ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19j20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U81318.1|TAU81318 Triticum aestivum poly(A)-binding protein (wheatpab) mRNA, complete cds Length = 2237 Score = 1108 bits (559), Expect = 0.0 Identities = 641/668 (95%), Gaps = 3/668 (0%) Strand = Plus / Minus Query: 2 atccatgggaagcctaaaagactagttcaactactggcaaaagctaagtctcaaataa-- 59 |||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| Sbjct: 2139 atccatgggaagcctaaaagactaattcaactaacggcaaaagctaagtctccaataata 2080 Query: 60 -accaagtcattttcagtctagataagtttgatatggtgcaaaaattgtcgctgtttagc 118 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 2079 aaccaagtcattttcagtctagataagtttgatatggtgcaaaaattgtcgccgtagagc 2020 Query: 119 tcaggaagagatgaggccgtcattcaacgaaagcgaagccagctgctgctcgggggactg 178 | |||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| Sbjct: 2019 ttaggaagagatgaggccgtcattcagcgagagcgaagccagctgctgctcaggggactg 1960 Query: 179 gttggtgtgctgctgagcgctgcggagaacctccatggcttcagcaaccttggccttgag 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1959 gttggtgtgctgctgagcgctgcggagaacctccatggcttcagcaaccttggccttgag 1900 Query: 239 agcgtctggcgactcaagcaggtgaagcacctcggtctggtccatctccagaagcatgcc 298 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1899 agcgtctggcgactcaagcaggtgaagcacctcagtctggtccatctccagaagcatgcc 1840 Query: 299 agtaaccttggcagcctggtcgtgctccagctgatcaacaagagggtacaagttctcgcc 358 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1839 ggtcaccttggcagcctggtcgtgctccagctgatcaacaagagggtacaagttctcgcc 1780 Query: 359 aagcatcattctttgcgtctctgggggtgaattggcaagtgcagaagccaatgccccaat 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1779 aagcatcattctttgcgtctctgggggtgaattggcaagtgcagaagccaatgccccaat 1720 Query: 419 tggaactggctgtgacgcaccggcatctctcataggcatgcctcccatctcatatgggga 478 |||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1719 tggaaccggctgtgactcaccggcatctctcataggcatccctcccatctcatatgggga 1660 Query: 479 tgtcatcacacccccaacaccatgcatagcaggatcaggcatgccacgcccagttggata 538 ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| Sbjct: 1659 tgtcatcacacccccaacaccatgcatcgcaggatcaggcatgccacgcccggtctgata 1600 Query: 539 gcggtaaccacgaccaccacccctacccatcatctgctgctgacccatctgcatggattg 598 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1599 gcggtaaccacgaccaccacccctacccagcatctgctgctgacccatctgcatggattg 1540 Query: 599 ctgcattcccccagcaccagctcgcctaccagctgggcgttgtggttgttgtccttgctg 658 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1539 ctgcattccaccagcaccagctcgcctaccagctgggcgttgtggttgttgtccttgctg 1480 Query: 659 aancatag 666 || ||||| Sbjct: 1479 aaccatag 1472
>ref|XM_450039.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2314 Score = 452 bits (228), Expect = e-124 Identities = 405/463 (87%), Gaps = 6/463 (1%) Strand = Plus / Minus Query: 207 acctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtgaagc 266 ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||| Sbjct: 2025 acctccatggcttcagcaaccttggccttgagagcctctggagactcgagcaggtgcagc 1966 Query: 267 acctcggtctggtccatctccagaagcatgccagtaaccttggcagcctggtcgtgctcc 326 ||||| ||||||||||||||||| ||||||||||| ||||| |||||||| || |||||| Sbjct: 1965 acctcagtctggtccatctccagcagcatgccagtcaccttcgcagcctgctcatgctcc 1906 Query: 327 agctgatcaacaagagggtacaagttctcgccaagcatcattctttgcgtctctgggggt 386 ||||||||||||||||| ||||||||||| |||||||||||||||||| || |||| | Sbjct: 1905 agctgatcaacaagaggatacaagttctcaccaagcatcattctttgctgatcaggggct 1846 Query: 387 gaattggcaagtgcagaagccaatgccccaattggaactggctgtgacgcaccggcatct 446 | ||||| ||||||| ||||||||| ||||| || || |||||||||||| | |||||| Sbjct: 1845 gcgttggccagtgcagtagccaatgctccaataggtacaggctgtgacgcagcagcatct 1786 Query: 447 ctcataggcatgcctcccatctcatatggggatgtcatca---cacccccaacaccatgc 503 ||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||| Sbjct: 1785 ctcatgggcatgcctcccatctcatatggagatggcatcacaccacccccaacaccatgc 1726 Query: 504 atagcaggatcaggcatgccacgcccagttggatagcggtaaccacgaccaccaccccta 563 || |||||||||||||||||||| || || ||||| || || ||||| || |||||| Sbjct: 1725 attgcaggatcaggcatgccacgtcctgtaggataccgatagccacg---gccgccccta 1669 Query: 564 cccatcatctgctgctgacccatctgcatggattgctgcattcccccagcaccagctcgc 623 |||||||||| ||||||||||| |||||| |||||||||||| ||||||||||| ||| Sbjct: 1668 gccatcatctgttgctgacccattggcatgggttgctgcattccaccagcaccagcacgc 1609 Query: 624 ctaccagctgggcgttgtggttgttgtccttgctgaancatag 666 |||||||| || || || || |||||||||||||||| ||||| Sbjct: 1608 ctaccagccggacgctgcggctgttgtccttgctgaaccatag 1566
>ref|XM_506632.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1310_F05.15 mRNA Length = 2410 Score = 452 bits (228), Expect = e-124 Identities = 405/463 (87%), Gaps = 6/463 (1%) Strand = Plus / Minus Query: 207 acctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtgaagc 266 ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||| Sbjct: 2032 acctccatggcttcagcaaccttggccttgagagcctctggagactcgagcaggtgcagc 1973 Query: 267 acctcggtctggtccatctccagaagcatgccagtaaccttggcagcctggtcgtgctcc 326 ||||| ||||||||||||||||| ||||||||||| ||||| |||||||| || |||||| Sbjct: 1972 acctcagtctggtccatctccagcagcatgccagtcaccttcgcagcctgctcatgctcc 1913 Query: 327 agctgatcaacaagagggtacaagttctcgccaagcatcattctttgcgtctctgggggt 386 ||||||||||||||||| ||||||||||| |||||||||||||||||| || |||| | Sbjct: 1912 agctgatcaacaagaggatacaagttctcaccaagcatcattctttgctgatcaggggct 1853 Query: 387 gaattggcaagtgcagaagccaatgccccaattggaactggctgtgacgcaccggcatct 446 | ||||| ||||||| ||||||||| ||||| || || |||||||||||| | |||||| Sbjct: 1852 gcgttggccagtgcagtagccaatgctccaataggtacaggctgtgacgcagcagcatct 1793 Query: 447 ctcataggcatgcctcccatctcatatggggatgtcatca---cacccccaacaccatgc 503 ||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||| Sbjct: 1792 ctcatgggcatgcctcccatctcatatggagatggcatcacaccacccccaacaccatgc 1733 Query: 504 atagcaggatcaggcatgccacgcccagttggatagcggtaaccacgaccaccaccccta 563 || |||||||||||||||||||| || || ||||| || || ||||| || |||||| Sbjct: 1732 attgcaggatcaggcatgccacgtcctgtaggataccgatagccacg---gccgccccta 1676 Query: 564 cccatcatctgctgctgacccatctgcatggattgctgcattcccccagcaccagctcgc 623 |||||||||| ||||||||||| |||||| |||||||||||| ||||||||||| ||| Sbjct: 1675 gccatcatctgttgctgacccattggcatgggttgctgcattccaccagcaccagcacgc 1616 Query: 624 ctaccagctgggcgttgtggttgttgtccttgctgaancatag 666 |||||||| || || || || |||||||||||||||| ||||| Sbjct: 1615 ctaccagccggacgctgcggctgttgtccttgctgaaccatag 1573
>dbj|AK101706.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060I24, full insert sequence Length = 2410 Score = 452 bits (228), Expect = e-124 Identities = 405/463 (87%), Gaps = 6/463 (1%) Strand = Plus / Minus Query: 207 acctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtgaagc 266 ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||| Sbjct: 2032 acctccatggcttcagcaaccttggccttgagagcctctggagactcgagcaggtgcagc 1973 Query: 267 acctcggtctggtccatctccagaagcatgccagtaaccttggcagcctggtcgtgctcc 326 ||||| ||||||||||||||||| ||||||||||| ||||| |||||||| || |||||| Sbjct: 1972 acctcagtctggtccatctccagcagcatgccagtcaccttcgcagcctgctcatgctcc 1913 Query: 327 agctgatcaacaagagggtacaagttctcgccaagcatcattctttgcgtctctgggggt 386 ||||||||||||||||| ||||||||||| |||||||||||||||||| || |||| | Sbjct: 1912 agctgatcaacaagaggatacaagttctcaccaagcatcattctttgctgatcaggggct 1853 Query: 387 gaattggcaagtgcagaagccaatgccccaattggaactggctgtgacgcaccggcatct 446 | ||||| ||||||| ||||||||| ||||| || || |||||||||||| | |||||| Sbjct: 1852 gcgttggccagtgcagtagccaatgctccaataggtacaggctgtgacgcagcagcatct 1793 Query: 447 ctcataggcatgcctcccatctcatatggggatgtcatca---cacccccaacaccatgc 503 ||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||| Sbjct: 1792 ctcatgggcatgcctcccatctcatatggagatggcatcacaccacccccaacaccatgc 1733 Query: 504 atagcaggatcaggcatgccacgcccagttggatagcggtaaccacgaccaccaccccta 563 || |||||||||||||||||||| || || ||||| || || ||||| || |||||| Sbjct: 1732 attgcaggatcaggcatgccacgtcctgtaggataccgatagccacg---gccgccccta 1676 Query: 564 cccatcatctgctgctgacccatctgcatggattgctgcattcccccagcaccagctcgc 623 |||||||||| ||||||||||| |||||| |||||||||||| ||||||||||| ||| Sbjct: 1675 gccatcatctgttgctgacccattggcatgggttgctgcattccaccagcaccagcacgc 1616 Query: 624 ctaccagctgggcgttgtggttgttgtccttgctgaancatag 666 |||||||| || || || || |||||||||||||||| ||||| Sbjct: 1615 ctaccagccggacgctgcggctgttgtccttgctgaaccatag 1573
>dbj|AK067816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116F07, full insert sequence Length = 2314 Score = 452 bits (228), Expect = e-124 Identities = 405/463 (87%), Gaps = 6/463 (1%) Strand = Plus / Minus Query: 207 acctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtgaagc 266 ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||| Sbjct: 2025 acctccatggcttcagcaaccttggccttgagagcctctggagactcgagcaggtgcagc 1966 Query: 267 acctcggtctggtccatctccagaagcatgccagtaaccttggcagcctggtcgtgctcc 326 ||||| ||||||||||||||||| ||||||||||| ||||| |||||||| || |||||| Sbjct: 1965 acctcagtctggtccatctccagcagcatgccagtcaccttcgcagcctgctcatgctcc 1906 Query: 327 agctgatcaacaagagggtacaagttctcgccaagcatcattctttgcgtctctgggggt 386 ||||||||||||||||| ||||||||||| |||||||||||||||||| || |||| | Sbjct: 1905 agctgatcaacaagaggatacaagttctcaccaagcatcattctttgctgatcaggggct 1846 Query: 387 gaattggcaagtgcagaagccaatgccccaattggaactggctgtgacgcaccggcatct 446 | ||||| ||||||| ||||||||| ||||| || || |||||||||||| | |||||| Sbjct: 1845 gcgttggccagtgcagtagccaatgctccaataggtacaggctgtgacgcagcagcatct 1786 Query: 447 ctcataggcatgcctcccatctcatatggggatgtcatca---cacccccaacaccatgc 503 ||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||| Sbjct: 1785 ctcatgggcatgcctcccatctcatatggagatggcatcacaccacccccaacaccatgc 1726 Query: 504 atagcaggatcaggcatgccacgcccagttggatagcggtaaccacgaccaccaccccta 563 || |||||||||||||||||||| || || ||||| || || ||||| || |||||| Sbjct: 1725 attgcaggatcaggcatgccacgtcctgtaggataccgatagccacg---gccgccccta 1669 Query: 564 cccatcatctgctgctgacccatctgcatggattgctgcattcccccagcaccagctcgc 623 |||||||||| ||||||||||| |||||| |||||||||||| ||||||||||| ||| Sbjct: 1668 gccatcatctgttgctgacccattggcatgggttgctgcattccaccagcaccagcacgc 1609 Query: 624 ctaccagctgggcgttgtggttgttgtccttgctgaancatag 666 |||||||| || || || || |||||||||||||||| ||||| Sbjct: 1608 ctaccagccggacgctgcggctgttgtccttgctgaaccatag 1566
