ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19j05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478713.1| Oryza sativa (japonica cultivar-group), mRNA 92 2e-15
2dbj|AK072982.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
4dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
5dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
6emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4,... 42 1.7
7ref|NM_138885.1| Rattus norvegicus golgi autoantigen, golgin sub... 42 1.7
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
9dbj|AK070186.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
10emb|AL442118.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 1.7
11dbj|D25543.1|RATGCP60 Rattus norvegicus mRNA for novel golgi-ass... 42 1.7
12gb|AC137003.3| Oryza sativa (japonica cultivar-group) Chromosome... 40 6.6
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.6
14ref|XM_446202.1| Candida glabrata CBS138, CAGL0F05335g partial mRNA 40 6.6
15emb|AL135786.17| Human DNA sequence from clone RP11-12D24 on chr... 40 6.6
16gb|AC016919.15| Homo sapiens 3 BAC RP11-220J13 (Roswell Park Can... 40 6.6
17emb|CR380952.1| Candida glabrata strain CBS138 chromosome F comp... 40 6.6
18emb|AL663013.4|OSJN00214 Oryza sativa genomic DNA, chromosome 4,... 40 6.6
19gb|DQ025528.1| Rattus norvegicus CXCL16 (Cxcl16) mRNA, complete cds 40 6.6
20gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0... 40 6.6
21gb|AY083609.1| Schistosoma japonicum MF7 protein mRNA, complete cds 40 6.6
22gb|AC074105.3| Oryza sativa chromosome 10 clone OSJNBa0030B02, c... 40 6.6
23gb|AF104934.1|AF104934 Homo sapiens prorelaxin H1 precursor, gen... 40 6.6
24ref|NM_001017478.1| Rattus norvegicus similar to chemokine (C-X-... 40 6.6
25gb|AC157916.2| Mus musculus chromosome 19, clone RP24-330P23, co... 40 6.6
26gb|S82681.1| H1RLX=relaxin H1 {5' region} [human, Genomic, 984 nt] 40 6.6
27gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nippon... 40 6.6
28gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 6.6
29gb|AC160393.2| Mus musculus BAC clone RP23-136M3 from chromosome... 40 6.6
30dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
31dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
32dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
33dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
34dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
35dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
36dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
37dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
38dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
39gb|BC079312.1| Rattus norvegicus similar to chemokine (C-X-C mot... 40 6.6
40gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
41dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
42dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
43dbj|AP005534.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
44dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.6
45dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
46dbj|AP003793.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
47dbj|AP005470.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
48dbj|AP005532.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
49dbj|AP004999.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
50gb|AC137148.14| Mus musculus chromosome 19, clone RP24-210C4, co... 40 6.6
51gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
52gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
53gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
54emb|AL772425.7|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396... 40 6.6
55emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4,... 40 6.6
56emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.6
57dbj|AB071600.1| Oryza sativa (japonica cultivar-group) gene for ... 40 6.6
58dbj|AB064519.1| Oryza sativa (japonica cultivar-group) OsRS2 mRN... 40 6.6 
>ref|XM_478713.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1146

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 91/106 (85%)
 Strand = Plus / Minus

                                                                       
Query: 380 ggcgtcgcgaaggcgaaatgcagctccttggcaaccactgttgcttcgctgactggcttc 439
           |||||||| || ||||||||| ||||  | |||||||| ||||||||||| ||| | || 
Sbjct: 661 ggcgtcgcaaacgcgaaatgctgctctctcgcaaccaccgttgcttcgctaacttgtttt 602

                                                         
Query: 440 gacacaaggaggagctgcctcaggtcgctgtggttcaccttgcaca 485
           ||||| ||||| ||| |||||||||| |||||||||||||||||||
Sbjct: 601 gacactaggagcagcggcctcaggtcactgtggttcaccttgcaca 556



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 47   cgtgtcctcttcaatcgcagcattgaagaa 76
            ||||| |||||||||| |||||||||||||
Sbjct: 1072 cgtgttctcttcaatcacagcattgaagaa 1043
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>dbj|AK072982.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149I22, full
           insert sequence
          Length = 1146

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 91/106 (85%)
 Strand = Plus / Minus

                                                                       
Query: 380 ggcgtcgcgaaggcgaaatgcagctccttggcaaccactgttgcttcgctgactggcttc 439
           |||||||| || ||||||||| ||||  | |||||||| ||||||||||| ||| | || 
Sbjct: 661 ggcgtcgcaaacgcgaaatgctgctctctcgcaaccaccgttgcttcgctaacttgtttt 602

                                                         
Query: 440 gacacaaggaggagctgcctcaggtcgctgtggttcaccttgcaca 485
           ||||| ||||| ||| |||||||||| |||||||||||||||||||
Sbjct: 601 gacactaggagcagcggcctcaggtcactgtggttcaccttgcaca 556



