ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19j07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_473041.1| Oryza sativa (japonica cultivar-group), predic... 143 6e-31
2dbj|AK059415.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 6e-31
3dbj|AK058436.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 6e-31
4dbj|AK099054.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
5gb|BT018274.1| Zea mays clone EL01T0203E04.c mRNA sequence 105 1e-19
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
7emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,... 101 2e-18
8ref|XM_466667.1| Oryza sativa (japonica cultivar-group), mRNA 56 1e-04
9dbj|AK102477.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
10emb|AL157394.15| Human DNA sequence from clone RP11-399O19 on ch... 42 1.6
11gb|AC171263.1| Pan troglodytes chromosome X clone PTB-018K13 map... 40 6.2
12gb|AC146033.2| Pan troglodytes BAC clone RP43-14B18 from 7, comp... 40 6.2
13ref|XM_391208.1| Gibberella zeae PH-1 chromosome 3 GAOA_DACDE Ga... 40 6.2
14gb|AC114341.9| Homo sapiens chromosome 18, clone RP11-248M19, co... 40 6.2
15emb|AL627402.10| Human DNA sequence from clone RP11-204C16 on ch... 40 6.2
16emb|AL162272.10| Human DNA sequence from clone RP11-145E8 on chr... 40 6.2
17gb|AC009806.9| Homo sapiens chromosome 11, clone RP11-51B23, com... 40 6.2
18dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 40 6.2
19gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 6.2
20gb|AC008824.6|AC008824 Homo sapiens chromosome 5 clone CTD-2132K... 40 6.2
21gb|AC108066.3| Homo sapiens BAC clone RP11-521H5 from 2, complet... 40 6.2
22ref|XM_235721.3| PREDICTED: Rattus norvegicus insulin receptor s... 40 6.2
23ref|XM_575634.1| PREDICTED: Rattus norvegicus similar to LRRGT00... 40 6.2
24gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 6.2
25gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 6.2
26emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 6.2
27gb|AC091981.4| Homo sapiens chromosome 5 clone RP11-549L3, compl... 40 6.2
28gb|M86819.1|CDOGAOA Dactylium dendroides (asexual stage of Clado... 40 6.2

>ref|XM_473041.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1308

 Score =  143 bits (72), Expect = 6e-31
 Identities = 160/188 (85%), Gaps = 6/188 (3%)
 Strand = Plus / Minus

                                                                        
Query: 269  ctgttgttcttccagtcccttcctcccctgttgcttctattattgctattgtatctccct 328
            ||||| |||||||||||||||||   |||||| |||||||| |  ||||   || | |||
Sbjct: 1217 ctgttattcttccagtcccttcc---cctgttacttctattgtctctat---attttcct 1164

                                                                        
Query: 329  tggccaccctttatttcactccaataatctttctcagcttgtccagacacaggttccaag 388
            || || ||||||||  ||||||||||||| ||||||||||| || |||||||||||||| 
Sbjct: 1163 tgaccgccctttatcgcactccaataatccttctcagcttgaccggacacaggttccaaa 1104

                                                                        
Query: 389  gtaacaaggcggcccttcataatcaaaccaccttcatccgcaagagctgcaaatgcacgg 448
            ||||||||  |||||||||||||||||||||||||||| | || ||| |||| |||||||
Sbjct: 1103 gtaacaagatggcccttcataatcaaaccaccttcatctgaaatagccgcaagtgcacgg 1044

                    
Query: 449  gccttttc 456
            ||||||||
Sbjct: 1043 gccttttc 1036



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>dbj|AK059415.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D05, full
            insert sequence
          Length = 1595

 Score =  143 bits (72), Expect = 6e-31
 Identities = 160/188 (85%), Gaps = 6/188 (3%)
 Strand = Plus / Minus

                                                                        
Query: 269  ctgttgttcttccagtcccttcctcccctgttgcttctattattgctattgtatctccct 328
            ||||| |||||||||||||||||   |||||| |||||||| |  ||||   || | |||
Sbjct: 1247 ctgttattcttccagtcccttcc---cctgttacttctattgtctctat---attttcct 1194

                                                                        
Query: 329  tggccaccctttatttcactccaataatctttctcagcttgtccagacacaggttccaag 388
            || || ||||||||  ||||||||||||| ||||||||||| || |||||||||||||| 
Sbjct: 1193 tgaccgccctttatcgcactccaataatccttctcagcttgaccggacacaggttccaaa 1134