>dbj|AK058314.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-A04, full insert sequence Length = 1208 Score = 452 bits (228), Expect = e-124 Identities = 405/463 (87%), Gaps = 6/463 (1%) Strand = Plus / Minus Query: 207 acctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtgaagc 266 ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||| Sbjct: 914 acctccatggcttcagcaaccttggccttgagagcctctggagactcgagcaggtgcagc 855 Query: 267 acctcggtctggtccatctccagaagcatgccagtaaccttggcagcctggtcgtgctcc 326 ||||| ||||||||||||||||| ||||||||||| ||||| |||||||| || |||||| Sbjct: 854 acctcagtctggtccatctccagcagcatgccagtcaccttcgcagcctgctcatgctcc 795 Query: 327 agctgatcaacaagagggtacaagttctcgccaagcatcattctttgcgtctctgggggt 386 ||||||||||||||||| ||||||||||| |||||||||||||||||| || |||| | Sbjct: 794 agctgatcaacaagaggatacaagttctcaccaagcatcattctttgctgatcaggggct 735 Query: 387 gaattggcaagtgcagaagccaatgccccaattggaactggctgtgacgcaccggcatct 446 | ||||| ||||||| ||||||||| ||||| || || |||||||||||| | |||||| Sbjct: 734 gcgttggccagtgcagtagccaatgctccaataggtacaggctgtgacgcagcagcatct 675 Query: 447 ctcataggcatgcctcccatctcatatggggatgtcatca---cacccccaacaccatgc 503 ||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||| Sbjct: 674 ctcatgggcatgcctcccatctcatatggagatggcatcacaccacccccaacaccatgc 615 Query: 504 atagcaggatcaggcatgccacgcccagttggatagcggtaaccacgaccaccaccccta 563 || |||||||||||||||||||| || || ||||| || || ||||| || |||||| Sbjct: 614 attgcaggatcaggcatgccacgtcctgtaggataccgatagccacg---gccgccccta 558 Query: 564 cccatcatctgctgctgacccatctgcatggattgctgcattcccccagcaccagctcgc 623 |||||||||| ||||||||||| |||||| |||||||||||| ||||||||||| ||| Sbjct: 557 gccatcatctgttgctgacccattggcatgggttgctgcattccaccagcaccagcacgc 498 Query: 624 ctaccagctgggcgttgtggttgttgtccttgctgaancatag 666 |||||||| || || || || |||||||||||||||| ||||| Sbjct: 497 ctaccagccggacgctgcggctgttgtccttgctgaaccatag 455
>dbj|AK058316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-A07, full insert sequence Length = 1482 Score = 444 bits (224), Expect = e-121 Identities = 404/463 (87%), Gaps = 6/463 (1%) Strand = Plus / Minus Query: 207 acctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtgaagc 266 ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||| Sbjct: 1104 acctccatggcttcagcaaccttggccttgagagcctctggagactcgagcaggtgcagc 1045 Query: 267 acctcggtctggtccatctccagaagcatgccagtaaccttggcagcctggtcgtgctcc 326 ||||| ||||||||||||||||| ||||||||||| ||||| |||||||| || |||||| Sbjct: 1044 acctcagtctggtccatctccagcagcatgccagtcaccttcgcagcctgctcatgctcc 985 Query: 327 agctgatcaacaagagggtacaagttctcgccaagcatcattctttgcgtctctgggggt 386 ||||||||||||||||| ||||||||||| ||||||||||| |||||| || |||| | Sbjct: 984 agctgatcaacaagaggatacaagttctcaccaagcatcatcctttgctgatcaggggct 925 Query: 387 gaattggcaagtgcagaagccaatgccccaattggaactggctgtgacgcaccggcatct 446 | ||||| ||||||| ||||||||| ||||| || || |||||||||||| | |||||| Sbjct: 924 gcgttggccagtgcagtagccaatgctccaataggtacaggctgtgacgcagcagcatct 865 Query: 447 ctcataggcatgcctcccatctcatatggggatgtcatca---cacccccaacaccatgc 503 ||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||| Sbjct: 864 ctcatgggcatgcctcccatctcatatggagatggcatcacaccacccccaacaccatgc 805 Query: 504 atagcaggatcaggcatgccacgcccagttggatagcggtaaccacgaccaccaccccta 563 || |||||||||||||||||||| || || ||||| || || ||||| || |||||| Sbjct: 804 attgcaggatcaggcatgccacgtcctgtaggataccgatagccacg---gccgccccta 748 Query: 564 cccatcatctgctgctgacccatctgcatggattgctgcattcccccagcaccagctcgc 623 |||||||||| ||||||||||| |||||| |||||||||||| ||||||||||| ||| Sbjct: 747 gccatcatctgttgctgacccattggcatgggttgctgcattccaccagcaccagcacgc 688 Query: 624 ctaccagctgggcgttgtggttgttgtccttgctgaancatag 666 |||||||| || || || || |||||||||||||||| ||||| Sbjct: 687 ctaccagccggacgctgcggctgttgtccttgctgaaccatag 645
>gb|BT018220.1| Zea mays clone EL01N0561C03.c mRNA sequence Length = 790 Score = 283 bits (143), Expect = 4e-73 Identities = 389/470 (82%), Gaps = 6/470 (1%) Strand = Plus / Minus Query: 200 gcggagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcag 259 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct: 497 gcggagaacctccatggcttcagcaaccttagccttgagagcatctggcgactccagcag 438 Query: 260 gtgaagcacctcggtctggtccatctccagaagcatgccagtaaccttggcagcctggtc 319 |||||| ||||| ||||||||||||| ||||||||||| |||||||||||||| || Sbjct: 437 gtgaagaacctccgtctggtccatcttttaaagcatgccagagaccttggcagcctgctc 378 Query: 320 gtgctccagctgatcaacaagagggtacaagttctcgccaagcatcattctttgcgtctc 379 |||||||||| ||||||||||| |||| | |||| |||||||||| ||||||| || Sbjct: 377 acgctccagctgttcaacaagaggatacagggtctcaccaagcatcagtctttgctgatc 318 Query: 380 tgggggtgaattggcaagtgcagaagccaatgccccaattggaactggctgtgacgcacc 439 ||||| | || ||||| |||| || | ||||||||||||||| || ||||| |||| Sbjct: 317 tggggaggcgttagcaagcgcagtggctagtgccccaattggaacaggttgtgagacacc 258 Query: 440 ggcatctctcataggcatgcctcccatctcatatggggatgtcatcacacccccaacacc 499 ||||||||||| | ||| ||||||||||||||||| |||| ||||||| | |||||| Sbjct: 257 agcatctctcattgccatccctcccatctcatatggagatggcatcacagcaccaacatt 198 Query: 500 atgcatagcaggatcaggcatgccacgcccagttggatagcggtaaccacgaccaccacc 559 |||||| ||||||||||||| ||||| ||||| | ||||||||| ||||||| |||| Sbjct: 197 atgcatgccaggatcaggcattccacgtccagtagcatagcggtagccacgac---cacc 141 Query: 560 cctacccatcatctgctgctgac---ccatctgcatggattgctgcattcccccagcacc 616 ||| | ||||| ||||||| |||| |||||| ||||||||||| |||| || Sbjct: 140 tctagggaatatctgttgctgactacccattggcatgggctgctgcattccaccagaccc 81 Query: 617 agctcgcctaccagctgggcgttgtggttgttgtccttgctgaancatag 666 ||| ||||||||||| || ||||| ||||| ||||| ||||||| ||||| Sbjct: 80 agcacgcctaccagcaggacgttgcggttgctgtccctgctgaaccatag 31 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 agccagctgctgctcggggga 175 ||||||||||||||||||||| Sbjct: 548 agccagctgctgctcggggga 528
>gb|AY103895.1| Zea mays PCO112590 mRNA sequence Length = 1997 Score = 228 bits (115), Expect = 2e-56 Identities = 297/357 (83%), Gaps = 3/357 (0%) Strand = Plus / Minus Query: 200 gcggagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcag 259 |||||| |||||||||||||||||||||||||| || ||||| ||||||||||| ||||| Sbjct: 1591 gcggaggacctccatggcttcagcaaccttggctttcagagcatctggcgactccagcag 1532 Query: 260 gtgaagcacctcggtctggtccatctccagaagcatgccagtaaccttggcagcctggtc 319 |||||| ||||| ||||| |||||||||| |||||||||||| |||||||||||||| || Sbjct: 1531 gtgaagaacctccgtctgatccatctccaaaagcatgccagtgaccttggcagcctgctc 1472 Query: 320 gtgctccagctgatcaacaagagggtacaagttctcgccaagcatcattctttgcgtctc 379 | |||||||| ||||||||||| |||| |||||| |||||||| | ||| ||| || Sbjct: 1471 acgttccagctgttcaacaagaggatacaggttctcaccaagcataagtctctgctgatc 1412 Query: 380 tgggggtgaattggcaagtgcagaagccaatgccccaattggaactggctgtgacgcacc 439 ||| || | || |||||||||| || | |||||||||||||| || || | ||| Sbjct: 1411 tggtggggcgttagcaagtgcagtggctagcgccccaattggaacaggttggggggca-- 1354 Query: 440 ggcatctctcataggcatgcctcccatctcatatggggatgtcatcacacccccaacacc 499 || |||||||| ||||| |||||||||||||||| | || ||||||| | ||||||| Sbjct: 1353 -gcttctctcattggcatccctcccatctcatatgaaggtggcatcacagcaccaacact 1295 Query: 500 atgcatagcaggatcaggcatgccacgcccagttggatagcggtaaccacgaccacc 556 ||||| ||||||||||||| ||||| ||||| |||||||| || ||||||||||| Sbjct: 1294 gtgcatgccaggatcaggcattccacgtccagtaggatagcgatagccacgaccacc 1238 Score = 54.0 bits (27), Expect = 6e-04 Identities = 47/54 (87%) Strand = Plus / Minus Query: 613 caccagctcgcctaccagctgggcgttgtggttgttgtccttgctgaancatag 666 ||||||| || |||||||| || || |||||||| ||||||||||||| ||||| Sbjct: 1187 caccagcacgtctaccagcaggacgctgtggttgctgtccttgctgaaccatag 1134
>ref|XM_481529.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1983 Score = 226 bits (114), Expect = 7e-56 Identities = 389/481 (80%) Strand = Plus / Minus Query: 186 tgctgctgagcgctgcggagaacctccatggcttcagcaaccttggccttgagagcgtct 245 ||||||||||| | |||||||| ||||| || ||||| ||||||||||| ||||| || Sbjct: 1919 tgctgctgagcattacggagaacttccatagcctcagcgaccttggccttaagagcatca 1860 Query: 246 ggcgactcaagcaggtgaagcacctcggtctggtccatctccagaagcatgccagtaacc 305 || ||||||| || || || || || |||||||||||||||| |||||||||||| ||| Sbjct: 1859 ggtgactcaatgagatggagaacttcagtctggtccatctccaaaagcatgccagtgacc 1800 Query: 306 ttggcagcctggtcgtgctccagctgatcaacaagagggtacaagttctcgccaagcatc 365 || || ||||| || |||||||||||||||||||| ||||| || | || ||||||||| Sbjct: 1799 ttcgctgcctgatcatgctccagctgatcaacaagcgggtataaactttcaccaagcatc 1740 Query: 366 attctttgcgtctctgggggtgaattggcaagtgcagaagccaatgccccaattggaact 425 | ||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||| Sbjct: 1739 agtctttgctgatctgggggtgaattggccagtgcagaggccaatgctccaattggaacc 1680 Query: 426 ggctgtgacgcaccggcatctctcataggcatgcctcccatctcatatggggatgtcatc 485 || ||| ||||| ||||| || | |||||| | |||||||||||||||||||| || Sbjct: 1679 tgcggtggtgcaccagcatcactgagaggcattcttcccatctcatatggggatggcact 1620 Query: 486 acacccccaacaccatgcatagcaggatcaggcatgccacgcccagttggatagcggtaa 545 | ||| ||||||||| | | ||| || ||||||||||| |||| | ||| |||||| Sbjct: 1619 aaacctccaacaccacggaatgcattgtctggcatgccacgaccagaagcataacggtaa 1560 Query: 546 ccacgaccaccacccctacccatcatctgctgctgacccatctgcatggattgctgcatt 605 |||| || || |||||| | ||| ||||| || ||||| |||| | |||||| ||| Sbjct: 1559 ccaccacgactaccccttggaagcatttgctggtggcccattggcattggttgctgaatt 1500 Query: 606 cccccagcaccagctcgcctaccagctgggcgttgtggttgttgtccttgctgaancata 665 || |||| || || ||||| |||||||| |||||||||||||| |||||||| | |||| Sbjct: 1499 ccaccagtgcctgcacgccttccagctggacgttgtggttgttgaccttgctggaccata 1440 Query: 666 g 666 | Sbjct: 1439 g 1439
>dbj|AK099783.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096A14, full insert sequence Length = 1416 Score = 226 bits (114), Expect = 7e-56 Identities = 389/481 (80%) Strand = Plus / Minus Query: 186 tgctgctgagcgctgcggagaacctccatggcttcagcaaccttggccttgagagcgtct 245 ||||||||||| | |||||||| ||||| || ||||| ||||||||||| ||||| || Sbjct: 1144 tgctgctgagcattacggagaacttccatagcctcagcgaccttggccttaagagcatca 1085 Query: 246 ggcgactcaagcaggtgaagcacctcggtctggtccatctccagaagcatgccagtaacc 305 || ||||||| || || || || || |||||||||||||||| |||||||||||| ||| Sbjct: 1084 ggtgactcaatgagatggagaacttcagtctggtccatctccaaaagcatgccagtgacc 1025 Query: 306 ttggcagcctggtcgtgctccagctgatcaacaagagggtacaagttctcgccaagcatc 365 || || ||||| || |||||||||||||||||||| ||||| || | || ||||||||| Sbjct: 1024 ttcgctgcctgatcatgctccagctgatcaacaagcgggtataaactttcaccaagcatc 965 Query: 366 attctttgcgtctctgggggtgaattggcaagtgcagaagccaatgccccaattggaact 425 | ||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||| Sbjct: 964 agtctttgctgatctgggggtgaattggccagtgcagaggccaatgctccaattggaacc 905 Query: 426 ggctgtgacgcaccggcatctctcataggcatgcctcccatctcatatggggatgtcatc 485 || ||| ||||| ||||| || | |||||| | |||||||||||||||||||| || Sbjct: 904 tgcggtggtgcaccagcatcactgagaggcattcttcccatctcatatggggatggcact 845 Query: 486 acacccccaacaccatgcatagcaggatcaggcatgccacgcccagttggatagcggtaa 545 | ||| ||||||||| | | ||| || ||||||||||| |||| | ||| |||||| Sbjct: 844 aaacctccaacaccacggaatgcattgtctggcatgccacgaccagaagcataacggtaa 785 Query: 546 ccacgaccaccacccctacccatcatctgctgctgacccatctgcatggattgctgcatt 605 |||| || || |||||| | ||| ||||| || ||||| |||| | |||||| ||| Sbjct: 784 ccaccacgactaccccttggaagcatttgctggtggcccattggcattggttgctgaatt 725 Query: 606 cccccagcaccagctcgcctaccagctgggcgttgtggttgttgtccttgctgaancata 665 || |||| || || ||||| |||||||| |||||||||||||| |||||||| | |||| Sbjct: 724 ccaccagtgcctgcacgccttccagctggacgttgtggttgttgaccttgctggaccata 665 Query: 666 g 666 | Sbjct: 664 g 664
