| Clone Name | rbags19j07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473041.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1308 Score = 143 bits (72), Expect = 6e-31 Identities = 160/188 (85%), Gaps = 6/188 (3%) Strand = Plus / Minus Query: 269 ctgttgttcttccagtcccttcctcccctgttgcttctattattgctattgtatctccct 328 ||||| ||||||||||||||||| |||||| |||||||| | |||| || | ||| Sbjct: 1217 ctgttattcttccagtcccttcc---cctgttacttctattgtctctat---attttcct 1164 Query: 329 tggccaccctttatttcactccaataatctttctcagcttgtccagacacaggttccaag 388 || || |||||||| ||||||||||||| ||||||||||| || |||||||||||||| Sbjct: 1163 tgaccgccctttatcgcactccaataatccttctcagcttgaccggacacaggttccaaa 1104 Query: 389 gtaacaaggcggcccttcataatcaaaccaccttcatccgcaagagctgcaaatgcacgg 448 |||||||| |||||||||||||||||||||||||||| | || ||| |||| ||||||| Sbjct: 1103 gtaacaagatggcccttcataatcaaaccaccttcatctgaaatagccgcaagtgcacgg 1044 Query: 449 gccttttc 456 |||||||| Sbjct: 1043 gccttttc 1036
>dbj|AK059415.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D05, full insert sequence Length = 1595 Score = 143 bits (72), Expect = 6e-31 Identities = 160/188 (85%), Gaps = 6/188 (3%) Strand = Plus / Minus Query: 269 ctgttgttcttccagtcccttcctcccctgttgcttctattattgctattgtatctccct 328 ||||| ||||||||||||||||| |||||| |||||||| | |||| || | ||| Sbjct: 1247 ctgttattcttccagtcccttcc---cctgttacttctattgtctctat---attttcct 1194 Query: 329 tggccaccctttatttcactccaataatctttctcagcttgtccagacacaggttccaag 388 || || |||||||| ||||||||||||| ||||||||||| || |||||||||||||| Sbjct: 1193 tgaccgccctttatcgcactccaataatccttctcagcttgaccggacacaggttccaaa 1134 Query: 389 gtaacaaggcggcccttcataatcaaaccaccttcatccgcaagagctgcaaatgcacgg 448 |||||||| |||||||||||||||||||||||||||| | || ||| |||| ||||||| Sbjct: 1133 gtaacaagatggcccttcataatcaaaccaccttcatctgaaatagccgcaagtgcacgg 1074 Query: 449 gccttttc 456 |||||||| Sbjct: 1073 gccttttc 1066
>dbj|AK058436.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-F07, full insert sequence Length = 1449 Score = 143 bits (72), Expect = 6e-31 Identities = 160/188 (85%), Gaps = 6/188 (3%) Strand = Plus / Minus Query: 269 ctgttgttcttccagtcccttcctcccctgttgcttctattattgctattgtatctccct 328 ||||| ||||||||||||||||| |||||| |||||||| | |||| || | ||| Sbjct: 505 ctgttattcttccagtcccttcc---cctgttacttctattgtctctat---attttcct 452 Query: 329 tggccaccctttatttcactccaataatctttctcagcttgtccagacacaggttccaag 388 || || |||||||| ||||||||||||| ||||||||||| || |||||||||||||| Sbjct: 451 tgaccgccctttatcgcactccaataatccttctcagcttgaccggacacaggttccaaa 392 Query: 389 gtaacaaggcggcccttcataatcaaaccaccttcatccgcaagagctgcaaatgcacgg 448 |||||||| |||||||||||||||||||||||||||| | || ||| |||| ||||||| Sbjct: 391 gtaacaagatggcccttcataatcaaaccaccttcatctgaaatagccgcaagtgcacgg 332 Query: 449 gccttttc 456 |||||||| Sbjct: 331 gccttttc 324
>dbj|AK099054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149O10, full insert sequence Length = 1594 Score = 135 bits (68), Expect = 1e-28 Identities = 159/188 (84%), Gaps = 6/188 (3%) Strand = Plus / Minus Query: 269 ctgttgttcttccagtcccttcctcccctgttgcttctattattgctattgtatctccct 328 ||||| ||||||||||||||||| |||||| |||||||| | |||| || | ||| Sbjct: 1248 ctgttattcttccagtcccttcc---cctgttacttctattgtctctat---attttcct 1195 Query: 329 tggccaccctttatttcactccaataatctttctcagcttgtccagacacaggttccaag 388 || || |||||||| ||||||||||||| ||||||||||| || |||||||||||||| Sbjct: 1194 tgaccgccctttatcgcactccaataatccttctcagcttgaccggacacaggttccaaa 1135 Query: 389 gtaacaaggcggcccttcataatcaaaccaccttcatccgcaagagctgcaaatgcacgg 448 |||||||| |||||||||||||||||||||||||||| | || ||| |||| |||||| Sbjct: 1134 gtaacaagatggcccttcataatcaaaccaccttcatctgaaatagccgcaagtgcacgt 1075 Query: 449 gccttttc 456 |||||||| Sbjct: 1074 gccttttc 1067
>gb|BT018274.1| Zea mays clone EL01T0203E04.c mRNA sequence Length = 1481 Score = 105 bits (53), Expect = 1e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 345 cactccaataatctttctcagcttgtccagacacaggttccaaggtaacaaggcggccct 404 ||||||||||||| || |||||||| ||||||||||||||||| | || | | |||| | Sbjct: 1222 cactccaataatccttttcagcttgaccagacacaggttccaaaatgactatgtggcctt 1163 Query: 405 tcataatcaaaccaccttcatccgcaagagctgcaaatgcacgggcctt 453 ||||| |||||||||||||||| |||| |||||||||||||||||||| Sbjct: 1162 tcatagtcaaaccaccttcatctgcaatggctgcaaatgcacgggcctt 1114 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 266 cctctgttgttcttccagtcccttcctc 293 |||| ||||||||||||||||| ||||| Sbjct: 1295 cctcggttgttcttccagtcccgtcctc 1268
