ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19j05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NUD12_MOUSE (Q9DCN1) Peroxisomal NADH pyrophosphatase NUDT12 (EC... 30 4.5
2TRPM7_MOUSE (Q923J1) Transient receptor potential cation channel... 29 5.9
3TRPM7_HUMAN (Q96QT4) Transient receptor potential cation channel... 29 7.7

>NUD12_MOUSE (Q9DCN1) Peroxisomal NADH pyrophosphatase NUDT12 (EC 3.6.1.22)|
           (Nucleoside diphosphate-linked moiety X motif 12) (Nudix
           motif 12)
          Length = 462

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
 Frame = -1

Query: 486 LCKVNHSDLRQLLLVSKPVSEATVVAKELHFAFATPSKASADGEEEDDG----------P 337
           LC++N+ D++  L   + ++    +  EL     +P++A    EEE+DG          P
Sbjct: 176 LCQLNYPDVKGYLAQPEKIT-LVFLGVELEMRKGSPAQAGGVPEEEEDGLVAWFALGIEP 234

Query: 336 GAPKQHRVARSRC 298
           GA ++ +     C
Sbjct: 235 GAAEEFKQRHENC 247



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>TRPM7_MOUSE (Q923J1) Transient receptor potential cation channel subfamily M|
           member 7 (EC 2.7.11.1) (Long transient receptor
           potential channel 7) (LTrpC7) (Channel-kinase 1)
           (Transient receptor potential-phospholipase
           C-interacting kinase) (TRP-PLIK)
          Length = 1863

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 14  SYTITYTEIKQRVLFNRSIEEWPYNLHTTNTDDD 115
           S  + Y+++K    FN++IEEW    HT  +  D
Sbjct: 57  SLAMKYSDVKLGEHFNQAIEEWSVEKHTEQSPTD 90



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>TRPM7_HUMAN (Q96QT4) Transient receptor potential cation channel subfamily M|
           member 7 (EC 2.7.11.1) (Long transient receptor
           potential channel 7) (LTrpC7) (Channel-kinase 1)
          Length = 1865

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 14  SYTITYTEIKQRVLFNRSIEEWPYNLHTTNTDDD 115
           S  + Y+++K    FN++IEEW    HT  +  D
Sbjct: 57  SLAMKYSDVKLGDHFNQAIEEWSVEKHTEQSPTD 90


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,645,421
Number of Sequences: 219361
Number of extensions: 1127662
Number of successful extensions: 3525
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3525
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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