>dbj|AK104792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-F09, full insert sequence Length = 1180 Score = 226 bits (114), Expect = 7e-56 Identities = 389/481 (80%) Strand = Plus / Minus Query: 186 tgctgctgagcgctgcggagaacctccatggcttcagcaaccttggccttgagagcgtct 245 ||||||||||| | |||||||| ||||| || ||||| ||||||||||| ||||| || Sbjct: 933 tgctgctgagcattacggagaacttccatagcctcagcgaccttggccttaagagcatca 874 Query: 246 ggcgactcaagcaggtgaagcacctcggtctggtccatctccagaagcatgccagtaacc 305 || ||||||| || || || || || |||||||||||||||| |||||||||||| ||| Sbjct: 873 ggtgactcaatgagatggagaacttcagtctggtccatctccaaaagcatgccagtgacc 814 Query: 306 ttggcagcctggtcgtgctccagctgatcaacaagagggtacaagttctcgccaagcatc 365 || || ||||| || |||||||||||||||||||| ||||| || | || ||||||||| Sbjct: 813 ttcgctgcctgatcatgctccagctgatcaacaagcgggtataaactttcaccaagcatc 754 Query: 366 attctttgcgtctctgggggtgaattggcaagtgcagaagccaatgccccaattggaact 425 | ||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||| Sbjct: 753 agtctttgctgatctgggggtgaattggccagtgcagaggccaatgctccaattggaacc 694 Query: 426 ggctgtgacgcaccggcatctctcataggcatgcctcccatctcatatggggatgtcatc 485 || ||| ||||| ||||| || | |||||| | |||||||||||||||||||| || Sbjct: 693 tgcggtggtgcaccagcatcactgagaggcattcttcccatctcatatggggatggcact 634 Query: 486 acacccccaacaccatgcatagcaggatcaggcatgccacgcccagttggatagcggtaa 545 | ||| ||||||||| | | ||| || ||||||||||| |||| | ||| |||||| Sbjct: 633 aaacctccaacaccacggaatgcattgtctggcatgccacgaccagaagcataacggtaa 574 Query: 546 ccacgaccaccacccctacccatcatctgctgctgacccatctgcatggattgctgcatt 605 |||| || || |||||| | ||| ||||| || ||||| |||| | |||||| ||| Sbjct: 573 ccaccacgactaccccttggaagcatttgctggtggcccattggcattggttgctgaatt 514 Query: 606 cccccagcaccagctcgcctaccagctgggcgttgtggttgttgtccttgctgaancata 665 || |||| || || ||||| |||||||| |||||||||||||| |||||||| | |||| Sbjct: 513 ccaccagtgcctgcacgccttccagctggacgttgtggttgttgaccttgctggaccata 454 Query: 666 g 666 | Sbjct: 453 g 453
>dbj|AK098867.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A12, full insert sequence Length = 2412 Score = 226 bits (114), Expect = 7e-56 Identities = 389/481 (80%) Strand = Plus / Minus Query: 186 tgctgctgagcgctgcggagaacctccatggcttcagcaaccttggccttgagagcgtct 245 ||||||||||| | |||||||| ||||| || ||||| ||||||||||| ||||| || Sbjct: 2086 tgctgctgagcattacggagaacttccatagcctcagcgaccttggccttaagagcatca 2027 Query: 246 ggcgactcaagcaggtgaagcacctcggtctggtccatctccagaagcatgccagtaacc 305 || ||||||| || || || || || |||||||||||||||| |||||||||||| ||| Sbjct: 2026 ggtgactcaatgagatggagaacttcagtctggtccatctccaaaagcatgccagtgacc 1967 Query: 306 ttggcagcctggtcgtgctccagctgatcaacaagagggtacaagttctcgccaagcatc 365 || || ||||| || |||||||||||||||||||| ||||| || | || ||||||||| Sbjct: 1966 ttcgctgcctgatcatgctccagctgatcaacaagcgggtataaactttcaccaagcatc 1907 Query: 366 attctttgcgtctctgggggtgaattggcaagtgcagaagccaatgccccaattggaact 425 | ||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||| Sbjct: 1906 agtctttgctgatctgggggtgaattggccagtgcagaggccaatgctccaattggaacc 1847 Query: 426 ggctgtgacgcaccggcatctctcataggcatgcctcccatctcatatggggatgtcatc 485 || ||| ||||| ||||| || | |||||| | |||||||||||||||||||| || Sbjct: 1846 tgcggtggtgcaccagcatcactgagaggcattcttcccatctcatatggggatggcact 1787 Query: 486 acacccccaacaccatgcatagcaggatcaggcatgccacgcccagttggatagcggtaa 545 | ||| ||||||||| | | ||| || ||||||||||| |||| | ||| |||||| Sbjct: 1786 aaacctccaacaccacggaatgcattgtctggcatgccacgaccagaagcataacggtaa 1727 Query: 546 ccacgaccaccacccctacccatcatctgctgctgacccatctgcatggattgctgcatt 605 |||| || || |||||| | ||| ||||| || ||||| |||| | |||||| ||| Sbjct: 1726 ccaccacgactaccccttggaagcatttgctggtggcccattggcattggttgctgaatt 1667 Query: 606 cccccagcaccagctcgcctaccagctgggcgttgtggttgttgtccttgctgaancata 665 || |||| || || ||||| |||||||| |||||||||||||| |||||||| | |||| Sbjct: 1666 ccaccagtgcctgcacgccttccagctggacgttgtggttgttgaccttgctggaccata 1607 Query: 666 g 666 | Sbjct: 1606 g 1606
>dbj|AK065167.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002C13, full insert sequence Length = 2387 Score = 226 bits (114), Expect = 7e-56 Identities = 389/481 (80%) Strand = Plus / Minus Query: 186 tgctgctgagcgctgcggagaacctccatggcttcagcaaccttggccttgagagcgtct 245 ||||||||||| | |||||||| ||||| || ||||| ||||||||||| ||||| || Sbjct: 2116 tgctgctgagcattacggagaacttccatagcctcagcgaccttggccttaagagcatca 2057 Query: 246 ggcgactcaagcaggtgaagcacctcggtctggtccatctccagaagcatgccagtaacc 305 || ||||||| || || || || || |||||||||||||||| |||||||||||| ||| Sbjct: 2056 ggtgactcaatgagatggagaacttcagtctggtccatctccaaaagcatgccagtgacc 1997 Query: 306 ttggcagcctggtcgtgctccagctgatcaacaagagggtacaagttctcgccaagcatc 365 || || ||||| || |||||||||||||||||||| ||||| || | || ||||||||| Sbjct: 1996 ttcgctgcctgatcatgctccagctgatcaacaagcgggtataaactttcaccaagcatc 1937 Query: 366 attctttgcgtctctgggggtgaattggcaagtgcagaagccaatgccccaattggaact 425 | ||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||| Sbjct: 1936 agtctttgctgatctgggggtgaattggccagtgcagaggccaatgctccaattggaacc 1877 Query: 426 ggctgtgacgcaccggcatctctcataggcatgcctcccatctcatatggggatgtcatc 485 || ||| ||||| ||||| || | |||||| | |||||||||||||||||||| || Sbjct: 1876 tgcggtggtgcaccagcatcactgagaggcattcttcccatctcatatggggatggcact 1817 Query: 486 acacccccaacaccatgcatagcaggatcaggcatgccacgcccagttggatagcggtaa 545 | ||| ||||||||| | | ||| || ||||||||||| |||| | ||| |||||| Sbjct: 1816 aaacctccaacaccacggaatgcattgtctggcatgccacgaccagaagcataacggtaa 1757 Query: 546 ccacgaccaccacccctacccatcatctgctgctgacccatctgcatggattgctgcatt 605 |||| || || |||||| | ||| ||||| || ||||| |||| | |||||| ||| Sbjct: 1756 ccaccacgactaccccttggaagcatttgctggtggcccattggcattggttgctgaatt 1697 Query: 606 cccccagcaccagctcgcctaccagctgggcgttgtggttgttgtccttgctgaancata 665 || |||| || || ||||| |||||||| |||||||||||||| |||||||| | |||| Sbjct: 1696 ccaccagtgcctgcacgccttccagctggacgttgtggttgttgaccttgctggaccata 1637 Query: 666 g 666 | Sbjct: 1636 g 1636
>dbj|AK060952.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G03, full insert sequence Length = 1208 Score = 226 bits (114), Expect = 7e-56 Identities = 389/481 (80%) Strand = Plus / Minus Query: 186 tgctgctgagcgctgcggagaacctccatggcttcagcaaccttggccttgagagcgtct 245 ||||||||||| | |||||||| ||||| || ||||| ||||||||||| ||||| || Sbjct: 937 tgctgctgagcattacggagaacttccatagcctcagcgaccttggccttaagagcatca 878 Query: 246 ggcgactcaagcaggtgaagcacctcggtctggtccatctccagaagcatgccagtaacc 305 || ||||||| || || || || || |||||||||||||||| |||||||||||| ||| Sbjct: 877 ggtgactcaatgagatggagaacttcagtctggtccatctccaaaagcatgccagtgacc 818 Query: 306 ttggcagcctggtcgtgctccagctgatcaacaagagggtacaagttctcgccaagcatc 365 || || ||||| || |||||||||||||||||||| ||||| || | || ||||||||| Sbjct: 817 ttcgctgcctgatcatgctccagctgatcaacaagcgggtataaactttcaccaagcatc 758 Query: 366 attctttgcgtctctgggggtgaattggcaagtgcagaagccaatgccccaattggaact 425 | ||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||| Sbjct: 757 agtctttgctgatctgggggtgaattggccagtgcagaggccaatgctccaattggaacc 698 Query: 426 ggctgtgacgcaccggcatctctcataggcatgcctcccatctcatatggggatgtcatc 485 || ||| ||||| ||||| || | |||||| | |||||||||||||||||||| || Sbjct: 697 tgcggtggtgcaccagcatcactgagaggcattcttcccatctcatatggggatggcact 638 Query: 486 acacccccaacaccatgcatagcaggatcaggcatgccacgcccagttggatagcggtaa 545 | ||| ||||||||| | | ||| || ||||||||||| |||| | ||| |||||| Sbjct: 637 aaacctccaacaccacggaatgcattgtctggcatgccacgaccagaagcataacggtaa 578 Query: 546 ccacgaccaccacccctacccatcatctgctgctgacccatctgcatggattgctgcatt 605 |||| || || |||||| | ||| ||||| || ||||| |||| | |||||| ||| Sbjct: 577 ccaccacgactaccccttggaagcatttgctggtggcccattggcattggttgctgaatt 518 Query: 606 cccccagcaccagctcgcctaccagctgggcgttgtggttgttgtccttgctgaancata 665 || |||| || || ||||| |||||||| |||||||||||||| |||||||| | |||| Sbjct: 517 ccaccagtgcctgcacgccttccagctggacgttgtggttgttgaccttgctggaccata 458 Query: 666 g 666 | Sbjct: 457 g 457
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 220 bits (111), Expect = 5e-54 Identities = 147/159 (92%) Strand = Plus / Plus Query: 207 acctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtgaagc 266 ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||| Sbjct: 1160054 acctccatggcttcagcaaccttggccttgagagcctctggagactcgagcaggtgcagc 1160113 Query: 267 acctcggtctggtccatctccagaagcatgccagtaaccttggcagcctggtcgtgctcc 326 ||||| ||||||||||||||||| ||||||||||| ||||| |||||||| || |||||| Sbjct: 1160114 acctcagtctggtccatctccagcagcatgccagtcaccttcgcagcctgctcatgctcc 1160173 Query: 327 agctgatcaacaagagggtacaagttctcgccaagcatc 365 ||||||||||||||||| ||||||||||| ||||||||| Sbjct: 1160174 agctgatcaacaagaggatacaagttctcaccaagcatc 1160212 Score = 155 bits (78), Expect = 2e-34 Identities = 125/140 (89%), Gaps = 3/140 (2%) Strand = Plus / Plus Query: 390 ttggcaagtgcagaagccaatgccccaattggaactggctgtgacgcaccggcatctctc 449 ||||| ||||||| ||||||||| ||||| || || |||||||||||| | ||||||||| Sbjct: 1160328 ttggccagtgcagtagccaatgctccaataggtacaggctgtgacgcagcagcatctctc 1160387 Query: 450 ataggcatgcctcccatctcatatggggatgtcatca---cacccccaacaccatgcata 506 || ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| Sbjct: 1160388 atgggcatgcctcccatctcatatggagatggcatcacaccacccccaacaccatgcatt 1160447 Query: 507 gcaggatcaggcatgccacg 526 |||||||||||||||||||| Sbjct: 1160448 gcaggatcaggcatgccacg 1160467 Score = 95.6 bits (48), Expect = 2e-16 Identities = 80/91 (87%) Strand = Plus / Plus Query: 576 tgctgacccatctgcatggattgctgcattcccccagcaccagctcgcctaccagctggg 635 ||||||||||| |||||| |||||||||||| ||||||||||| ||||||||||| || Sbjct: 1160635 tgctgacccattggcatgggttgctgcattccaccagcaccagcacgcctaccagccgga 1160694 Query: 636 cgttgtggttgttgtccttgctgaancatag 666 || || || |||||||||||||||| ||||| Sbjct: 1160695 cgctgcggctgttgtccttgctgaaccatag 1160725