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 47   cgtgtcctcttcaatcgcagcattgaagaa 76
            ||||| |||||||||| |||||||||||||
Sbjct: 1072 cgtgttctcttcaatcacagcattgaagaa 1043
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                            
Query: 421      tgcttcgctgactggcttcgacacaaggaggagctgcctcaggtcgctgtggttcacctt 480
                ||||||||| ||| | || ||||| ||||| ||| |||||||||| ||||||||||||||
Sbjct: 22358292 tgcttcgctaacttgttttgacactaggagcagcggcctcaggtcactgtggttcacctt 22358351

                     
Query: 481      gcaca 485
                |||||
Sbjct: 22358352 gcaca 22358356



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 47       cgtgtcctcttcaatcgcagcattgaagaa 76
                ||||| |||||||||| |||||||||||||
Sbjct: 22357722 cgtgttctcttcaatcacagcattgaagaa 22357751
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>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0567H04
          Length = 181420

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                          
Query: 421    tgcttcgctgactggcttcgacacaaggaggagctgcctcaggtcgctgtggttcacctt 480
              ||||||||| ||| | || ||||| ||||| ||| |||||||||| ||||||||||||||
Sbjct: 163538 tgcttcgctaacttgttttgacactaggagcagcggcctcaggtcactgtggttcacctt 163597

                   
Query: 481    gcaca 485
              |||||
Sbjct: 163598 gcaca 163602



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 47     cgtgtcctcttcaatcgcagcattgaagaa 76
              ||||| |||||||||| |||||||||||||
Sbjct: 162968 cgtgttctcttcaatcacagcattgaagaa 162997
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>dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0406F06
          Length = 144533

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                         
Query: 421   tgcttcgctgactggcttcgacacaaggaggagctgcctcaggtcgctgtggttcacctt 480
             ||||||||| ||| | || ||||| ||||| ||| |||||||||| ||||||||||||||
Sbjct: 19359 tgcttcgctaacttgttttgacactaggagcagcggcctcaggtcactgtggttcacctt 19418

                  
Query: 481   gcaca 485
             |||||
Sbjct: 19419 gcaca 19423



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 47    cgtgtcctcttcaatcgcagcattgaagaa 76
             ||||| |||||||||| |||||||||||||
Sbjct: 18789 cgtgttctcttcaatcacagcattgaagaa 18818
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>emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H06,
              complete sequence
          Length = 143730

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 345    cgtcttcttcctcgccgtcagcggaggcc 373
              |||||||||||||||||||  ||||||||
Sbjct: 121537 cgtcttcttcctcgccgtcgccggaggcc 121565
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>ref|NM_138885.1| Rattus norvegicus golgi autoantigen, golgin subfamily b,
           macrogolgin 1 (Golgb1), mRNA
          Length = 10170

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 440 gacacaaggaggagctgcctc 460
           |||||||||||||||||||||
Sbjct: 633 gacacaaggaggagctgcctc 653
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 345    cgtcttcttcctcgccgtcagcggaggcc 373
              |||||||||||||||||||  ||||||||
Sbjct: 590570 cgtcttcttcctcgccgtcgccggaggcc 590598



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 345     cgtcttcttcctcgccgtca 364
               ||||||||||||||||||||
Sbjct: 5472101 cgtcttcttcctcgccgtca 5472082



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 5       ttacatataagttacactat 24
               ||||||||||||||||||||
Sbjct: 4671907 ttacatataagttacactat 4671888
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>dbj|AK070186.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045L10, full
           insert sequence
          Length = 908

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 345 cgtcttcttcctcgccgtcagcggaggcc 373
           |||||||||||||||||||  ||||||||
Sbjct: 55  cgtcttcttcctcgccgtcgccggaggcc 83
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>emb|AL442118.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0201G08, complete
             sequence
          Length = 121821

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 345   cgtcttcttcctcgccgtcagcggaggcc 373
             |||||||||||||||||||  ||||||||
Sbjct: 65723 cgtcttcttcctcgccgtcgccggaggcc 65751
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>dbj|D25543.1|RATGCP60 Rattus norvegicus mRNA for novel golgi-associated protein GCP360,
           complete cds
          Length = 10170

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 440 gacacaaggaggagctgcctc 460
           |||||||||||||||||||||
Sbjct: 633 gacacaaggaggagctgcctc 653
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>gb|AC137003.3| Oryza sativa (japonica cultivar-group) Chromosome 5 BAC clone
             OSJNBb0069G11, complete sequence
          Length = 174844

