcaaacagcttcttcagacggctgtgtttgccgagcgcccagttggtcatgatgcc 919 Query: 284 cgccgccacggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgag 343 ||||||||| |||||||||||||||| ||||||||||| |||||||||||||| |||| Sbjct: 918 tgccgccacgacaaggaagacgtaacctgccacggtctgtgtggcgatgttgaagccgac 859 Query: 344 ccattggtagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccg 403 ||| |||||||||||||||||||| || ||||| |||||||||||||||| ||| || || Sbjct: 858 ccactggtagatctcggtggtgtaattggcgcaggtcacgatgttgaacaagaacccgcg 799 Query: 404 tgggatctggtagccgccgctgccggtcgggctcctgaggttcctcagcaggatgtggca 463 ||||||||||| || ||||||||| | |||||||||||||||| ||||||||||||||| Sbjct: 798 ggggatctggtaccctccgctgccgcttgggctcctgaggttccgcagcaggatgtggca 739 Query: 464 gtagaagtttgcgatctggcacacgacccc 493 ||||||||| |||| |||||| |||||||| Sbjct: 738 gtagaagttcgcgacctggcagacgacccc 709
>ref|XM_550155.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1226 Score = 262 bits (132), Expect = 1e-66 Identities = 270/316 (85%) Strand = Plus / Minus Query: 169 acaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgt 228 |||||||||| ||||| ||||||||||| ||||| ||||| |||| ||| ||||| || | Sbjct: 1017 acaggaatggtggaagaatcacccatcgccgaggatacttcggcctcccttccttgccat 958 Query: 229 cgaacagcttcctcaggcggctgtgctttccaagcgcccagttggtcatgatggccgccg 288 |||||| |||| | || |||| |||||||||||| ||||||||||||||||| ||| | Sbjct: 957 cgaacaacttctttagacggcggtgctttccaagtgcccagttggtcatgatactcgctg 898 Query: 289 ccacggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccatt 348 |||| ||||||||| |||||| ||||| ||||| ||||| ||||||||||| ||||||| Sbjct: 897 ccacaacaaggaagatgtaacctgccacagtctgtgtggcaatgttgaacccaagccatt 838 Query: 349 ggtagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtggga 408 |||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || || | Sbjct: 837 ggtagatctcagtggtatagtttgcgcatgtcactatgttgaacaggaagccacgaggaa 778 Query: 409 tctggtagccgccgctgccggtcgggctcctgaggttcctcagcaggatgtggcagtaga 468 |||| ||||| ||| | || |||| || |||||||||||||||||||| ||||| || | Sbjct: 777 tctgatagccaccgttaccactcggacttctgaggttcctcagcaggatatggcaataaa 718 Query: 469 agtttgcgatctggca 484 ||||||| || ||||| Sbjct: 717 agtttgcaatttggca 702
>dbj|AK066325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062L06, full insert sequence Length = 3501 Score = 262 bits (132), Expect = 1e-66 Identities = 270/316 (85%) Strand = Plus / Minus Query: 169 acaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgt 228 |||||||||| ||||| ||||||||||| ||||| ||||| |||| ||| ||||| || | Sbjct: 3206 acaggaatggtggaagaatcacccatcgccgaggatacttcggcctcccttccttgccat 3147 Query: 229 cgaacagcttcctcaggcggctgtgctttccaagcgcccagttggtcatgatggccgccg 288 |||||| |||| | || |||| |||||||||||| ||||||||||||||||| ||| | Sbjct: 3146 cgaacaacttctttagacggcggtgctttccaagtgcccagttggtcatgatactcgctg 3087 Query: 289 ccacggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccatt 348 |||| ||||||||| |||||| ||||| ||||| ||||| ||||||||||| ||||||| Sbjct: 3086 ccacaacaaggaagatgtaacctgccacagtctgtgtggcaatgttgaacccaagccatt 3027 Query: 349 ggtagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtggga 408 |||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || || | Sbjct: 3026 ggtagatctcagtggtatagtttgcgcatgtcactatgttgaacaggaagccacgaggaa 2967 Query: 409 tctggtagccgccgctgccggtcgggctcctgaggttcctcagcaggatgtggcagtaga 468 |||| ||||| ||| | || |||| || |||||||||||||||||||| ||||| || | Sbjct: 2966 tctgatagccaccgttaccactcggacttctgaggttcctcagcaggatatggcaataaa 2907 Query: 469 agtttgcgatctggca 484 ||||||| || ||||| Sbjct: 2906 agtttgcaatttggca 2891