>dbj|AP005569.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1310_F05 Length = 107916 Score = 220 bits (111), Expect = 5e-54 Identities = 147/159 (92%) Strand = Plus / Plus Query: 207 acctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtgaagc 266 ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||| Sbjct: 48648 acctccatggcttcagcaaccttggccttgagagcctctggagactcgagcaggtgcagc 48707 Query: 267 acctcggtctggtccatctccagaagcatgccagtaaccttggcagcctggtcgtgctcc 326 ||||| ||||||||||||||||| ||||||||||| ||||| |||||||| || |||||| Sbjct: 48708 acctcagtctggtccatctccagcagcatgccagtcaccttcgcagcctgctcatgctcc 48767 Query: 327 agctgatcaacaagagggtacaagttctcgccaagcatc 365 ||||||||||||||||| ||||||||||| ||||||||| Sbjct: 48768 agctgatcaacaagaggatacaagttctcaccaagcatc 48806 Score = 155 bits (78), Expect = 2e-34 Identities = 125/140 (89%), Gaps = 3/140 (2%) Strand = Plus / Plus Query: 390 ttggcaagtgcagaagccaatgccccaattggaactggctgtgacgcaccggcatctctc 449 ||||| ||||||| ||||||||| ||||| || || |||||||||||| | ||||||||| Sbjct: 48922 ttggccagtgcagtagccaatgctccaataggtacaggctgtgacgcagcagcatctctc 48981 Query: 450 ataggcatgcctcccatctcatatggggatgtcatca---cacccccaacaccatgcata 506 || ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| Sbjct: 48982 atgggcatgcctcccatctcatatggagatggcatcacaccacccccaacaccatgcatt 49041 Query: 507 gcaggatcaggcatgccacg 526 |||||||||||||||||||| Sbjct: 49042 gcaggatcaggcatgccacg 49061 Score = 95.6 bits (48), Expect = 2e-16 Identities = 80/91 (87%) Strand = Plus / Plus Query: 576 tgctgacccatctgcatggattgctgcattcccccagcaccagctcgcctaccagctggg 635 ||||||||||| |||||| |||||||||||| ||||||||||| ||||||||||| || Sbjct: 49229 tgctgacccattggcatgggttgctgcattccaccagcaccagcacgcctaccagccgga 49288 Query: 636 cgttgtggttgttgtccttgctgaancatag 666 || || || |||||||||||||||| ||||| Sbjct: 49289 cgctgcggctgttgtccttgctgaaccatag 49319
>gb|BT009274.1| Triticum aestivum clone wlk8.pk0015.b12:fis, full insert mRNA sequence Length = 2056 Score = 188 bits (95), Expect = 2e-44 Identities = 194/227 (85%) Strand = Plus / Minus Query: 186 tgctgctgagcgctgcggagaacctccatggcttcagcaaccttggccttgagagcgtct 245 ||||||||||| ||||||||||||||||| |||||||| ||||| | ||| ||||| || Sbjct: 1827 tgctgctgagcactgcggagaacctccatagcttcagcgaccttagacttcagagcatca 1768 Query: 246 ggcgactcaagcaggtgaagcacctcggtctggtccatctccagaagcatgccagtaacc 305 || ||||| | || ||||| |||| ||||||||||||||||||||||| ||||||||| Sbjct: 1767 ggtgactcgattagatgaagggcctcagtctggtccatctccagaagcataccagtaacc 1708 Query: 306 ttggcagcctggtcgtgctccagctgatcaacaagagggtacaagttctcgccaagcatc 365 |||||||||||||| |||||||||||||||||||| ||||||||| | || ||||||||| Sbjct: 1707 ttggcagcctggtcatgctccagctgatcaacaagtgggtacaagctttcaccaagcatc 1648 Query: 366 attctttgcgtctctgggggtgaattggcaagtgcagaagccaatgc 412 | || |||| ||| || || || || ||||||||||| || ||||| Sbjct: 1647 agtcgttgctgctccggcggagagttagcaagtgcagatgctaatgc 1601 Score = 71.9 bits (36), Expect = 3e-09 Identities = 123/152 (80%) Strand = Plus / Minus Query: 507 gcaggatcaggcatgccacgcccagttggatagcggtaaccacgaccaccacccctaccc 566 |||| ||||||||||||||| |||| ||||| ||||| |||| || || ||||| Sbjct: 1506 gcagcatcaggcatgccacggccagacggataacggtagccaccacggccgccccttgga 1447 Query: 567 atcatctgctgctgacccatctgcatggattgctgcattcccccagcaccagctcgccta 626 | ||||||||| |||||||| |||| | ||||||||||| |||||||| || ||||| Sbjct: 1446 accatctgctgatgacccattggcattggctgctgcattccaccagcacctgcgcgcctt 1387 Query: 627 ccagctgggcgttgtggttgttgtccttgctg 658 ||| ||||||||||||||| || |||||||| Sbjct: 1386 ccaaatgggcgttgtggttgctgaccttgctg 1355
>gb|BT024028.1| Zea mays clone EL01N0420H06 mRNA sequence Length = 1123 Score = 184 bits (93), Expect = 2e-43 Identities = 147/165 (89%) Strand = Plus / Minus Query: 200 gcggagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcag 259 |||||| |||||||||||||||||||||||||| || ||||| ||||||||||| ||||| Sbjct: 782 gcggaggacctccatggcttcagcaaccttggctttcagagcatctggcgactccagcag 723 Query: 260 gtgaagcacctcggtctggtccatctccagaagcatgccagtaaccttggcagcctggtc 319 |||||| ||||| ||||| |||||||||| |||||||||||| |||||||||||||| || Sbjct: 722 gtgaagaacctccgtctgatccatctccaaaagcatgccagtgaccttggcagcctgctc 663 Query: 320 gtgctccagctgatcaacaagagggtacaagttctcgccaagcat 364 | |||||||| ||||||||||| |||| |||||| |||||||| Sbjct: 662 acgttccagctgttcaacaagaggatacaggttctcaccaagcat 618 Score = 89.7 bits (45), Expect = 1e-14 Identities = 96/113 (84%) Strand = Plus / Minus Query: 444 tctctcataggcatgcctcccatctcatatggggatgtcatcacacccccaacaccatgc 503 |||||||| ||||| |||||||||||||||| | || ||||||| | ||||||| ||| Sbjct: 541 tctctcattggcatccctcccatctcatatgaaggtggcatcacagcaccaacactgtgc 482 Query: 504 atagcaggatcaggcatgccacgcccagttggatagcggtaaccacgaccacc 556 || ||||||||||||| ||||| ||||| |||||||| || ||||||||||| Sbjct: 481 atgccaggatcaggcattccacgtccagtaggatagcgatagccacgaccacc 429 Score = 54.0 bits (27), Expect = 6e-04 Identities = 47/54 (87%) Strand = Plus / Minus Query: 613 caccagctcgcctaccagctgggcgttgtggttgttgtccttgctgaancatag 666 ||||||| || |||||||| || || |||||||| ||||||||||||| ||||| Sbjct: 378 caccagcacgtctaccagcaggacgctgtggttgctgtccttgctgaaccatag 325
>gb|BT009480.1| Triticum aestivum clone wr1.pk0038.g11:fis, full insert mRNA sequence Length = 844 Score = 125 bits (63), Expect = 2e-25 Identities = 102/115 (88%) Strand = Plus / Plus Query: 199 tgcggagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagca 258 |||||||||| ||||| || || |||||||||| ||||||||| ||||| ||||| |||| Sbjct: 308 tgcggagaacatccatcgcctcggcaaccttggacttgagagcctctggagactcgagca 367 Query: 259 ggtgaagcacctcggtctggtccatctccagaagcatgccagtaaccttggcagc 313 | || |||||||| |||||||||||||||||||||||||| || ||||||||||| Sbjct: 368 gatgcagcacctccgtctggtccatctccagaagcatgccggtcaccttggcagc 422
>gb|AY360385.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0095C12, complete sequence Length = 146632 Score = 121 bits (61), Expect = 3e-24 Identities = 136/161 (84%) Strand = Plus / Minus Query: 186 tgctgctgagcgctgcggagaacctccatggcttcagcaaccttggccttgagagcgtct 245 ||||||||||| | |||||||| ||||| || ||||| ||||||||||| ||||| || Sbjct: 59263 tgctgctgagcattacggagaacttccatagcctcagcgaccttggccttaagagcatca 59204 Query: 246 ggcgactcaagcaggtgaagcacctcggtctggtccatctccagaagcatgccagtaacc 305 || ||||||| || || || || || |||||||||||||||| |||||||||||| ||| Sbjct: 59203 ggtgactcaatgagatggagaacttcagtctggtccatctccaaaagcatgccagtgacc 59144 Query: 306 ttggcagcctggtcgtgctccagctgatcaacaagagggta 346 || || ||||| || |||||||||||||||||||| ||||| Sbjct: 59143 ttcgctgcctgatcatgctccagctgatcaacaagcgggta 59103 Score = 93.7 bits (47), Expect = 7e-16 Identities = 89/103 (86%) Strand = Plus / Minus Query: 378 tctgggggtgaattggcaagtgcagaagccaatgccccaattggaactggctgtgacgca 437 ||||||||||||||||| |||||||| |||||||| ||||||||||| || ||| ||| Sbjct: 58977 tctgggggtgaattggccagtgcagaggccaatgctccaattggaacctgcggtggtgca 58918 Query: 438 ccggcatctctcataggcatgcctcccatctcatatggggatg 480 || ||||| || | |||||| | |||||||||||||||||||| Sbjct: 58917 ccagcatcactgagaggcattcttcccatctcatatggggatg 58875 Score = 56.0 bits (28), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 596 ttgctgcattcccccagcaccagctcgcctaccagctgggcgttgtggttgttgtccttg 655 |||||| ||||| |||| || || ||||| |||||||| |||||||||||||| ||||| Sbjct: 58658 ttgctgaattccaccagtgcctgcacgccttccagctggacgttgtggttgttgaccttg 58599 Query: 656 ctgaancatag 666 ||| | ||||| Sbjct: 58598 ctggaccatag 58588
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 121 bits (61), Expect = 3e-24 Identities = 136/161 (84%) Strand = Plus / Minus Query: 186 tgctgctgagcgctgcggagaacctccatggcttcagcaaccttggccttgagagcgtct 245 ||||||||||| | |||||||| ||||| || ||||| ||||||||||| ||||| || Sbjct: 13471636 tgctgctgagcattacggagaacttccatagcctcagcgaccttggccttaagagcatca 13471577 Query: 246 ggcgactcaagcaggtgaagcacctcggtctggtccatctccagaagcatgccagtaacc 305 || ||||||| || || || || || |||||||||||||||| |||||||||||| ||| Sbjct: 13471576 ggtgactcaatgagatggagaacttcagtctggtccatctccaaaagcatgccagtgacc 13471517 Query: 306 ttggcagcctggtcgtgctccagctgatcaacaagagggta 346 || || ||||| || |||||||||||||||||||| ||||| Sbjct: 13471516 ttcgctgcctgatcatgctccagctgatcaacaagcgggta 13471476 Score = 93.7 bits (47), Expect = 7e-16 Identities = 89/103 (86%) Strand = Plus / Minus Query: 378 tctgggggtgaattggcaagtgcagaagccaatgccccaattggaactggctgtgacgca 437 ||||||||||||||||| |||||||| |||||||| ||||||||||| || ||| ||| Sbjct: 13471350 tctgggggtgaattggccagtgcagaggccaatgctccaattggaacctgcggtggtgca 13471291 Query: 438 ccggcatctctcataggcatgcctcccatctcatatggggatg 480 || ||||| || | |||||| | |||||||||||||||||||| Sbjct: 13471290 ccagcatcactgagaggcattcttcccatctcatatggggatg 13471248 Score = 56.0 bits (28), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 596 ttgctgcattcccccagcaccagctcgcctaccagctgggcgttgtggttgttgtccttg 655 |||||| ||||| |||| || || ||||| |||||||| |||||||||||||| ||||| Sbjct: 13471031 ttgctgaattccaccagtgcctgcacgccttccagctggacgttgtggttgttgaccttg 13470972 Query: 656 ctgaancatag 666 ||| | ||||| Sbjct: 13470971 ctggaccatag 13470961
>dbj|AP005500.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0451H06 Length = 136473 Score = 121 bits (61), Expect = 3e-24 Identities = 136/161 (84%) Strand = Plus / Minus Query: 186 tgctgctgagcgctgcggagaacctccatggcttcagcaaccttggccttgagagcgtct 245 ||||||||||| | |||||||| ||||| || ||||| ||||||||||| ||||| || Sbjct: 9950 tgctgctgagcattacggagaacttccatagcctcagcgaccttggccttaagagcatca 9891 Query: 246 ggcgactcaagcaggtgaagcacctcggtctggtccatctccagaagcatgccagtaacc 305 || ||||||| || || || || || |||||||||||||||| |||||||||||| ||| Sbjct: 9890 ggtgactcaatgagatggagaacttcagtctggtccatctccaaaagcatgccagtgacc 9831 Query: 306 ttggcagcctggtcgtgctccagctgatcaacaagagggta 346 || || ||||| || |||||||||||||||||||| ||||| Sbjct: 9830 ttcgctgcctgatcatgctccagctgatcaacaagcgggta 9790 Score = 93.7 bits (47), Expect = 7e-16 Identities = 89/103 (86%) Strand = Plus / Minus Query: 378 tctgggggtgaattggcaagtgcagaagccaatgccccaattggaactggctgtgacgca 437 ||||||||||||||||| |||||||| |||||||| ||||||||||| || ||| ||| Sbjct: 9664 tctgggggtgaattggccagtgcagaggccaatgctccaattggaacctgcggtggtgca 9605 Query: 438 ccggcatctctcataggcatgcctcccatctcatatggggatg 480 || ||||| || | |||||| | |||||||||||||||||||| Sbjct: 9604 ccagcatcactgagaggcattcttcccatctcatatggggatg 9562 Score = 56.0 bits (28), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 596 ttgctgcattcccccagcaccagctcgcctaccagctgggcgttgtggttgttgtccttg 655 |||||| ||||| |||| || || ||||| |||||||| |||||||||||||| ||||| Sbjct: 9345 ttgctgaattccaccagtgcctgcacgccttccagctggacgttgtggttgttgaccttg 9286 Query: 656 ctgaancatag 666 ||| | ||||| Sbjct: 9285 ctggaccatag 9275
