>RPOB_AQUPY (Q9X6Y1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1469

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 12  NVFKEKLPSNDSGHILELKLNPMIVNVLRTLPPTYDNLWSSMPP 143
           NVF   L   D   +  +K+N  + N+ + L PT  +L  ++PP
Sbjct: 413 NVFFRDLKRYDLSRVGRVKINAKVHNIPKVLKPTDIDLLDNLPP 456

>ABR18_PEA (Q06930) ABA-responsive protein ABR18|
          Length = 158

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 111 TYDN-LWSSMPPPKTNVGKIHPLXXLXPSNVKKIKVRQILEG 233
           TY+N   S++PP K     +H    + P  V  IK  +ILEG
Sbjct: 5   TYENDTTSTVPPAKLFKAVVHDADLIVPKVVDSIKTVEILEG 46

>APAF_MOUSE (O88879) Apoptotic protease-activating factor 1 (Apaf-1)|
          Length = 1249

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 12  NVFKEKLPSNDSGHILELKLNPMIVNVLRTLPPTYDNLWS 131
           N+ KE LP+     I E K +P++V+++  L   + N W+
Sbjct: 300 NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWA 339


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,275,531
Number of Sequences: 219361
Number of extensions: 742720
Number of successful extensions: 1750
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1749
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)