>dbj|AK060948.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-F04, full insert sequence Length = 1221 Score = 262 bits (132), Expect = 1e-66 Identities = 270/316 (85%) Strand = Plus / Minus Query: 169 acaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgt 228 |||||||||| ||||| ||||||||||| ||||| ||||| |||| ||| ||||| || | Sbjct: 1012 acaggaatggtggaagaatcacccatcgccgaggatacttcggcctcccttccttgccat 953 Query: 229 cgaacagcttcctcaggcggctgtgctttccaagcgcccagttggtcatgatggccgccg 288 |||||| |||| | || |||| |||||||||||| ||||||||||||||||| ||| | Sbjct: 952 cgaacaacttctttagacggcggtgctttccaagtgcccagttggtcatgatactcgctg 893 Query: 289 ccacggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccatt 348 |||| ||||||||| |||||| ||||| ||||| ||||| ||||||||||| ||||||| Sbjct: 892 ccacaacaaggaagatgtaacctgccacagtctgtgtggcaatgttgaacccaagccatt 833 Query: 349 ggtagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtggga 408 |||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || || | Sbjct: 832 ggtagatctcagtggtatagtttgcgcatgtcactatgttgaacaggaagccacgaggaa 773 Query: 409 tctggtagccgccgctgccggtcgggctcctgaggttcctcagcaggatgtggcagtaga 468 |||| ||||| ||| | || |||| || |||||||||||||||||||| ||||| || | Sbjct: 772 tctgatagccaccgttaccactcggacttctgaggttcctcagcaggatatggcaataaa 713 Query: 469 agtttgcgatctggca 484 ||||||| || ||||| Sbjct: 712 agtttgcaatttggca 697
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 212 bits (107), Expect = 8e-52 Identities = 206/239 (86%) Strand = Plus / Plus Query: 246 cggctgtgctttccaagcgcccagttggtcatgatggccgccgccacggcaaggaagacg 305 |||| |||||||||||| ||||||||||||||||| ||| ||||| ||||||||| | Sbjct: 2707081 cggcggtgctttccaagtgcccagttggtcatgatactcgctgccacaacaaggaagatg 2707140 Query: 306 taacccgccacggtctgggtggcgatgttgaacccgagccattggtagatctcggtggtg 365 ||||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||| Sbjct: 2707141 taacctgccacagtctgtgtggcaatgttgaacccaagccattggtagatctcagtggta 2707200 Query: 366 tagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatctggtagccgccgctg 425 ||||||||||||||||| ||||||||||||||||| || || ||||| ||||| ||| | Sbjct: 2707201 tagtttgcgcatgtcactatgttgaacaggaagccacgaggaatctgatagccaccgtta 2707260 Query: 426 ccggtcgggctcctgaggttcctcagcaggatgtggcagtagaagtttgcgatctggca 484 || |||| || |||||||||||||||||||| ||||| || |||||||| || ||||| Sbjct: 2707261 ccactcggacttctgaggttcctcagcaggatatggcaataaaagtttgcaatttggca 2707319 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 169 acaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgt 228 |||||||||| ||||| ||||||||||| ||||| ||||| |||| ||| ||||| || | Sbjct: 2706918 acaggaatggtggaagaatcacccatcgccgaggatacttcggcctcccttccttgccat 2706977 Query: 229 cgaaca 234 |||||| Sbjct: 2706978 cgaaca 2706983
>dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0434B04 Length = 167029 Score = 212 bits (107), Expect = 8e-52 Identities = 206/239 (86%) Strand = Plus / Plus Query: 246 cggctgtgctttccaagcgcccagttggtcatgatggccgccgccacggcaaggaagacg 305 |||| |||||||||||| ||||||||||||||||| ||| ||||| ||||||||| | Sbjct: 156856 cggcggtgctttccaagtgcccagttggtcatgatactcgctgccacaacaaggaagatg 156915 Query: 306 taacccgccacggtctgggtggcgatgttgaacccgagccattggtagatctcggtggtg 365 ||||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||| Sbjct: 156916 taacctgccacagtctgtgtggcaatgttgaacccaagccattggtagatctcagtggta 156975 Query: 366 tagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatctggtagccgccgctg 425 ||||||||||||||||| ||||||||||||||||| || || ||||| ||||| ||| | Sbjct: 156976 tagtttgcgcatgtcactatgttgaacaggaagccacgaggaatctgatagccaccgtta 157035 Query: 426 ccggtcgggctcctgaggttcctcagcaggatgtggcagtagaagtttgcgatctggca 484 || |||| || |||||||||||||||||||| ||||| || |||||||| || ||||| Sbjct: 157036 ccactcggacttctgaggttcctcagcaggatatggcaataaaagtttgcaatttggca 157094 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 169 acaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgt 228 |||||||||| ||||| ||||||||||| ||||| ||||| |||| ||| ||||| || | Sbjct: 156693 acaggaatggtggaagaatcacccatcgccgaggatacttcggcctcccttccttgccat 156752 Query: 229 cgaaca 234 |||||| Sbjct: 156753 cgaaca 156758