                                                                        
Query: 389  gtaacaaggcggcccttcataatcaaaccaccttcatccgcaagagctgcaaatgcacgg 448
            ||||||||  |||||||||||||||||||||||||||| | || ||| |||| |||||||
Sbjct: 1133 gtaacaagatggcccttcataatcaaaccaccttcatctgaaatagccgcaagtgcacgg 1074

                    
Query: 449  gccttttc 456
            ||||||||
Sbjct: 1073 gccttttc 1066



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>dbj|AK058436.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-F07, full
           insert sequence
          Length = 1449

 Score =  143 bits (72), Expect = 6e-31
 Identities = 160/188 (85%), Gaps = 6/188 (3%)
 Strand = Plus / Minus

                                                                       
Query: 269 ctgttgttcttccagtcccttcctcccctgttgcttctattattgctattgtatctccct 328
           ||||| |||||||||||||||||   |||||| |||||||| |  ||||   || | |||
Sbjct: 505 ctgttattcttccagtcccttcc---cctgttacttctattgtctctat---attttcct 452

                                                                       
Query: 329 tggccaccctttatttcactccaataatctttctcagcttgtccagacacaggttccaag 388
           || || ||||||||  ||||||||||||| ||||||||||| || |||||||||||||| 
Sbjct: 451 tgaccgccctttatcgcactccaataatccttctcagcttgaccggacacaggttccaaa 392

                                                                       
Query: 389 gtaacaaggcggcccttcataatcaaaccaccttcatccgcaagagctgcaaatgcacgg 448
           ||||||||  |||||||||||||||||||||||||||| | || ||| |||| |||||||
Sbjct: 391 gtaacaagatggcccttcataatcaaaccaccttcatctgaaatagccgcaagtgcacgg 332

                   
Query: 449 gccttttc 456
           ||||||||
Sbjct: 331 gccttttc 324



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>dbj|AK099054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149O10, full
            insert sequence
          Length = 1594

 Score =  135 bits (68), Expect = 1e-28
 Identities = 159/188 (84%), Gaps = 6/188 (3%)
 Strand = Plus / Minus

                                                                        
Query: 269  ctgttgttcttccagtcccttcctcccctgttgcttctattattgctattgtatctccct 328
            ||||| |||||||||||||||||   |||||| |||||||| |  ||||   || | |||
Sbjct: 1248 ctgttattcttccagtcccttcc---cctgttacttctattgtctctat---attttcct 1195

                                                                        
Query: 329  tggccaccctttatttcactccaataatctttctcagcttgtccagacacaggttccaag 388
            || || ||||||||  ||||||||||||| ||||||||||| || |||||||||||||| 
Sbjct: 1194 tgaccgccctttatcgcactccaataatccttctcagcttgaccggacacaggttccaaa 1135

                                                                        
Query: 389  gtaacaaggcggcccttcataatcaaaccaccttcatccgcaagagctgcaaatgcacgg 448
            ||||||||  |||||||||||||||||||||||||||| | || ||| |||| |||||| 
Sbjct: 1134 gtaacaagatggcccttcataatcaaaccaccttcatctgaaatagccgcaagtgcacgt 1075

                    
Query: 449  gccttttc 456
            ||||||||
Sbjct: 1074 gccttttc 1067



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>gb|BT018274.1| Zea mays clone EL01T0203E04.c mRNA sequence
          Length = 1481

 Score =  105 bits (53), Expect = 1e-19
 Identities = 95/109 (87%)
 Strand = Plus / Minus

                                                                        
Query: 345  cactccaataatctttctcagcttgtccagacacaggttccaaggtaacaaggcggccct 404
            ||||||||||||| || |||||||| |||||||||||||||||  | || | | |||| |
Sbjct: 1222 cactccaataatccttttcagcttgaccagacacaggttccaaaatgactatgtggcctt 1163

                                                             
Query: 405  tcataatcaaaccaccttcatccgcaagagctgcaaatgcacgggcctt 453
            ||||| |||||||||||||||| ||||  ||||||||||||||||||||
Sbjct: 1162 tcatagtcaaaccaccttcatctgcaatggctgcaaatgcacgggcctt 1114



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 266  cctctgttgttcttccagtcccttcctc 293
            |||| ||||||||||||||||| |||||
Sbjct: 1295 cctcggttgttcttccagtcccgtcctc 1268