>dbj|AP004228.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1120_B07 Length = 118763 Score = 121 bits (61), Expect = 3e-24 Identities = 136/161 (84%) Strand = Plus / Minus Query: 186 tgctgctgagcgctgcggagaacctccatggcttcagcaaccttggccttgagagcgtct 245 ||||||||||| | |||||||| ||||| || ||||| ||||||||||| ||||| || Sbjct: 108363 tgctgctgagcattacggagaacttccatagcctcagcgaccttggccttaagagcatca 108304 Query: 246 ggcgactcaagcaggtgaagcacctcggtctggtccatctccagaagcatgccagtaacc 305 || ||||||| || || || || || |||||||||||||||| |||||||||||| ||| Sbjct: 108303 ggtgactcaatgagatggagaacttcagtctggtccatctccaaaagcatgccagtgacc 108244 Query: 306 ttggcagcctggtcgtgctccagctgatcaacaagagggta 346 || || ||||| || |||||||||||||||||||| ||||| Sbjct: 108243 ttcgctgcctgatcatgctccagctgatcaacaagcgggta 108203 Score = 93.7 bits (47), Expect = 7e-16 Identities = 89/103 (86%) Strand = Plus / Minus Query: 378 tctgggggtgaattggcaagtgcagaagccaatgccccaattggaactggctgtgacgca 437 ||||||||||||||||| |||||||| |||||||| ||||||||||| || ||| ||| Sbjct: 108077 tctgggggtgaattggccagtgcagaggccaatgctccaattggaacctgcggtggtgca 108018 Query: 438 ccggcatctctcataggcatgcctcccatctcatatggggatg 480 || ||||| || | |||||| | |||||||||||||||||||| Sbjct: 108017 ccagcatcactgagaggcattcttcccatctcatatggggatg 107975 Score = 56.0 bits (28), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 596 ttgctgcattcccccagcaccagctcgcctaccagctgggcgttgtggttgttgtccttg 655 |||||| ||||| |||| || || ||||| |||||||| |||||||||||||| ||||| Sbjct: 107758 ttgctgaattccaccagtgcctgcacgccttccagctggacgttgtggttgttgaccttg 107699 Query: 656 ctgaancatag 666 ||| | ||||| Sbjct: 107698 ctggaccatag 107688
>gb|AF190657.1|AF190657 Nicotiana tabacum clone 7 poly(A)-binding protein (PABP) mRNA, partial cds Length = 1651 Score = 107 bits (54), Expect = 5e-20 Identities = 123/146 (84%) Strand = Plus / Minus Query: 204 agaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtga 263 ||||| ||||| || |||||||| || ||||| ||||| ||||| || |||||||| || Sbjct: 1364 agaacttccatagcctcagcaactttagccttcagagcctctggtgattcaagcagatgc 1305 Query: 264 agcacctcggtctggtccatctccagaagcatgccagtaaccttggcagcctggtcgtgc 323 | ||||| ||||| ||||| || ||||||||||| |||||||| || || || |||||| Sbjct: 1304 aaaacctcagtctgatccatttcaagaagcatgcctgtaacctttgctgcatgctcgtgc 1245 Query: 324 tccagctgatcaacaagagggtacaa 349 ||||||||||||||||| |||||||| Sbjct: 1244 tccagctgatcaacaagtgggtacaa 1219
>gb|AF190656.1|AF190656 Nicotiana tabacum clone 1 poly(A)-binding protein (PABP1) mRNA, partial cds Length = 1231 Score = 93.7 bits (47), Expect = 7e-16 Identities = 95/111 (85%) Strand = Plus / Minus Query: 204 agaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtga 263 ||||||||||| || || ||||||||||| || || || || ||||||||||||| ||| Sbjct: 913 agaacctccatagcctctgcaaccttggctttcagggcttcaggcgactcaagcaagtgc 854 Query: 264 agcacctcggtctggtccatctccagaagcatgccagtaaccttggcagcc 314 | ||||| |||||||||||||||| ||||||||||| |||||||||||| Sbjct: 853 aatacctcagtctggtccatctccaagagcatgccagtcaccttggcagcc 803
>gb|AF190655.1|AF190655 Nicotiana tabacum poly(A)-binding protein (PABP) mRNA, complete cds Length = 2364 Score = 93.7 bits (47), Expect = 7e-16 Identities = 95/111 (85%) Strand = Plus / Minus Query: 204 agaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtga 263 ||||||||||| || || ||||||||||| || || || || ||||||||||||| ||| Sbjct: 2008 agaacctccatagcctctgcaaccttggctttcagggcttcaggcgactcaagcaagtgc 1949 Query: 264 agcacctcggtctggtccatctccagaagcatgccagtaaccttggcagcc 314 | ||||| |||||||||||||||| ||||||||||| |||||||||||| Sbjct: 1948 aatacctcagtctggtccatctccaagagcatgccagtcaccttggcagcc 1898
>gb|BT016789.1| Zea mays clone Contig622 mRNA sequence Length = 1208 Score = 89.7 bits (45), Expect = 1e-14 Identities = 103/121 (85%), Gaps = 1/121 (0%) Strand = Plus / Minus Query: 199 tgcggagaacctccatggcttcagcaa-ccttggccttgagagcgtctggcgactcaagc 257 |||||||||| ||||| || |||||| |||||| ||||||||| || || ||||| ||| Sbjct: 820 tgcggagaacatccattgcctcagcattccttggacttgagagcatcaggggactcgagc 761 Query: 258 aggtgaagcacctcggtctggtccatctccagaagcatgccagtaaccttggcagcctgg 317 ||||| || ||||||||||| |||||||||| |||||| ||||| ||||| ||||| ||| Sbjct: 760 aggtggaggacctcggtctgatccatctccaaaagcattccagtgacctttgcagcttgg 701 Query: 318 t 318 | Sbjct: 700 t 700
>gb|AC148486.17| Medicago truncatula clone mth2-56d23, complete sequence Length = 121459 Score = 89.7 bits (45), Expect = 1e-14 Identities = 87/101 (86%) Strand = Plus / Plus Query: 207 acctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtgaagc 266 |||||||||||||||||||| || ||||||||||| ||||| ||||| | || || | Sbjct: 82896 acctccatggcttcagcaactttagccttgagagcatctggtgactcgatcaaatgcaat 82955 Query: 267 acctcggtctggtccatctccagaagcatgccagtaacctt 307 || || | ||||||||||||||||||||||||||||||||| Sbjct: 82956 acttcaggctggtccatctccagaagcatgccagtaacctt 82996
>ref|XM_473087.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1980 Score = 87.7 bits (44), Expect = 4e-14 Identities = 95/112 (84%) Strand = Plus / Minus Query: 199 tgcggagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagca 258 ||||||| || ||||| || ||||||||||||| ||| ||||| ||||| ||||| |||| Sbjct: 1900 tgcggaggacatccatcgcctcagcaaccttggacttcagagcctctggagactcgagca 1841 Query: 259 ggtgaagcacctcggtctggtccatctccagaagcatgccagtaaccttggc 310 | || || ||||| ||||| ||||||||||||||||| || || |||||||| Sbjct: 1840 gatgcaggacctccgtctgatccatctccagaagcattccggtgaccttggc 1789
>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07, complete sequence Length = 130779 Score = 87.7 bits (44), Expect = 4e-14 Identities = 95/112 (84%) Strand = Plus / Plus Query: 199 tgcggagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagca 258 ||||||| || ||||| || ||||||||||||| ||| ||||| ||||| ||||| |||| Sbjct: 52095 tgcggaggacatccatcgcctcagcaaccttggacttcagagcctctggagactcgagca 52154 Query: 259 ggtgaagcacctcggtctggtccatctccagaagcatgccagtaaccttggc 310 | || || ||||| ||||| ||||||||||||||||| || || |||||||| Sbjct: 52155 gatgcaggacctccgtctgatccatctccagaagcattccggtgaccttggc 52206
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 87.7 bits (44), Expect = 4e-14 Identities = 95/112 (84%) Strand = Plus / Plus Query: 199 tgcggagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagca 258 ||||||| || ||||| || ||||||||||||| ||| ||||| ||||| ||||| |||| Sbjct: 25170428 tgcggaggacatccatcgcctcagcaaccttggacttcagagcctctggagactcgagca 25170487 Query: 259 ggtgaagcacctcggtctggtccatctccagaagcatgccagtaaccttggc 310 | || || ||||| ||||| ||||||||||||||||| || || |||||||| Sbjct: 25170488 gatgcaggacctccgtctgatccatctccagaagcattccggtgaccttggc 25170539
>dbj|AK105555.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-B03, full insert sequence Length = 1647 Score = 87.7 bits (44), Expect = 4e-14 Identities = 95/112 (84%) Strand = Plus / Minus Query: 199 tgcggagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagca 258 ||||||| || ||||| || ||||||||||||| ||| ||||| ||||| ||||| |||| Sbjct: 744 tgcggaggacatccatcgcctcagcaaccttggacttcagagcctctggagactcgagca 685 Query: 259 ggtgaagcacctcggtctggtccatctccagaagcatgccagtaaccttggc 310 | || || ||||| ||||| ||||||||||||||||| || || |||||||| Sbjct: 684 gatgcaggacctccgtctgatccatctccagaagcattccggtgaccttggc 633
>dbj|AK104208.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-B11, full insert sequence Length = 1050 Score = 87.7 bits (44), Expect = 4e-14 Identities = 95/112 (84%) Strand = Plus / Minus Query: 199 tgcggagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagca 258 ||||||| || ||||| || ||||||||||||| ||| ||||| ||||| ||||| |||| Sbjct: 694 tgcggaggacatccatcgcctcagcaaccttggacttcagagcctctggagactcgagca 635 Query: 259 ggtgaagcacctcggtctggtccatctccagaagcatgccagtaaccttggc 310 | || || ||||| ||||| ||||||||||||||||| || || |||||||| Sbjct: 634 gatgcaggacctccgtctgatccatctccagaagcattccggtgaccttggc 583
>dbj|AK067210.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096J03, full insert sequence Length = 2549 Score = 87.7 bits (44), Expect = 4e-14 Identities = 95/112 (84%) Strand = Plus / Minus Query: 199 tgcggagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagca 258 ||||||| || ||||| || ||||||||||||| ||| ||||| ||||| ||||| |||| Sbjct: 2180 tgcggaggacatccatcgcctcagcaaccttggacttcagagcctctggagactcgagca 2121 Query: 259 ggtgaagcacctcggtctggtccatctccagaagcatgccagtaaccttggc 310 | || || ||||| ||||| ||||||||||||||||| || || |||||||| Sbjct: 2120 gatgcaggacctccgtctgatccatctccagaagcattccggtgaccttggc 2069
>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14, complete sequence Length = 150187 Score = 87.7 bits (44), Expect = 4e-14 Identities = 95/112 (84%) Strand = Plus / Plus Query: 199 tgcggagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagca 258 ||||||| || ||||| || ||||||||||||| ||| ||||| ||||| ||||| |||| Sbjct: 117855 tgcggaggacatccatcgcctcagcaaccttggacttcagagcctctggagactcgagca 117914 Query: 259 ggtgaagcacctcggtctggtccatctccagaagcatgccagtaaccttggc 310 | || || ||||| ||||| ||||||||||||||||| || || |||||||| Sbjct: 117915 gatgcaggacctccgtctgatccatctccagaagcattccggtgaccttggc 117966
>gb|AY103944.1| Zea mays PCO133356 mRNA sequence Length = 2499 Score = 83.8 bits (42), Expect = 7e-13 Identities = 90/106 (84%) Strand = Plus / Minus Query: 202 ggagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggt 261 ||||||| ||||| || ||||||||||| | |||||| || || || ||||||||||||| Sbjct: 2099 ggagaacatccatcgcctcagcaacctttgacttgagggcatcaggggactcaagcaggt 2040 Query: 262 gaagcacctcggtctggtccatctccagaagcatgccagtaacctt 307 | || ||||| ||||| |||||||||| |||||| ||||| ||||| Sbjct: 2039 ggaggacctcagtctgatccatctccaaaagcattccagtgacctt 1994
>ref|NM_119572.3| Arabidopsis thaliana PAB2 (POLY(A)-BINDING PROTEIN 2); RNA binding AT4G34110 (PAB2) mRNA, complete cds Length = 2440 Score = 79.8 bits (40), Expect = 1e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 203 gagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtg 262 |||||| ||||| || || ||||| |||||||||||||| ||||| ||||| | ||| || Sbjct: 2177 gagaacatccatagcctctgcaactttggccttgagagcttctggtgactccaacagatg 2118 Query: 263 aagcacctcggtctggtccatctccagaagcatgccagtaaccttggc 310 ||||| || |||||||||||||||| |||||| ||||| || ||||| Sbjct: 2117 gagcacttcagtctggtccatctccaaaagcatcccagtcactttggc 2070
