ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19j07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DLGP4_HUMAN (Q9Y2H0) Disks large-associated protein 4 (DAP-4) (S... 29 6.7
2NYLA_PSES8 (P13398) 6-aminohexanoate-cyclic-dimer hydrolase (EC ... 28 8.7
3NYLA_FLASK (P13397) 6-aminohexanoate-cyclic-dimer hydrolase (EC ... 28 8.7
4XDH_EMENI (Q12553) Xanthine dehydrogenase (EC 1.17.1.4) (Purine ... 24 9.9

>DLGP4_HUMAN (Q9Y2H0) Disks large-associated protein 4 (DAP-4)|
           (SAP90/PSD-95-associated protein 4) (SAPAP4)
           (PSD-95/SAP90-binding protein 4)
          Length = 989

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = -3

Query: 304 KQQGRKGLEEQQRWRRKAPRWWEAGWSPLR--QQRKG*QS-PKARFVSLDSLDRLIPSFS 134
           K  G +  +E     + +P+      S LR  QQ  G QS P+     LDS+D L+PS  
Sbjct: 371 KAMGDEDSDESGGSPKPSPKTAARRQSYLRATQQSLGEQSNPRRSLDRLDSVDMLLPSKC 430

Query: 133 PSEEKQDMSPV 101
           PS E +D +PV
Sbjct: 431 PSWE-EDYTPV 440



to top

>NYLA_PSES8 (P13398) 6-aminohexanoate-cyclic-dimer hydrolase (EC 3.5.2.12)|
           (Nylon oligomers degrading enzyme EI)
          Length = 492

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 283 LEEQQRWRRKAPRWWEAGWSPL 218
           ++E + +  K  RWWEAGW  L
Sbjct: 362 VDELRYYAGKVERWWEAGWDLL 383



to top

>NYLA_FLASK (P13397) 6-aminohexanoate-cyclic-dimer hydrolase (EC 3.5.2.12)|
           (Nylon oligomers degrading enzyme EI)
          Length = 492

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 283 LEEQQRWRRKAPRWWEAGWSPL 218
           ++E + +  K  RWWEAGW  L
Sbjct: 362 VDELRYYAGKVERWWEAGWDLL 383



to top

>XDH_EMENI (Q12553) Xanthine dehydrogenase (EC 1.17.1.4) (Purine hydroxylase|
           I)
          Length = 1363

 Score = 24.3 bits (51), Expect(2) = 9.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 39  VKFKADTEKRPPPKLWRQQ 95
           +++K DTE   PP LW+ +
Sbjct: 242 IEYKPDTELIFPPSLWKHE 260



 Score = 22.3 bits (46), Expect(2) = 9.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 98  RHGRHILLFLTRAKRWYKPI 157
           +H    L F  + K+WY+P+
Sbjct: 258 KHELRPLAFGNKRKKWYRPV 277


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,114,230
Number of Sequences: 219361
Number of extensions: 1013277
Number of successful extensions: 2590
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2589
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top