>dbj|AP002522.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0009G03 Length = 163526 Score = 212 bits (107), Expect = 8e-52 Identities = 206/239 (86%) Strand = Plus / Plus Query: 246 cggctgtgctttccaagcgcccagttggtcatgatggccgccgccacggcaaggaagacg 305 |||| |||||||||||| ||||||||||||||||| ||| ||||| ||||||||| | Sbjct: 12758 cggcggtgctttccaagtgcccagttggtcatgatactcgctgccacaacaaggaagatg 12817 Query: 306 taacccgccacggtctgggtggcgatgttgaacccgagccattggtagatctcggtggtg 365 ||||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||| Sbjct: 12818 taacctgccacagtctgtgtggcaatgttgaacccaagccattggtagatctcagtggta 12877 Query: 366 tagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatctggtagccgccgctg 425 ||||||||||||||||| ||||||||||||||||| || || ||||| ||||| ||| | Sbjct: 12878 tagtttgcgcatgtcactatgttgaacaggaagccacgaggaatctgatagccaccgtta 12937 Query: 426 ccggtcgggctcctgaggttcctcagcaggatgtggcagtagaagtttgcgatctggca 484 || |||| || |||||||||||||||||||| ||||| || |||||||| || ||||| Sbjct: 12938 ccactcggacttctgaggttcctcagcaggatatggcaataaaagtttgcaatttggca 12996 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 169 acaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgt 228 |||||||||| ||||| ||||||||||| ||||| ||||| |||| ||| ||||| || | Sbjct: 12595 acaggaatggtggaagaatcacccatcgccgaggatacttcggcctcccttccttgccat 12654 Query: 229 cgaaca 234 |||||| Sbjct: 12655 cgaaca 12660
>ref|NM_115394.2| Arabidopsis thaliana CER10/ECR; 3-oxo-5-alpha-steroid 4-dehydrogenase/ fatty acid elongase AT3G55360 (CER10/ECR) mRNA, complete cds Length = 1319 Score = 95.6 bits (48), Expect = 1e-16 Identities = 198/248 (79%) Strand = Plus / Minus Query: 171 aggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgtcg 230 |||||||||||||| |||||||||| | || ||||| ||| ||||| || || || Sbjct: 1059 aggaatggaggaagtatcacccatcttcttggatactttggctttccatcttttccatca 1000 Query: 231 aacagcttcctcaggcggctgtgctttccaagcgcccagttggtcatgatggccgccgcc 290 || | ||| ||||| ||||||||||||||||| ||||| || |||||||| || || Sbjct: 999 aatatctttctcagacggctgtgctttccaagagcccaattagtcatgattagagcagca 940 Query: 291 acggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattgg 350 || || ||||| || || || || | |||||| || ||||||||||| || ||||||||| Sbjct: 939 acagcgaggaaaacatatcctgcaatggtctgagtagcgatgttgaatcctagccattgg 880 Query: 351 tagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatc 410 || |||||||| ||||| || || ||||| || |||||||| ||||| || ||||| ||| Sbjct: 879 taaatctcggtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatc 820 Query: 411 tggtagcc 418 |||||||| Sbjct: 819 tggtagcc 812
>gb|BT012066.1| Arabidopsis thaliana At3g55360 mRNA sequence Length = 930 Score = 95.6 bits (48), Expect = 1e-16 Identities = 198/248 (79%) Strand = Plus / Minus Query: 171 aggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgtcg 230 |||||||||||||| |||||||||| | || ||||| ||| ||||| || || || Sbjct: 926 aggaatggaggaagtatcacccatcttcttggatactttggctttccatcttttccatca 867 Query: 231 aacagcttcctcaggcggctgtgctttccaagcgcccagttggtcatgatggccgccgcc 290 || | ||| ||||| ||||||||||||||||| ||||| || |||||||| || || Sbjct: 866 aatatctttctcagacggctgtgctttccaagagcccaattagtcatgattagagcagca 807 Query: 291 acggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattgg 350 || || ||||| || || || || | |||||| || ||||||||||| || ||||||||| Sbjct: 806 acagcgaggaaaacatatcctgcaatggtctgagtagcgatgttgaatcctagccattgg 747 Query: 351 tagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatc 410 || |||||||| ||||| || || ||||| || |||||||| ||||| || ||||| ||| Sbjct: 746 taaatctcggtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatc 687 Query: 411 tggtagcc 418 |||||||| Sbjct: 686 tggtagcc 679