>gb|AC122728.32| Medicago truncatula clone mth2-22l4, complete sequence Length = 102937 Score = 79.8 bits (40), Expect = 1e-11 Identities = 88/104 (84%) Strand = Plus / Plus Query: 210 tccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtgaagcacc 269 |||| ||| |||||||| || | ||||||||| ||||| ||||||| ||| || | |||| Sbjct: 23422 tccacggcctcagcaactttagtcttgagagcctctggtgactcaatcagatgtaacacc 23481 Query: 270 tcggtctggtccatctccagaagcatgccagtaaccttggcagc 313 || | |||||||||||||| |||||| ||||||||||| ||||| Sbjct: 23482 tcaggctggtccatctccaaaagcataccagtaacctttgcagc 23525
>gb|AY080718.1| Arabidopsis thaliana putative poly(A)-binding protein (At4g34110) mRNA, partial cds Length = 2033 Score = 79.8 bits (40), Expect = 1e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 203 gagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtg 262 |||||| ||||| || || ||||| |||||||||||||| ||||| ||||| | ||| || Sbjct: 1785 gagaacatccatagcctctgcaactttggccttgagagcttctggtgactccaacagatg 1726 Query: 263 aagcacctcggtctggtccatctccagaagcatgccagtaaccttggc 310 ||||| || |||||||||||||||| |||||| ||||| || ||||| Sbjct: 1725 gagcacttcagtctggtccatctccaaaagcatcccagtcactttggc 1678
>emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 80 Length = 192861 Score = 79.8 bits (40), Expect = 1e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 203 gagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtg 262 |||||| ||||| || || ||||| |||||||||||||| ||||| ||||| | ||| || Sbjct: 173392 gagaacatccatagcctctgcaactttggccttgagagcttctggtgactccaacagatg 173333 Query: 263 aagcacctcggtctggtccatctccagaagcatgccagtaaccttggc 310 ||||| || |||||||||||||||| |||||| ||||| || ||||| Sbjct: 173332 gagcacttcagtctggtccatctccaaaagcatcccagtcactttggc 173285
>emb|AL021961.2|ATF28A23 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A23 (ESSA project) Length = 94091 Score = 79.8 bits (40), Expect = 1e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 203 gagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtg 262 |||||| ||||| || || ||||| |||||||||||||| ||||| ||||| | ||| || Sbjct: 43343 gagaacatccatagcctctgcaactttggccttgagagcttctggtgactccaacagatg 43284 Query: 263 aagcacctcggtctggtccatctccagaagcatgccagtaaccttggc 310 ||||| || |||||||||||||||| |||||| ||||| || ||||| Sbjct: 43283 gagcacttcagtctggtccatctccaaaagcatcccagtcactttggc 43236
>dbj|AK222061.1| Arabidopsis thaliana mRNA for poly(A)-binding protein, complete cds, clone: RAFL22-79-P19 Length = 624 Score = 79.8 bits (40), Expect = 1e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 203 gagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtg 262 |||||| ||||| || || ||||| |||||||||||||| ||||| ||||| | ||| || Sbjct: 389 gagaacatccatagcctctgcaactttggccttgagagcttctggtgactccaacagatg 330 Query: 263 aagcacctcggtctggtccatctccagaagcatgccagtaaccttggc 310 ||||| || |||||||||||||||| |||||| ||||| || ||||| Sbjct: 329 gagcacttcagtctggtccatctccaaaagcatcccagtcactttggc 282
>emb|BX828392.1|CNS0A2YR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH83ZH02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 723 Score = 79.8 bits (40), Expect = 1e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 203 gagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtg 262 |||||| ||||| || || ||||| |||||||||||||| ||||| ||||| | ||| || Sbjct: 513 gagaacatccatagcctctgcaactttggccttgagagcttctggtgactccaacagatg 454 Query: 263 aagcacctcggtctggtccatctccagaagcatgccagtaaccttggc 310 ||||| || |||||||||||||||| |||||| ||||| || ||||| Sbjct: 453 gagcacttcagtctggtccatctccaaaagcatcccagtcactttggc 406
>emb|BX827355.1|CNS0A2W2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS43ZH05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1567 Score = 79.8 bits (40), Expect = 1e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 203 gagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtg 262 |||||| ||||| || || ||||| |||||||||||||| ||||| ||||| | ||| || Sbjct: 1354 gagaacatccatagcctctgcaactttggccttgagagcttctggtgactccaacagatg 1295 Query: 263 aagcacctcggtctggtccatctccagaagcatgccagtaaccttggc 310 ||||| || |||||||||||||||| |||||| ||||| || ||||| Sbjct: 1294 gagcacttcagtctggtccatctccaaaagcatcccagtcactttggc 1247
>gb|BT002354.1| Arabidopsis thaliana clone C104970 putative polyadenylate-binding protein 2 (PABP2) (At4g34110) mRNA, complete cds Length = 1921 Score = 79.8 bits (40), Expect = 1e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 203 gagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtg 262 |||||| ||||| || || ||||| |||||||||||||| ||||| ||||| | ||| || Sbjct: 1833 gagaacatccatagcctctgcaactttggccttgagagcttctggtgactccaacagatg 1774 Query: 263 aagcacctcggtctggtccatctccagaagcatgccagtaaccttggc 310 ||||| || |||||||||||||||| |||||| ||||| || ||||| Sbjct: 1773 gagcacttcagtctggtccatctccaaaagcatcccagtcactttggc 1726
>gb|L19418.1|ATHPAB2A Arabidopsis thaliana poly(A)-binding protein mRNA, complete cds Length = 2427 Score = 79.8 bits (40), Expect = 1e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 203 gagaacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtg 262 |||||| ||||| || || ||||| |||||||||||||| ||||| ||||| | ||| || Sbjct: 2164 gagaacatccatagcctctgcaactttggccttgagagcttctggtgactccaacagatg 2105 Query: 263 aagcacctcggtctggtccatctccagaagcatgccagtaaccttggc 310 ||||| || |||||||||||||||| |||||| ||||| || ||||| Sbjct: 2104 gagcacttcagtctggtccatctccaaaagcatcccagtcactttggc 2057
>gb|AC136449.21| Medicago truncatula clone mth2-11k13, complete sequence Length = 112369 Score = 73.8 bits (37), Expect = 7e-10 Identities = 73/85 (85%) Strand = Plus / Minus Query: 243 tctggcgactcaagcaggtgaagcacctcggtctggtccatctccagaagcatgccagta 302 ||||| ||||| |||| ||| || || || ||||||||||||||||||||||| |||||| Sbjct: 59809 tctggtgactcgagcaagtgcagaacttcagtctggtccatctccagaagcataccagta 59750 Query: 303 accttggcagcctggtcgtgctcca 327 || |||||||| | |||| |||||| Sbjct: 59749 actttggcagcattgtcgggctcca 59725
>gb|AC148528.15| Medicago truncatula clone mth2-53h4, complete sequence Length = 141776 Score = 73.8 bits (37), Expect = 7e-10 Identities = 73/85 (85%) Strand = Plus / Minus Query: 243 tctggcgactcaagcaggtgaagcacctcggtctggtccatctccagaagcatgccagta 302 ||||| ||||| |||| ||| || || || ||||||||||||||||||||||| |||||| Sbjct: 2837 tctggtgactcgagcaagtgcagaacttcagtctggtccatctccagaagcataccagta 2778 Query: 303 accttggcagcctggtcgtgctcca 327 || |||||||| | |||| |||||| Sbjct: 2777 actttggcagcattgtcgggctcca 2753
>gb|AF003126.1|AF003126 Mesembryanthemum crystallinum poly(A)-binding protein mRNA, partial cds Length = 754 Score = 65.9 bits (33), Expect = 2e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 210 tccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtgaagcacc 269 ||||| || ||||||||||||| |||||| || ||||| ||||| |||| ||| |||||| Sbjct: 428 tccattgcctcagcaaccttggacttgagcgcttctggagactcgagcaagtgcagcacc 369 Query: 270 tcggtctggtccatctc 286 || ||||| |||||||| Sbjct: 368 tcagtctgatccatctc 352
>gb|AY389552.1| Hyacinthus orientalis poly(A)-binding protein (PABP) mRNA, partial cds Length = 660 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 267 acctcggtctggtccatctccagaagcatgccagtaaccttggcagc 313 ||||||||||||||||||||||||||||| || || || |||||||| Sbjct: 237 acctcggtctggtccatctccagaagcatccccgtcactttggcagc 191
>ref|XM_364660.1| Magnaporthe grisea 70-15 hypothetical protein (MG09505.4) partial mRNA Length = 2289 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 278 gtccatctccagaagcatgccagtaaccttg 308 |||||||||||||||||||||||||| |||| Sbjct: 2133 gtccatctccagaagcatgccagtaatcttg 2103
>ref|NM_127899.2| Arabidopsis thaliana PAB4; RNA binding / translation initiation factor AT2G23350 (PAB4) mRNA, complete cds Length = 2371 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 228 ttggccttgagagcgtctggcgactcaagcaggtgaagcacctcggtctggtccatctcc 287 ||||| || ||||| ||||| ||||| ||||| || | ||||||||||| ||||| ||| Sbjct: 2021 ttggcatttagagcctctggtgactcgagcagatgcaaaacctcggtctgatccatttcc 1962 Query: 288 agaagcatgccagt 301 |||||||| ||||| Sbjct: 1961 agaagcataccagt 1948
>gb|AY079389.1| Arabidopsis thaliana putative poly(A) binding protein (At2g23350) mRNA, complete cds Length = 2020 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 228 ttggccttgagagcgtctggcgactcaagcaggtgaagcacctcggtctggtccatctcc 287 ||||| || ||||| ||||| ||||| ||||| || | ||||||||||| ||||| ||| Sbjct: 1865 ttggcatttagagcctctggtgactcgagcagatgcaaaacctcggtctgatccatttcc 1806 Query: 288 agaagcatgccagt 301 |||||||| ||||| Sbjct: 1805 agaagcataccagt 1792
>gb|AY050859.1| Arabidopsis thaliana putative poly(A) binding protein (At2g23350) mRNA, complete cds Length = 2337 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 228 ttggccttgagagcgtctggcgactcaagcaggtgaagcacctcggtctggtccatctcc 287 ||||| || ||||| ||||| ||||| ||||| || | ||||||||||| ||||| ||| Sbjct: 2019 ttggcatttagagcctctggtgactcgagcagatgcaaaacctcggtctgatccatttcc 1960 Query: 288 agaagcatgccagt 301 |||||||| ||||| Sbjct: 1959 agaagcataccagt 1946
>gb|AF360217.1| Arabidopsis thaliana putative poly(A) binding protein (At2g23350) mRNA, complete cds Length = 2385 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 228 ttggccttgagagcgtctggcgactcaagcaggtgaagcacctcggtctggtccatctcc 287 ||||| || ||||| ||||| ||||| ||||| || | ||||||||||| ||||| ||| Sbjct: 2018 ttggcatttagagcctctggtgactcgagcagatgcaaaacctcggtctgatccatttcc 1959 Query: 288 agaagcatgccagt 301 |||||||| ||||| Sbjct: 1958 agaagcataccagt 1945
>gb|AC002391.3| Arabidopsis thaliana chromosome 2 clone T20D16 map CIC06C07, complete sequence Length = 108881 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 228 ttggccttgagagcgtctggcgactcaagcaggtgaagcacctcggtctggtccatctcc 287 ||||| || ||||| ||||| ||||| ||||| || | ||||||||||| ||||| ||| Sbjct: 5520 ttggcatttagagcctctggtgactcgagcagatgcaaaacctcggtctgatccatttcc 5579 Query: 288 agaagcatgccagt 301 |||||||| ||||| Sbjct: 5580 agaagcataccagt 5593