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 101 bits (51), Expect = 2e-18 Identities = 75/83 (90%) Strand = Plus / Plus Query: 374 gacacaggttccaaggtaacaaggcggcccttcataatcaaaccaccttcatccgcaaga 433 |||||||||||||| |||||||| |||||||||||||||||||||||||||| | || | Sbjct: 24859157 gacacaggttccaaagtaacaagatggcccttcataatcaaaccaccttcatctgaaata 24859216 Query: 434 gctgcaaatgcacgggccttttc 456 || |||| ||||||||||||||| Sbjct: 24859217 gccgcaagtgcacgggccttttc 24859239 Score = 48.1 bits (24), Expect = 0.026 Identities = 39/44 (88%) Strand = Plus / Plus Query: 326 ccttggccaccctttatttcactccaataatctttctcagcttg 369 ||||| || |||||||| ||||||||||||| ||||||||||| Sbjct: 24858805 ccttgaccgccctttatcgcactccaataatccttctcagcttg 24858848
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence Length = 170765 Score = 101 bits (51), Expect = 2e-18 Identities = 75/83 (90%) Strand = Plus / Plus Query: 374 gacacaggttccaaggtaacaaggcggcccttcataatcaaaccaccttcatccgcaaga 433 |||||||||||||| |||||||| |||||||||||||||||||||||||||| | || | Sbjct: 120873 gacacaggttccaaagtaacaagatggcccttcataatcaaaccaccttcatctgaaata 120932 Query: 434 gctgcaaatgcacgggccttttc 456 || |||| ||||||||||||||| Sbjct: 120933 gccgcaagtgcacgggccttttc 120955 Score = 48.1 bits (24), Expect = 0.026 Identities = 39/44 (88%) Strand = Plus / Plus Query: 326 ccttggccaccctttatttcactccaataatctttctcagcttg 369 ||||| || |||||||| ||||||||||||| ||||||||||| Sbjct: 120521 ccttgaccgccctttatcgcactccaataatccttctcagcttg 120564
>ref|XM_466667.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1718 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 348 tccaataatctttctcagcttgtccagacacaggttccaaggtaacaa 395 |||||||||| |||||||||| |||| |||||| ||||||||||||| Sbjct: 1341 tccaataatccttctcagcttcaccagtcacaggctccaaggtaacaa 1294
>dbj|AK102477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094I09, full insert sequence Length = 1718 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 348 tccaataatctttctcagcttgtccagacacaggttccaaggtaacaa 395 |||||||||| |||||||||| |||| |||||| ||||||||||||| Sbjct: 1341 tccaataatccttctcagcttcaccagtcacaggctccaaggtaacaa 1294
>emb|AL157394.15| Human DNA sequence from clone RP11-399O19 on chromosome 10 Contains the 5' end of a novel gene (MGC22805), a novel pseudogene (FLJ12598), the gene for a novel Mov34/MPN/PAD-1 family domain containing protein (KIAA1373 FLJ35627 FLJ33359), a novel gene (FLJ36021), the ACTA2 gene for actin alpha 2 smooth muscle aorta, the TNFRSF6 gene for tumor necrosis factor receptor superfamily member 6 and two CpG islands, complete sequence Length = 187313 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 80 gctgtggaggcagcaagcagg 100 ||||||||||||||||||||| Sbjct: 72875 gctgtggaggcagcaagcagg 72855
>gb|AC171263.1| Pan troglodytes chromosome X clone PTB-018K13 map human ortholog p11.4, complete sequence Length = 147595 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 ttcagactttaaagagcaca 37 |||||||||||||||||||| Sbjct: 48828 ttcagactttaaagagcaca 48809
>gb|AC146033.2| Pan troglodytes BAC clone RP43-14B18 from 7, complete sequence Length = 170094 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 ttcagactttaaagagcaca 37 |||||||||||||||||||| Sbjct: 88207 ttcagactttaaagagcaca 88226
>ref|XM_391208.1| Gibberella zeae PH-1 chromosome 3 GAOA_DACDE Galactose oxidase precursor (GAO) (FG11032.1) partial mRNA Length = 2115 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 cacctctgttgttcttccag 283 |||||||||||||||||||| Sbjct: 1521 cacctctgttgttcttccag 1540
>gb|AC114341.9| Homo sapiens chromosome 18, clone RP11-248M19, complete sequence Length = 169813 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 338 tttatttcactccaataatctttc 361 ||||||||||||||||| |||||| Sbjct: 133299 tttatttcactccaatattctttc 133276