>gb|AY081583.1| Arabidopsis thaliana glycoprotein-like (T22E16.2) mRNA, complete cds Length = 1134 Score = 95.6 bits (48), Expect = 1e-16 Identities = 198/248 (79%) Strand = Plus / Minus Query: 171 aggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgtcg 230 |||||||||||||| |||||||||| | || ||||| ||| ||||| || || || Sbjct: 929 aggaatggaggaagtatcacccatcttcttggatactttggctttccatcttttccatca 870 Query: 231 aacagcttcctcaggcggctgtgctttccaagcgcccagttggtcatgatggccgccgcc 290 || | ||| ||||| ||||||||||||||||| ||||| || |||||||| || || Sbjct: 869 aatatctttctcagacggctgtgctttccaagagcccaattagtcatgattagagcagca 810 Query: 291 acggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattgg 350 || || ||||| || || || || | |||||| || ||||||||||| || ||||||||| Sbjct: 809 acagcgaggaaaacatatcctgcaatggtctgagtagcgatgttgaatcctagccattgg 750 Query: 351 tagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatc 410 || |||||||| ||||| || || ||||| || |||||||| ||||| || ||||| ||| Sbjct: 749 taaatctcggtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatc 690 Query: 411 tggtagcc 418 |||||||| Sbjct: 689 tggtagcc 682
>gb|AY065136.1| Arabidopsis thaliana glycoprotein-like (T22E16.2) mRNA, complete cds Length = 1218 Score = 95.6 bits (48), Expect = 1e-16 Identities = 198/248 (79%) Strand = Plus / Minus Query: 171 aggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgtcg 230 |||||||||||||| |||||||||| | || ||||| ||| ||||| || || || Sbjct: 964 aggaatggaggaagtatcacccatcttcttggatactttggctttccatcttttccatca 905 Query: 231 aacagcttcctcaggcggctgtgctttccaagcgcccagttggtcatgatggccgccgcc 290 || | ||| ||||| ||||||||||||||||| ||||| || |||||||| || || Sbjct: 904 aatatctttctcagacggctgtgctttccaagagcccaattagtcatgattagagcagca 845 Query: 291 acggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattgg 350 || || ||||| || || || || | |||||| || ||||||||||| || ||||||||| Sbjct: 844 acagcgaggaaaacatatcctgcaatggtctgagtagcgatgttgaatcctagccattgg 785 Query: 351 tagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatc 410 || |||||||| ||||| || || ||||| || |||||||| ||||| || ||||| ||| Sbjct: 784 taaatctcggtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatc 725 Query: 411 tggtagcc 418 |||||||| Sbjct: 724 tggtagcc 717
>emb|BX826269.1|CNS0A4Y2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL95ZE06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1098 Score = 95.6 bits (48), Expect = 1e-16 Identities = 198/248 (79%) Strand = Plus / Minus Query: 171 aggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgtcg 230 |||||||||||||| |||||||||| | || ||||| ||| ||||| || || || Sbjct: 961 aggaatggaggaagtatcacccatcttcttggatactttggctttccatcttttccatca 902 Query: 231 aacagcttcctcaggcggctgtgctttccaagcgcccagttggtcatgatggccgccgcc 290 || | ||| ||||| ||||||||||||||||| ||||| || |||||||| || || Sbjct: 901 aatatctttctcagacggctgtgctttccaagagcccaattagtcatgattagagcagca 842 Query: 291 acggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattgg 350 || || ||||| || || || || | |||||| || ||||||||||| || ||||||||| Sbjct: 841 acagcgaggaaaacatatcctgcaatggtctgagtagcgatgttgaatcctagccattgg 782 Query: 351 tagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatc 410 || |||||||| ||||| || || ||||| || |||||||| ||||| || ||||| ||| Sbjct: 781 taaatctcggtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatc 722 Query: 411 tggtagcc 418 |||||||| Sbjct: 721 tggtagcc 714
>emb|AL132975.1|ATT22E16 Arabidopsis thaliana DNA chromosome 3, BAC clone T22E16 Length = 103240 Score = 93.7 bits (47), Expect = 5e-16 Identities = 146/179 (81%) Strand = Plus / Plus Query: 240 ctcaggcggctgtgctttccaagcgcccagttggtcatgatggccgccgccacggcaagg 299 ||||| ||||||||||||||||| ||||| || |||||||| || || || || ||| Sbjct: 3825 ctcagacggctgtgctttccaagagcccaattagtcatgattagagcagcaacagcgagg 3884 Query: 300 aagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattggtagatctcg 359 || || || || || | |||||| || ||||||||||| || ||||||||||| |||||| Sbjct: 3885 aaaacatatcctgcaatggtctgagtagcgatgttgaatcctagccattggtaaatctcg 3944 Query: 360 gtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatctggtagcc 418 || ||||| || || ||||| || |||||||| ||||| || ||||| ||||||||||| Sbjct: 3945 gtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatctggtagcc 4003 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 171 aggaatggaggaaggatcacccatc 195 |||||||||||||| |||||||||| Sbjct: 3664 aggaatggaggaagtatcacccatc 3688