>dbj|AK221946.1| Arabidopsis thaliana mRNA for putative poly(A) binding protein, complete cds, clone: RAFL22-47-D09 Length = 694 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 228 ttggccttgagagcgtctggcgactcaagcaggtgaagcacctcggtctggtccatctcc 287 ||||| || ||||| ||||| ||||| ||||| || | ||||||||||| ||||| ||| Sbjct: 353 ttggcatttagagcctctggtgactcgagcagatgcaaaacctcggtctgatccatttcc 294 Query: 288 agaagcatgccagt 301 |||||||| ||||| Sbjct: 293 agaagcataccagt 280
>emb|BX821408.1|CNS0A7X8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL3ZB01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 712 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 228 ttggccttgagagcgtctggcgactcaagcaggtgaagcacctcggtctggtccatctcc 287 ||||| || ||||| ||||| ||||| ||||| || | ||||||||||| ||||| ||| Sbjct: 408 ttggcatttagagcctctggtgactcgagcagatgcaaaacctcggtctgatccatttcc 349 Query: 288 agaagcatgccagt 301 |||||||| ||||| Sbjct: 348 agaagcataccagt 335
>gb|AF240679.1|AF240679 Cucumis sativus poly(A)-binding protein mRNA, complete cds Length = 2603 Score = 50.1 bits (25), Expect = 0.009 Identities = 85/105 (80%) Strand = Plus / Minus Query: 206 aacctccatggcttcagcaaccttggccttgagagcgtctggcgactcaagcaggtgaag 265 ||||||||| ||||| || ||||| || || ||||| || ||||||||||||| || || Sbjct: 2266 aacctccattgcttccgccaccttagctttcagagcttcgggcgactcaagcaaatgtag 2207 Query: 266 cacctcggtctggtccatctccagaagcatgccagtaaccttggc 310 ||||| || |||||||| |||| ||||| || || |||||||| Sbjct: 2206 aacctcagtttggtccatttccaatagcattcctgttaccttggc 2162
>ref|XM_816516.1| Trypanosoma cruzi strain CL Brener poly(A)-binding protein (Tc00.1047053508461.140) partial mRNA Length = 1653 Score = 48.1 bits (24), Expect = 0.037 Identities = 33/36 (91%) Strand = Plus / Minus Query: 279 tccatctccagaagcatgccagtaaccttggcagcc 314 |||||||||| |||||||||||| ||||| |||||| Sbjct: 1556 tccatctccaaaagcatgccagtcacctttgcagcc 1521
>gb|U11272.1|TCU11272 Trypanosoma cruzi clone 22 poly(A) binding protein mRNA, complete cds Length = 2103 Score = 48.1 bits (24), Expect = 0.037 Identities = 33/36 (91%) Strand = Plus / Minus Query: 279 tccatctccagaagcatgccagtaaccttggcagcc 314 |||||||||| |||||||||||| ||||| |||||| Sbjct: 1792 tccatctccaaaagcatgccagtcacctttgcagcc 1757
>gb|U06070.1|TCU06070 Trypanosoma cruzi Tulahuen poly(A) binding protein mRNA, complete cds Length = 2013 Score = 48.1 bits (24), Expect = 0.037 Identities = 33/36 (91%) Strand = Plus / Minus Query: 279 tccatctccagaagcatgccagtaaccttggcagcc 314 |||||||||| |||||||||||| ||||| |||||| Sbjct: 1704 tccatctccaaaagcatgccagtcacctttgcagcc 1669
>gb|AF044733.1|AF044733 Trypanosoma cruzi clone B1k poly(A)-binding protein (PABP) gene, complete cds Length = 4292 Score = 48.1 bits (24), Expect = 0.037 Identities = 33/36 (91%) Strand = Plus / Minus Query: 279 tccatctccagaagcatgccagtaaccttggcagcc 314 |||||||||| |||||||||||| ||||| |||||| Sbjct: 3916 tccatctccaaaagcatgccagtcacctttgcagcc 3881
>gb|AF044732.1|AF044732 Trypanosoma cruzi clone A6a poly(A)-binding protein (PABP) gene, complete cds Length = 6055 Score = 48.1 bits (24), Expect = 0.037 Identities = 33/36 (91%) Strand = Plus / Minus Query: 279 tccatctccagaagcatgccagtaaccttggcagcc 314 |||||||||| |||||||||||| ||||| |||||| Sbjct: 2198 tccatctccaaaagcatgccagtcacctttgcagcc 2163
>ref|XM_804180.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508443.60) partial mRNA Length = 3012 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 347 caagttctcgccaagcatcattc 369 ||||||||||||||||||||||| Sbjct: 1057 caagttctcgccaagcatcattc 1035
>ref|XM_812543.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509157.120) partial mRNA Length = 3156 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 347 caagttctcgccaagcatcattc 369 ||||||||||||||||||||||| Sbjct: 1057 caagttctcgccaagcatcattc 1035
>gb|AC103740.2| Homo sapiens chromosome 15, clone RP11-1069G10, complete sequence Length = 182071 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 617 agctcgcctaccagctgggcgttgtgg 643 ||||||||||||||||||||| ||||| Sbjct: 30822 agctcgcctaccagctgggcgctgtgg 30796
>gb|AC068233.11| Homo sapiens chromosome 15, clone RP11-169M2, complete sequence Length = 177483 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 617 agctcgcctaccagctgggcgttgtgg 643 ||||||||||||||||||||| ||||| Sbjct: 131900 agctcgcctaccagctgggcgctgtgg 131874
>ref|XM_516680.1| PREDICTED: Pan troglodytes similar to DNA polymerase theta (LOC460619), mRNA Length = 4007 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 54 aaataaaccaagtcattttcag 75 |||||||||||||||||||||| Sbjct: 1475 aaataaaccaagtcattttcag 1496
>ref|NM_199420.2| Homo sapiens polymerase (DNA directed), theta (POLQ), mRNA Length = 8790 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 54 aaataaaccaagtcattttcag 75 |||||||||||||||||||||| Sbjct: 3843 aaataaaccaagtcattttcag 3864
>ref|XM_656512.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4000.2), mRNA Length = 2136 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 278 gtccatctccagaagcatgccagtaa 303 |||||||||||||||||| ||||||| Sbjct: 2031 gtccatctccagaagcataccagtaa 2006
>gb|AY338826.2| Homo sapiens DNA polymerase theta (POLQ) mRNA, complete cds Length = 8775 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 54 aaataaaccaagtcattttcag 75 |||||||||||||||||||||| Sbjct: 3867 aaataaaccaagtcattttcag 3888
>emb|CR936627.1| Homo sapiens mRNA; cDNA DKFZp781A0112 (from clone DKFZp781A0112) Length = 10778 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 54 aaataaaccaagtcattttcag 75 |||||||||||||||||||||| Sbjct: 5917 aaataaaccaagtcattttcag 5938
>gb|AC079841.10| Homo sapiens 3 BAC RP11-10G15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167865 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 54 aaataaaccaagtcattttcag 75 |||||||||||||||||||||| Sbjct: 146915 aaataaaccaagtcattttcag 146894
>gb|BC034254.1| Homo sapiens, clone IMAGE:3866451, mRNA Length = 2410 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 54 aaataaaccaagtcattttcag 75 |||||||||||||||||||||| Sbjct: 2234 aaataaaccaagtcattttcag 2255
>gb|AY030359.1| Anemia phyllitidis polyadenylated mRNA-binding protein 2 (Pab2) mRNA, partial cds Length = 1609 Score = 44.1 bits (22), Expect = 0.58 Identities = 43/50 (86%) Strand = Plus / Minus Query: 246 ggcgactcaagcaggtgaagcacctcggtctggtccatctccagaagcat 295 |||||||||| ||||| || ||||| ||||||||||| || |||||||| Sbjct: 1289 ggcgactcaatgaggtgtagaacctctgtctggtccatttctagaagcat 1240
>gb|AY032677.1| Homo sapiens DNA polymerase theta (POLQ) mRNA, complete cds Length = 9061 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 54 aaataaaccaagtcattttcag 75 |||||||||||||||||||||| Sbjct: 4140 aaataaaccaagtcattttcag 4161
>gb|AF052573.1|AF052573 Homo sapiens DNA polymerase theta (POLQ) mRNA, complete cds Length = 6588 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 54 aaataaaccaagtcattttcag 75 |||||||||||||||||||||| Sbjct: 1667 aaataaaccaagtcattttcag 1688
>dbj|AB209867.1| Homo sapiens mRNA for DNA polymerase theta variant protein Length = 8507 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 54 aaataaaccaagtcattttcag 75 |||||||||||||||||||||| Sbjct: 3794 aaataaaccaagtcattttcag 3815
>gb|U70731.1|ENU70731 Emericella nidulans putative poly(A)-binding protein (fabM) gene, complete cds Length = 3076 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 278 gtccatctccagaagcatgccagtaa 303 |||||||||||||||||| ||||||| Sbjct: 2665 gtccatctccagaagcataccagtaa 2640
>gb|DQ098923.1| Giardia intestinalis clone KI1170 subtelomeric region (STR) 3 sequence Length = 2172 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 604 ttcccccagcaccagctcgcc 624 ||||||||||||||||||||| Sbjct: 1798 ttcccccagcaccagctcgcc 1818
>gb|AY596505.1| Helicosporidium sp. ex Simulium jonesii polyadenylate binding protein mRNA, partial cds Length = 487 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 278 gtccatctccagaagcatgcc 298 ||||||||||||||||||||| Sbjct: 171 gtccatctccagaagcatgcc 151
>gb|BT015312.1| Drosophila melanogaster AT04807 full insert cDNA Length = 4867 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 569 catctgctgctgacccatctg 589 ||||||||||||||||||||| Sbjct: 4196 catctgctgctgacccatctg 4176
>emb|Z84574.1|CEF33E2 Caenorhabditis elegans Cosmid F33E2, complete sequence Length = 26154 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 544 aaccacgaccaccacccctac 564 ||||||||||||||||||||| Sbjct: 17250 aaccacgaccaccacccctac 17270
>ref|XM_745074.1| Aspergillus fumigatus Af293 polyadenylate-binding protein (Afu1g04190) partial mRNA Length = 2262 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 278 gtccatctccagaagcatgccagtaaccttggcagcc 314 |||||||||||||||||| ||||| | |||| ||||| Sbjct: 2085 gtccatctccagaagcataccagtgatcttgccagcc 2049
>emb|AL645950.13| Mouse DNA sequence from clone RP23-13C17 on chromosome 1 Contains the Eef1b2 gene for eukaryotic translation elongation factor 1 beta 2, the Ndufs1 gene for NADH dehydrogenase (ubiquinone) Fe-S protein 1 (Ndufs1), the Gpr1 gene for G-protein coupled receptor 1, the 5' end of a novel gene, two novel genes and two CpG islands, complete sequence Length = 138564 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 aaataaaccaagtcattttca 74 ||||||||||||||||||||| Sbjct: 52364 aaataaaccaagtcattttca 52384
>gb|AF440196.1| Giardia intestinalis non-LTR retrotransposon GENIE 1 pol polyprotein gene, complete cds Length = 3988 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 604 ttcccccagcaccagctcgcc 624 ||||||||||||||||||||| Sbjct: 3951 ttcccccagcaccagctcgcc 3931
>ref|NM_169654.2| Drosophila melanogaster CG31302-RC, transcript variant C (CG31302), mRNA Length = 5108 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 569 catctgctgctgacccatctg 589 ||||||||||||||||||||| Sbjct: 4446 catctgctgctgacccatctg 4426
>ref|NM_169653.2| Drosophila melanogaster CG31302-RB, transcript variant B (CG31302), mRNA Length = 4919 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 569 catctgctgctgacccatctg 589 ||||||||||||||||||||| Sbjct: 4257 catctgctgctgacccatctg 4237
>ref|NM_169652.2| Drosophila melanogaster CG31302-RA, transcript variant A (CG31302), mRNA Length = 4949 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 569 catctgctgctgacccatctg 589 ||||||||||||||||||||| Sbjct: 4287 catctgctgctgacccatctg 4267
>ref|NM_001026275.1| Caenorhabditis elegans F33E2.7 (F33E2.7) mRNA, complete cds Length = 525 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 544 aaccacgaccaccacccctac 564 ||||||||||||||||||||| Sbjct: 351 aaccacgaccaccacccctac 371