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  101 bits (51), Expect = 2e-18
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                            
Query: 374      gacacaggttccaaggtaacaaggcggcccttcataatcaaaccaccttcatccgcaaga 433
                |||||||||||||| ||||||||  |||||||||||||||||||||||||||| | || |
Sbjct: 24859157 gacacaggttccaaagtaacaagatggcccttcataatcaaaccaccttcatctgaaata 24859216

                                       
Query: 434      gctgcaaatgcacgggccttttc 456
                || |||| |||||||||||||||
Sbjct: 24859217 gccgcaagtgcacgggccttttc 24859239



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 326      ccttggccaccctttatttcactccaataatctttctcagcttg 369
                ||||| || ||||||||  ||||||||||||| |||||||||||
Sbjct: 24858805 ccttgaccgccctttatcgcactccaataatccttctcagcttg 24858848



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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
              complete sequence
          Length = 170765

 Score =  101 bits (51), Expect = 2e-18
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                          
Query: 374    gacacaggttccaaggtaacaaggcggcccttcataatcaaaccaccttcatccgcaaga 433
              |||||||||||||| ||||||||  |||||||||||||||||||||||||||| | || |
Sbjct: 120873 gacacaggttccaaagtaacaagatggcccttcataatcaaaccaccttcatctgaaata 120932

                                     
Query: 434    gctgcaaatgcacgggccttttc 456
              || |||| |||||||||||||||
Sbjct: 120933 gccgcaagtgcacgggccttttc 120955



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                          
Query: 326    ccttggccaccctttatttcactccaataatctttctcagcttg 369
              ||||| || ||||||||  ||||||||||||| |||||||||||
Sbjct: 120521 ccttgaccgccctttatcgcactccaataatccttctcagcttg 120564



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>ref|XM_466667.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1718

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 348  tccaataatctttctcagcttgtccagacacaggttccaaggtaacaa 395
            |||||||||| ||||||||||  |||| |||||| |||||||||||||
Sbjct: 1341 tccaataatccttctcagcttcaccagtcacaggctccaaggtaacaa 1294



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>dbj|AK102477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094I09, full
            insert sequence
          Length = 1718

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 348  tccaataatctttctcagcttgtccagacacaggttccaaggtaacaa 395
            |||||||||| ||||||||||  |||| |||||| |||||||||||||
Sbjct: 1341 tccaataatccttctcagcttcaccagtcacaggctccaaggtaacaa 1294



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>emb|AL157394.15| Human DNA sequence from clone RP11-399O19 on chromosome 10 Contains the
             5' end of a novel gene (MGC22805), a novel pseudogene
             (FLJ12598), the gene for a novel Mov34/MPN/PAD-1 family
             domain containing protein (KIAA1373 FLJ35627 FLJ33359), a
             novel gene (FLJ36021), the ACTA2 gene for actin alpha 2
             smooth muscle aorta, the TNFRSF6 gene for tumor necrosis
             factor receptor superfamily member 6 and two CpG islands,
             complete sequence
          Length = 187313

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    gctgtggaggcagcaagcagg 100
             |||||||||||||||||||||
Sbjct: 72875 gctgtggaggcagcaagcagg 72855



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>gb|AC171263.1| Pan troglodytes chromosome X clone PTB-018K13 map human ortholog p11.4,
             complete sequence
          Length = 147595

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    ttcagactttaaagagcaca 37
             ||||||||||||||||||||
Sbjct: 48828 ttcagactttaaagagcaca 48809



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>gb|AC146033.2| Pan troglodytes BAC clone RP43-14B18 from 7, complete sequence
          Length = 170094

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    ttcagactttaaagagcaca 37
             ||||||||||||||||||||
Sbjct: 88207 ttcagactttaaagagcaca 88226



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>ref|XM_391208.1| Gibberella zeae PH-1 chromosome 3 GAOA_DACDE Galactose oxidase
            precursor (GAO) (FG11032.1) partial mRNA
          Length = 2115

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 264  cacctctgttgttcttccag 283
            ||||||||||||||||||||
Sbjct: 1521 cacctctgttgttcttccag 1540



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>gb|AC114341.9| Homo sapiens chromosome 18, clone RP11-248M19, complete sequence
          Length = 169813

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 338    tttatttcactccaataatctttc 361
              ||||||||||||||||| ||||||
Sbjct: 133299 tttatttcactccaatattctttc 133276



