>RFA1_YEAST (P22336) Replication factor-A protein 1 (RF-A) (Single-stranded|
           DNA-binding protein) (DNA-binding protein BUF2)
           (Replication protein A 69 kDa DNA-binding subunit)
          Length = 621

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 22/85 (25%), Positives = 51/85 (60%)
 Frame = -2

Query: 533 LSLFNDQAERIVGCSADNLDRIRKEEGDDMFQLKLKEATWVPHLFRVSVAQNEYMGEKRQ 354
           L+LF+DQA++++G  A+ L  +++E+ ++  ++  +      + FR+   ++ Y  + R 
Sbjct: 534 LTLFDDQAKQLLGVDANTLMSLKEEDPNEFTKIT-QSIQMNEYDFRIRAREDTYNDQSRI 592

Query: 353 RITVRSESPVDFAAEARYQLEEIAR 279
           R TV +   +++ AEA Y  +E+++
Sbjct: 593 RYTVANLHSLNYRAEADYLADELSK 617

>RFA1_PONPY (Q5R7Q4) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (p70)
          Length = 616

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 25/85 (29%), Positives = 41/85 (48%)
 Frame = -2

Query: 533 LSLFNDQAERIVGCSADNLDRIRKEEGDDMFQLKLKEATWVPHLFRVSVAQNEYMGEKRQ 354
           ++ F + AE I+G +A  L  + K++ +  F+   + A +   +FRV V    Y  E R 
Sbjct: 529 VTCFQESAEAILGQNAAYLGEL-KDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRI 587

Query: 353 RITVRSESPVDFAAEARYQLEEIAR 279
           + TV    PVD+    R  +  I R
Sbjct: 588 KATVMDVKPVDYREYGRRLVMSIRR 612

>RFA1_HUMAN (P27694) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (Single-stranded
           DNA-binding protein) (p70)
          Length = 616

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 25/85 (29%), Positives = 41/85 (48%)
 Frame = -2

Query: 533 LSLFNDQAERIVGCSADNLDRIRKEEGDDMFQLKLKEATWVPHLFRVSVAQNEYMGEKRQ 354
           ++ F + AE I+G +A  L  + K++ +  F+   + A +   +FRV V    Y  E R 
Sbjct: 529 VTCFQESAEAILGQNAAYLGEL-KDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRI 587

Query: 353 RITVRSESPVDFAAEARYQLEEIAR 279
           + TV    PVD+    R  +  I R
Sbjct: 588 KATVMDVKPVDYREYGRRLVMSIRR 612

>RFA1_MOUSE (Q8VEE4) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (p70)
          Length = 623

 Score = 37.4 bits (85), Expect = 0.026
 Identities = 24/85 (28%), Positives = 39/85 (45%)
 Frame = -2

Query: 533 LSLFNDQAERIVGCSADNLDRIRKEEGDDMFQLKLKEATWVPHLFRVSVAQNEYMGEKRQ 354
           ++ F + AE I+G +   L  + KE+ +  F+   + A +    FR+ V    Y  E R 
Sbjct: 538 VTCFQESAEAILGQNTMYLGEL-KEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRI 596

Query: 353 RITVRSESPVDFAAEARYQLEEIAR 279
           + TV    PVDF    R  +  I +
Sbjct: 597 KATVMDVKPVDFRDYGRRLIANIRK 621

>RFA1_XENTR (Q5FW17) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (p70)
          Length = 609

 Score = 36.6 bits (83), Expect = 0.045
 Identities = 22/88 (25%), Positives = 41/88 (46%)
 Frame = -2

Query: 533 LSLFNDQAERIVGCSADNLDRIRKEEGDDMFQLKLKEATWVPHLFRVSVAQNEYMGEKRQ 354
           ++ F + AE I+G +A  L  + KE+ +  +    + A +  + FR+ V    Y  E R 
Sbjct: 520 ITCFQESAESILGQNATYLGEL-KEKNEQAYDEVFQNANFRSYTFRIRVKLETYNDESRI 578

Query: 353 RITVRSESPVDFAAEARYQLEEIARLTS 270
           + T     PVD    +R  +  I ++ +
Sbjct: 579 KATAMDVKPVDHKEYSRRLIMNIRKMAA 606

>RFA1_CAEEL (Q19537) Probable replication factor A 73 kDa subunit (RP-A) (RF-A)|
           (Replication factor-A protein 1)
          Length = 655

 Score = 36.2 bits (82), Expect = 0.059
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = -2

Query: 533 LSLFNDQAERIVGCSADNLDRIRKEEGDDMFQLKLKEATWVPHLFRVSVAQNEYMGEKRQ 354
           ++ F D A +IVG SA  L  +  E  D+ +    +   +VP ++R+    + Y  E RQ
Sbjct: 565 VTAFGDSAAKIVGKSAAELGELHDESPDE-YNAIFERLQFVPKMWRLRCKMDSYNEEVRQ 623