>gb|AF434198.1| Giardia intestinalis GiRE1 retrotransposon reverse transcriptase gene, complete cds Length = 4704 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 604 ttcccccagcaccagctcgcc 624 ||||||||||||||||||||| Sbjct: 3717 ttcccccagcaccagctcgcc 3697
>gb|AF433875.1| Giardia intestinalis non-LTR LINE-like retrotransposon GilM, complete sequence Length = 5470 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 604 ttcccccagcaccagctcgcc 624 ||||||||||||||||||||| Sbjct: 3702 ttcccccagcaccagctcgcc 3682
>tpg|BK000095.1| TPA: TPA_exp: Giardia intestinalis non-LTR retrotransposon Genie 1 gene, partial sequence Length = 4704 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 604 ttcccccagcaccagctcgcc 624 ||||||||||||||||||||| Sbjct: 3717 ttcccccagcaccagctcgcc 3697
>dbj|AK017924.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830412M15 product:unclassifiable, full insert sequence Length = 1577 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 aaataaaccaagtcattttca 74 ||||||||||||||||||||| Sbjct: 626 aaataaaccaagtcattttca 646
>gb|AC007648.6|AC007648 Drosophila melanogaster, chromosome 3R, region 88E-88F, BAC clone BACR13A02, complete sequence Length = 166141 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 569 catctgctgctgacccatctg 589 ||||||||||||||||||||| Sbjct: 158406 catctgctgctgacccatctg 158386
>gb|AC007769.3|AC007769 Drosophila melanogaster, chromosome 3R, region 88F-88F, BAC clone BACR17K19, complete sequence Length = 167918 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 569 catctgctgctgacccatctg 589 ||||||||||||||||||||| Sbjct: 58500 catctgctgctgacccatctg 58480
>dbj|AK110296.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-H06, full insert sequence Length = 3118 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 278 gtccatctccagaagcatgcc 298 ||||||||||||||||||||| Sbjct: 2404 gtccatctccagaagcatgcc 2384
>gb|AE003708.3| Drosophila melanogaster chromosome 3R, section 46 of 118 of the complete sequence Length = 236375 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 569 catctgctgctgacccatctg 589 ||||||||||||||||||||| Sbjct: 202838 catctgctgctgacccatctg 202818
>gb|AF043297.1|AF043297 Chlamydomonas reinhardtii poly(A) binding protein RB47 (PABP) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 2846 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Minus Query: 278 gtccatctccagaagcatgccagtaaccttggcagcctggtcgtgctccagct 330 |||||||||||| |||||||| || | |||| ||||| ||||| ||| ||||| Sbjct: 1954 gtccatctccagcagcatgccggtgatcttgccagccaggtcgggctgcagct 1902
>gb|AC154684.2| Mus musculus BAC clone RP23-143E1 from 12, complete sequence Length = 219213 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 278 gtccatctccagaagcatgcc 298 ||||||||||||||||||||| Sbjct: 60496 gtccatctccagaagcatgcc 60516
>gb|AF349964.1| Daucus carota poly(A)-binding protein mRNA, complete cds Length = 2491 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 gcaagtgcagaagccaatgc 412 |||||||||||||||||||| Sbjct: 1928 gcaagtgcagaagccaatgc 1909
>ref|NM_112106.3| Arabidopsis thaliana pepsin A AT3G12700 mRNA, complete cds Length = 1543 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 573 tgctgctgacccatctgcat 592 |||||||||||||||||||| Sbjct: 657 tgctgctgacccatctgcat 638
>ref|XM_953886.1| Neurospora crassa OR74A hypothetical protein (NCU09032.1) partial mRNA Length = 2835 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 540 cggtaaccacgaccaccacc 559 |||||||||||||||||||| Sbjct: 2612 cggtaaccacgaccaccacc 2631
>ref|XM_331423.1| Neurospora crassa OR74A hypothetical protein (NCU09032.1) partial mRNA Length = 2835 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 540 cggtaaccacgaccaccacc 559 |||||||||||||||||||| Sbjct: 2612 cggtaaccacgaccaccacc 2631
>ref|XM_658356.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5844.2), mRNA Length = 489 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gtccatctccagaagcatgc 297 |||||||||||||||||||| Sbjct: 318 gtccatctccagaagcatgc 299
>gb|AY528719.1| Homo sapiens estrogen-related receptor gamma (ESRRG) gene, complete cds Length = 590284 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 taagtctcaaataaaccaag 65 |||||||||||||||||||| Sbjct: 239456 taagtctcaaataaaccaag 239475
>gb|AC115738.9| Mus musculus chromosome 3, clone RP23-474P24, complete sequence Length = 188507 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 492 ccaacaccatgcatagcaggatca 515 ||||||||| |||||||||||||| Sbjct: 96300 ccaacaccacgcatagcaggatca 96323
>gb|AC133100.5| Mus musculus BAC clone RP23-98O11 from chromosome 19, complete sequence Length = 204855 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 cattcccccagcaccagctc 621 |||||||||||||||||||| Sbjct: 128054 cattcccccagcaccagctc 128035
>gb|AC122836.4| Mus musculus BAC clone RP23-188B13 from 7, complete sequence Length = 222390 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 aatgccccaattggaactgg 427 |||||||||||||||||||| Sbjct: 76694 aatgccccaattggaactgg 76675
>emb|AL805915.9| Human DNA sequence from clone RP11-118H17 on chromosome 10 Contains a novel gene, complete sequence Length = 103488 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 205 gaacctccatggcttcagcaacct 228 |||||||||||| ||||||||||| Sbjct: 101643 gaacctccatgggttcagcaacct 101666
>emb|AL603752.6| Human DNA sequence from clone RP11-296A1 on chromosome 1 Contains part of the ESRRG gene for estrogen-related receptor gamma, complete sequence Length = 48868 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 taagtctcaaataaaccaag 65 |||||||||||||||||||| Sbjct: 33894 taagtctcaaataaaccaag 33875
>emb|AL589741.11| Human DNA sequence from clone RP11-372M18 on chromosome 1 Contains a novel gene and the 5' end of a novel gene, complete sequence Length = 159331 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 113 tttagctcaggaagagatgaggccgtca 140 ||||||||||||||| ||||||| |||| Sbjct: 128584 tttagctcaggaagacatgaggcagtca 128557
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 618 gctcgcctaccagctgggcg 637 |||||||||||||||||||| Sbjct: 410947 gctcgcctaccagctgggcg 410928
>emb|AL158835.11| Human DNA sequence from clone RP11-383C5 on chromosome 10 Contains a aldolase A, fructose-bisphosphate pseudogene 2, four novel genes, the gene for erythroid differentiation-related factor 1 (EDRF1), the 3' end of the MMP21 gene for matrix metalloproteinase 21 and one CpG island, complete sequence Length = 174530 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 205 gaacctccatggcttcagcaacct 228 |||||||||||| ||||||||||| Sbjct: 155 gaacctccatgggttcagcaacct 178
>emb|AL020993.1|HS5O6 Human DNA sequence from clone RP1-5O6 on chromosome 22q12, complete sequence Length = 106008 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 597 tgctgcattcccccagcacc 616 |||||||||||||||||||| Sbjct: 66147 tgctgcattcccccagcacc 66166
>gb|AY070426.1| Arabidopsis thaliana unknown protein (At3g12700) mRNA, complete cds Length = 1452 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 573 tgctgctgacccatctgcat 592 |||||||||||||||||||| Sbjct: 550 tgctgctgacccatctgcat 531
>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome Length = 1931047 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 taagtttgatatggtgcaaaaatt 105 ||||||| |||||||||||||||| Sbjct: 702169 taagttttatatggtgcaaaaatt 702192
>gb|AC121312.7| Mus musculus chromosome 3, clone RP24-343J5, complete sequence Length = 165914 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 tcaaataaaccaagtcattt 71 |||||||||||||||||||| Sbjct: 118203 tcaaataaaccaagtcattt 118222
>emb|BX822961.1|CNS0A633 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB77ZB02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1339 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 573 tgctgctgacccatctgcat 592 |||||||||||||||||||| Sbjct: 556 tgctgctgacccatctgcat 537
>emb|BX825042.1|CNS0A5QB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH91ZA12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1379 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 573 tgctgctgacccatctgcat 592 |||||||||||||||||||| Sbjct: 524 tgctgctgacccatctgcat 505
>emb|BX824077.1|CNS0A5OB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH1ZG11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1371 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 573 tgctgctgacccatctgcat 592 |||||||||||||||||||| Sbjct: 545 tgctgctgacccatctgcat 526
>emb|BX822997.1|CNS0A5XQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB7ZB07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1390 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 573 tgctgctgacccatctgcat 592 |||||||||||||||||||| Sbjct: 538 tgctgctgacccatctgcat 519
>emb|BX822935.1|CNS0A4PE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB74ZA07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1390 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 573 tgctgctgacccatctgcat 592 |||||||||||||||||||| Sbjct: 545 tgctgctgacccatctgcat 526
>gb|AC007250.2| Homo sapiens BAC clone RP11-334G22 from 2, complete sequence Length = 180557 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 tactggcaaaagctaagtct 52 |||||||||||||||||||| Sbjct: 41055 tactggcaaaagctaagtct 41036
>dbj|AB024033.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MBK21 Length = 79125 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 573 tgctgctgacccatctgcat 592 |||||||||||||||||||| Sbjct: 23160 tgctgctgacccatctgcat 23141
>dbj|AK108908.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-G05, full insert sequence Length = 925 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 tccatctccagaagcatgcc 298 |||||||||||||||||||| Sbjct: 502 tccatctccagaagcatgcc 483 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,307,545 Number of Sequences: 3902068 Number of extensions: 5307545 Number of successful extensions: 107249 Number of sequences better than 10.0: 128 Number of HSP's better than 10.0 without gapping: 128 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106883 Number of HSP's gapped (non-prelim): 344 length of query: 666 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 643 effective length of database: 17,143,297,704 effective search space: 11023140423672 effective search space used: 11023140423672 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