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>emb|AL627402.10| Human DNA sequence from clone RP11-204C16 on chromosome X Contains part
             of the CASK gene for calcium/calmodulin-dependent serine
             protein kinase (MAGUK family), the GPR34 gene for G
             protein-coupled receptor 34, the GPR82 gene for G
             protein-coupled receptor 82, a tyrosine
             3-monooxygenase/tryptophan 5-monooxygenase activation
             protein, zeta polypeptide (YWHAZ) pseudogene and a CpG
             island, complete sequence
          Length = 132290

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    ttcagactttaaagagcaca 37
             ||||||||||||||||||||
Sbjct: 57173 ttcagactttaaagagcaca 57154



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>emb|AL162272.10| Human DNA sequence from clone RP11-145E8 on chromosome 10 Contains a
             novel gene (KIAA1074), the 3' end of the YME1L1 gene for
             YME1-like 1 (S. cerevisiae) and a CpG island, complete
             sequence
          Length = 154904

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 39    gtaaaatttaaagcag-acacagaaaaa 65
             |||||||||||||||| |||||||||||
Sbjct: 54491 gtaaaatttaaagcagcacacagaaaaa 54464



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>gb|AC009806.9| Homo sapiens chromosome 11, clone RP11-51B23, complete sequence
          Length = 175223

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    gaccaccccgcttcccacca 244
              ||||||||||||||||||||
Sbjct: 156820 gaccaccccgcttcccacca 156839



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>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102
          Length = 1779707

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 46      ttaaagcagacacagaaaaa 65
               ||||||||||||||||||||
Sbjct: 1768146 ttaaagcagacacagaaaaa 1768127



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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 310     attgctattgtatctccctt 329
               ||||||||||||||||||||
Sbjct: 1315389 attgctattgtatctccctt 1315408



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>gb|AC008824.6|AC008824 Homo sapiens chromosome 5 clone CTD-2132K6, complete sequence
          Length = 121178

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    tatcttgcttttcctcacta 131
              ||||||||||||||||||||
Sbjct: 108304 tatcttgcttttcctcacta 108323



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>gb|AC108066.3| Homo sapiens BAC clone RP11-521H5 from 2, complete sequence
          Length = 158599

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   tcactccaataatctttctc 363
             ||||||||||||||||||||
Sbjct: 92975 tcactccaataatctttctc 92994



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>ref|XM_235721.3| PREDICTED: Rattus norvegicus insulin receptor substrate 4 (IRS-4),
           mRNA
          Length = 4083

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 219 agtggcgaccaccccgcttc 238
           ||||||||||||||||||||
Sbjct: 609 agtggcgaccaccccgcttc 628



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>ref|XM_575634.1| PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC500284), mRNA
          Length = 1625

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 235  cttcccaccaccgtggtgccttcc 258
            |||||||||||||||| |||||||
Sbjct: 1511 cttcccaccaccgtggagccttcc 1488



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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 341     atttcactccaataatctttctca 364
               ||||| ||||||||||||||||||
Sbjct: 2217978 atttctctccaataatctttctca 2217955



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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 410     atcaaaccaccttcatccgc 429
               ||||||||||||||||||||
Sbjct: 2464799 atcaaaccaccttcatccgc 2464780



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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 296     ctgttgcttctattattgct 315
               ||||||||||||||||||||
Sbjct: 2014367 ctgttgcttctattattgct 2014348



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>gb|AC091981.4| Homo sapiens chromosome 5 clone RP11-549L3, complete sequence
          Length = 187685

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 297   tgttgcttctattattgctattgt 320
             ||||||||||||||||| ||||||
Sbjct: 45887 tgttgcttctattattgttattgt 45910



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>gb|M86819.1|CDOGAOA Dactylium dendroides (asexual stage of Cladobotryum dendroides)
            galactose oxidase monomer (gaoA) gene, complete cds
          Length = 3466

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 264  cacctctgttgttcttccag 283
            ||||||||||||||||||||
Sbjct: 2287 cacctctgttgttcttccag 2306


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,653,383
Number of Sequences: 3902068
Number of extensions: 4653383
Number of successful extensions: 89478
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 89281
Number of HSP's gapped (non-prelim): 197
length of query: 462
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 440
effective length of database: 17,147,199,772
effective search space: 7544767899680
effective search space used: 7544767899680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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