>gb|AY088452.1| Arabidopsis thaliana clone 6774 mRNA, complete sequence Length = 1311 Score = 87.7 bits (44), Expect = 3e-14 Identities = 197/248 (79%) Strand = Plus / Minus Query: 171 aggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgtcg 230 |||||||||||||| |||||||||| | || ||||| ||| ||||| || || || Sbjct: 1056 aggaatggaggaagtatcacccatcttcttggatactttggctttccatcttttccatca 997 Query: 231 aacagcttcctcaggcggctgtgctttccaagcgcccagttggtcatgatggccgccgcc 290 || | ||| ||||| ||||||||||||||||| ||||| || |||||||| || || Sbjct: 996 aatatctttctcagacggctgtgctttccaagagcccaattagtcatgattagagcagca 937 Query: 291 acggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattgg 350 || || ||||| || || || || | |||||| || || |||||||| || ||||||||| Sbjct: 936 acagcgaggaaaacatatcctgcaatggtctgagtagcaatgttgaatcctagccattgg 877 Query: 351 tagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatc 410 || |||||||| ||||| || || ||||| || |||||||| ||||| || ||||| ||| Sbjct: 876 taaatctcggtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatc 817 Query: 411 tggtagcc 418 |||||||| Sbjct: 816 tggtagcc 809
>emb|AJ515556.1|CAR515556 Cicer arietinum mRNA for steroid 5-alpha reductase (sr5a gene) Length = 1336 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Minus Query: 236 cttcctcaggcggctgtgctttccaagcgcccagttggtcatgat 280 |||| ||| ||| ||||||||| |||| ||||||||||||||||| Sbjct: 974 cttcttcaagcgcctgtgctttgcaagagcccagttggtcatgat 930
>ref|XM_536835.2| PREDICTED: Canis familiaris hypothetical LOC479707, transcript variant 1 (LOC479707), mRNA Length = 3626 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 436 tcctgaggttcctcagcaggatgtggcag 464 ||||||||| || |||||||||||||||| Sbjct: 3179 tcctgaggtcccccagcaggatgtggcag 3151
>gb|AE004700.1| Pseudomonas aeruginosa PAO1, section 261 of 529 of the complete genome Length = 16118 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 416 gccgccgctgccggtcgggct 436 ||||||||||||||||||||| Sbjct: 2836 gccgccgctgccggtcgggct 2816
>gb|AY946230.1| Hordeum vulgare subsp. vulgare 3' flanking sequence from Ds insertion in TNP-32B Length = 1007 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 ttcacaggaatggaggaagga 186 ||||||||||||||||||||| Sbjct: 167 ttcacaggaatggaggaagga 147
>gb|U48208.1|HIV1U48208 Human immunodeficiency virus type 1 clone 11 sample IV envelope glycoprotein (env) gene, C2-V5 region, partial cds Length = 660 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 352 agatctcggtggtgtagtttg 372 ||||||||||||||||||||| Sbjct: 619 agatctcggtggtgtagtttg 599
>gb|L36679.1|AMLUNA Amycolatopsis methanolica plasmid pMEA300 stf gene, complete cds Length = 13285 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 415 agccgccgctgccggtcgggc 435 ||||||||||||||||||||| Sbjct: 4138 agccgccgctgccggtcgggc 4118
>gb|M75151.1|RATDNA Rattus norvegicus DNA Length = 4931 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 aaatgttgaatctctagatac 141 ||||||||||||||||||||| Sbjct: 856 aaatgttgaatctctagatac 836
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 ccacggtctgggtggcgatg 332 |||||||||||||||||||| Sbjct: 455773 ccacggtctgggtggcgatg 455754
>ref|XM_473416.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2652 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 415 agccgccgctgccggtcgggctcc 438 |||||||||| ||||||||||||| Sbjct: 38 agccgccgcttccggtcgggctcc 15