Query: 353 RITV 342
           ++TV
Sbjct: 624 KMTV 627

>RFA1_BRARE (Q6NY74) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (p70)
          Length = 601

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 22/88 (25%), Positives = 42/88 (47%)
 Frame = -2

Query: 533 LSLFNDQAERIVGCSADNLDRIRKEEGDDMFQLKLKEATWVPHLFRVSVAQNEYMGEKRQ 354
           ++ F D AE ++G ++  L ++ K+  +  F    + A +   +FR  V    Y  E R 
Sbjct: 514 VTCFQDTAETLLGQNSSYLGQL-KDTNEAAFDEVFQHANFNTFVFRNRVKLETYNDESRI 572

Query: 353 RITVRSESPVDFAAEARYQLEEIARLTS 270
           ++TV    PVD    ++  +  I +L +
Sbjct: 573 KVTVVDAKPVDHREYSKRLIINIRKLAA 600

>Y1794_HAEDU (Q7VKS7) UPF0301 protein HD_1794|
          Length = 186

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -2

Query: 491 SADNLDRIRKEEGDDMFQLKLKEATWVPHLFRVSVAQNEYMGEKRQRITVRSESPVDFAA 312
           S D LD    +   + F + L  +TW PH     +AQN ++  +    T+   S +D   
Sbjct: 109 SGDVLDSFGTQTAPEKFIVCLGCSTWKPHQLEQEIAQNYWLLSEANNQTLFETSYLDRWV 168

Query: 311 EARYQL 294
           EA   L
Sbjct: 169 EANEML 174

>TBP_METTH (O27664) TATA-box-binding protein (TATA-box factor) (TATA|
           sequence-binding protein) (TBP) (Box A-binding protein)
           (BAP)
          Length = 181

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = +3

Query: 345 GDPLPLLAHVLVLRNADTEQVGNPGGFLQLELEHVIALLFSDPIKIICTAA 497
           G PL L A  L L N + E    PG   +L+   V+ LLF    K++CT A
Sbjct: 109 GKPLNLEAVALGLENTEYEPEQFPGLVYRLDDPKVVLLLFGSG-KVVCTGA 158

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 292 RRSPGSPPARRCKRRMPAPLKEISKFTAPCWEKRRCKIMP 173
           RRSP  PPARR  RR P+P     +  +P   +RR    P
Sbjct: 541 RRSPSPPPARR--RRSPSPPPPPRRRRSPSLPRRRSPSPP 578

>SYS_MYCGE (P47251) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 417

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -2

Query: 320 FAAEARYQLEEIARLTSS*KMQEENACSTEGDFQVHRPLL 201
           F+AE  Y LE    + +S + +E ++CS+ GDFQ  R ++
Sbjct: 323 FSAEKTYDLE--VWMAASNEYREVSSCSSCGDFQARRAMI 360

>DNAJ_GEOSL (Q74H58) Chaperone protein dnaJ|
          Length = 373

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = -2

Query: 452 DDMFQLKLKEATWVPHLFRV---SVAQNEYMGEKRQRITVRSESPVDFAAEARYQLEEIA 282
           D    +K+ E T    +FR+    V Q +  G   Q + ++ E+P +     R  LEE A
Sbjct: 291 DGKVSMKIPEGTQSGRIFRLRGKGVPQLQGYGRGDQLVIIKVETPSNLNKRQRELLEEFA 350

Query: 281 RLT 273
           R++
Sbjct: 351 RIS 353

>STA13_MOUSE (Q923Q2) StAR-related lipid transfer protein 13 (StARD13) (START|
           domain-containing protein 13)
          Length = 1113

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 14/65 (21%)
 Frame = -3

Query: 277 SPPARRCKRRMP---------APLKEISKFTAPCWEKRRC-----KIMPAPLEEIDIQAL 140
           SPPA  C++ +P         +PL+  S  + PC ++R+C     K     LE++D+ A 
Sbjct: 314 SPPAA-CRKGLPCSSKSSGESSPLENSSTVSTPCMKERKCHHEANKRGGMYLEDLDVLAG 372

Query: 139 IALLD 125
            AL D
Sbjct: 373 TALPD 377

>RF1_ACIAD (Q6F9S2) Peptide chain release factor 1 (RF-1)|
          Length = 362

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -1

Query: 468 QKRGGR*HVPAQAEGSHLGSPPVPCQRCAERVHGREEAED--HREERV 331
           + RG R  V ++ EG H G   V C+   + V+GR + E   HR +RV
Sbjct: 140 ESRGWRIEVLSENEGEHGGYKEVICRVDGDGVYGRLKFESGAHRVQRV 187


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,731,547
Number of Sequences: 219361
Number of extensions: 1579642
Number of successful extensions: 4719
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4716
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)