>emb|AL627402.10| Human DNA sequence from clone RP11-204C16 on chromosome X Contains part of the CASK gene for calcium/calmodulin-dependent serine protein kinase (MAGUK family), the GPR34 gene for G protein-coupled receptor 34, the GPR82 gene for G protein-coupled receptor 82, a tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide (YWHAZ) pseudogene and a CpG island, complete sequence Length = 132290 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 ttcagactttaaagagcaca 37 |||||||||||||||||||| Sbjct: 57173 ttcagactttaaagagcaca 57154
>emb|AL162272.10| Human DNA sequence from clone RP11-145E8 on chromosome 10 Contains a novel gene (KIAA1074), the 3' end of the YME1L1 gene for YME1-like 1 (S. cerevisiae) and a CpG island, complete sequence Length = 154904 Score = 40.1 bits (20), Expect = 6.2 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 39 gtaaaatttaaagcag-acacagaaaaa 65 |||||||||||||||| ||||||||||| Sbjct: 54491 gtaaaatttaaagcagcacacagaaaaa 54464
>gb|AC009806.9| Homo sapiens chromosome 11, clone RP11-51B23, complete sequence Length = 175223 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 gaccaccccgcttcccacca 244 |||||||||||||||||||| Sbjct: 156820 gaccaccccgcttcccacca 156839
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 Length = 1779707 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 ttaaagcagacacagaaaaa 65 |||||||||||||||||||| Sbjct: 1768146 ttaaagcagacacagaaaaa 1768127
>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome Length = 2174500 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 attgctattgtatctccctt 329 |||||||||||||||||||| Sbjct: 1315389 attgctattgtatctccctt 1315408
>gb|AC008824.6|AC008824 Homo sapiens chromosome 5 clone CTD-2132K6, complete sequence Length = 121178 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 tatcttgcttttcctcacta 131 |||||||||||||||||||| Sbjct: 108304 tatcttgcttttcctcacta 108323
>gb|AC108066.3| Homo sapiens BAC clone RP11-521H5 from 2, complete sequence Length = 158599 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 tcactccaataatctttctc 363 |||||||||||||||||||| Sbjct: 92975 tcactccaataatctttctc 92994
>ref|XM_235721.3| PREDICTED: Rattus norvegicus insulin receptor substrate 4 (IRS-4), mRNA Length = 4083 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 agtggcgaccaccccgcttc 238 |||||||||||||||||||| Sbjct: 609 agtggcgaccaccccgcttc 628
>ref|XM_575634.1| PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC500284), mRNA Length = 1625 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 cttcccaccaccgtggtgccttcc 258 |||||||||||||||| ||||||| Sbjct: 1511 cttcccaccaccgtggagccttcc 1488
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 341 atttcactccaataatctttctca 364 ||||| |||||||||||||||||| Sbjct: 2217978 atttctctccaataatctttctca 2217955
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 atcaaaccaccttcatccgc 429 |||||||||||||||||||| Sbjct: 2464799 atcaaaccaccttcatccgc 2464780
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ctgttgcttctattattgct 315 |||||||||||||||||||| Sbjct: 2014367 ctgttgcttctattattgct 2014348
>gb|AC091981.4| Homo sapiens chromosome 5 clone RP11-549L3, complete sequence Length = 187685 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 297 tgttgcttctattattgctattgt 320 ||||||||||||||||| |||||| Sbjct: 45887 tgttgcttctattattgttattgt 45910
>gb|M86819.1|CDOGAOA Dactylium dendroides (asexual stage of Cladobotryum dendroides) galactose oxidase monomer (gaoA) gene, complete cds Length = 3466 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 cacctctgttgttcttccag 283 |||||||||||||||||||| Sbjct: 2287 cacctctgttgttcttccag 2306 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,653,383 Number of Sequences: 3902068 Number of extensions: 4653383 Number of successful extensions: 89478 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 89281 Number of HSP's gapped (non-prelim): 197 length of query: 462 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 440 effective length of database: 17,147,199,772 effective search space: 7544767899680 effective search space used: 7544767899680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)