>emb|CR701735.2|CNS0G4ER Tetraodon nigroviridis full-length cDNA Length = 1495 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 atgatggccgccgccacggc 295 |||||||||||||||||||| Sbjct: 896 atgatggccgccgccacggc 915
>emb|AL663000.4|OSJN00201 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence Length = 127259 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 415 agccgccgctgccggtcgggctcc 438 |||||||||| ||||||||||||| Sbjct: 56858 agccgccgcttccggtcgggctcc 56881
>emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in linkage group 8, complete sequence Length = 218866 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 cggtctgggtggcgatgttg 335 |||||||||||||||||||| Sbjct: 99157 cggtctgggtggcgatgttg 99176
>gb|AC093258.2| Homo sapiens chromosome 5 clone RP11-1E3, complete sequence Length = 151202 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 aacactggaacagaataaat 124 |||||||||||||||||||| Sbjct: 88947 aacactggaacagaataaat 88966
>gb|AC148698.1| Macaca mulatta Major Histocompatibility Complex BAC MMU268P23, complete sequence Length = 185838 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 cagcttcctcaggcggctgt 252 |||||||||||||||||||| Sbjct: 146241 cagcttcctcaggcggctgt 146222
>gb|AC148682.1| Macaca mulatta Major Histocompatibility Complex MMU151L13, complete sequence Length = 199819 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 cagcttcctcaggcggctgt 252 |||||||||||||||||||| Sbjct: 2620 cagcttcctcaggcggctgt 2601
>gb|AC146538.2| Gasterosteus aculeatus clone CH213-118G22, complete sequence Length = 211945 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 tcatgatggccgccgccacg 293 |||||||||||||||||||| Sbjct: 44879 tcatgatggccgccgccacg 44860
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 415 agccgccgctgccggtcgggctcc 438 |||||||||| ||||||||||||| Sbjct: 27532882 agccgccgcttccggtcgggctcc 27532905
>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds Length = 3284914 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 cagcttcctcaggcggctgt 252 |||||||||||||||||||| Sbjct: 3263120 cagcttcctcaggcggctgt 3263139
>gb|AC073624.28| Homo sapiens chromosome 17, clone RP11-537K14, complete sequence Length = 145512 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 agataccagccttgcaagca 155 |||||||||||||||||||| Sbjct: 31611 agataccagccttgcaagca 31592
>gb|AC011750.8| Homo sapiens BAC clone RP11-458C9 from 2, complete sequence Length = 139166 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 aacactggaacagaataaatgttg 128 |||||||||||| ||||||||||| Sbjct: 53954 aacactggaacaaaataaatgttg 53977
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ccgccacggcaaggaagacg 305 |||||||||||||||||||| Sbjct: 2510070 ccgccacggcaaggaagacg 2510089
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 ccacggtctgggtggcgatg 332 |||||||||||||||||||| Sbjct: 1510673 ccacggtctgggtggcgatg 1510654
>emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 in linkage group 7, complete sequence Length = 197927 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 cggtctgggtggcgatgttg 335 |||||||||||||||||||| Sbjct: 170816 cggtctgggtggcgatgttg 170797
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 ctggtagccgccgctgccgg 429 |||||||||||||||||||| Sbjct: 1724509 ctggtagccgccgctgccgg 1724528 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,839,588 Number of Sequences: 3902068 Number of extensions: 3839588 Number of successful extensions: 79427 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79032 Number of HSP's gapped (non-prelim): 395 length of query: 509 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 487 effective length of database: 17,147,199,772 effective search space: 8350686288964 effective search space used: 8350686288964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