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     ttacatataagttacactat 24
             ||||||||||||||||||||
Sbjct: 98833 ttacatataagttacactat 98852
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 5       ttacatataagttacactat 24
               ||||||||||||||||||||
Sbjct: 4422009 ttacatataagttacactat 4421990
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>ref|XM_446202.1| Candida glabrata CBS138, CAGL0F05335g partial mRNA
          Length = 2535

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 344 tcgtcttcttcctcgccgtc 363
           ||||||||||||||||||||
Sbjct: 137 tcgtcttcttcctcgccgtc 118
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>emb|AL135786.17| Human DNA sequence from clone RP11-12D24 on chromosome 9p23-24.3
             Contains the RLN1 gene for relaxin 1(H1) (RLXH1),the RLN2
             gene for relaxin 2 (H2) (RLXH2), a  high-mobility group
             nucleosomal binding domain 2 (HMGN2) pseudogene, a  novel
             pseudogene, the gene for uncharacterized hematopoietic
             stem/progenitor cells protein (MDS030), a novel pseudogene
             (FLJ39176) and four CpG islands, complete sequence
          Length = 156592

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    ttacatacacagaaataaaa 43
             ||||||||||||||||||||
Sbjct: 42189 ttacatacacagaaataaaa 42208
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>gb|AC016919.15| Homo sapiens 3 BAC RP11-220J13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165714

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     attacatacacagaaataaa 42
              ||||||||||||||||||||
Sbjct: 118565 attacatacacagaaataaa 118584
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>emb|CR380952.1| Candida glabrata strain CBS138 chromosome F complete sequence
          Length = 927101

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 344    tcgtcttcttcctcgccgtc 363
              ||||||||||||||||||||
Sbjct: 540029 tcgtcttcttcctcgccgtc 540048
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>emb|AL663013.4|OSJN00214 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06,
             complete sequence
          Length = 129608

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     ttacatataagttacactat 24
             ||||||||||||||||||||
Sbjct: 62040 ttacatataagttacactat 62021
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>gb|DQ025528.1| Rattus norvegicus CXCL16 (Cxcl16) mRNA, complete cds
          Length = 1306

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 339  ggccatcgtcttcttcctcg 358
            ||||||||||||||||||||
Sbjct: 1180 ggccatcgtcttcttcctcg 1199
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>gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0082N20 BAC genomic
             sequence, complete sequence
          Length = 138826

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     ttacatataagttacactat 24
             ||||||||||||||||||||
Sbjct: 80541 ttacatataagttacactat 80522
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>gb|AY083609.1| Schistosoma japonicum MF7 protein mRNA, complete cds
          Length = 821

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 34  agaaataaaacagcgtgtcc 53
           ||||||||||||||||||||
Sbjct: 787 agaaataaaacagcgtgtcc 806
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>gb|AC074105.3| Oryza sativa chromosome 10 clone OSJNBa0030B02, complete sequence
          Length = 146836

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      ttacatataagttacactat 24
              ||||||||||||||||||||
Sbjct: 132826 ttacatataagttacactat 132807
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>gb|AF104934.1|AF104934 Homo sapiens prorelaxin H1 precursor, gene, promoter region and
            partial cds
          Length = 3136

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   ttacatacacagaaataaaa 43
            ||||||||||||||||||||
Sbjct: 2741 ttacatacacagaaataaaa 2722
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>ref|NM_001017478.1| Rattus norvegicus similar to chemokine (C-X-C motif) ligand 16
           (Cxcl16), mRNA
          Length = 1730

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 ggccatcgtcttcttcctcg 358
           ||||||||||||||||||||
Sbjct: 904 ggccatcgtcttcttcctcg 923
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>gb|AC157916.2| Mus musculus chromosome 19, clone RP24-330P23, complete sequence
          Length = 190666

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     tacatacacagaaataaaac 44
              ||||||||||||||||||||
Sbjct: 183930 tacatacacagaaataaaac 183949
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>gb|S82681.1| H1RLX=relaxin H1 {5' region} [human, Genomic, 984 nt]
          Length = 984

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 24  ttacatacacagaaataaaa 43
           ||||||||||||||||||||
Sbjct: 622 ttacatacacagaaataaaa 603
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>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBa0032G08, from Chromosome 3, complete sequence
          Length = 122052

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 5    ttacatataagttacactat 24
            ||||||||||||||||||||
Sbjct: 4488 ttacatataagttacactat 4507
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>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V,
              complete sequence
          Length = 1519138

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     acatacacagaaataaaaca 45
              ||||||||||||||||||||
Sbjct: 688016 acatacacagaaataaaaca 687997
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>gb|AC160393.2| Mus musculus BAC clone RP23-136M3 from chromosome 12, complete sequence
          Length = 215692

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     catacacagaaataaaacag 46
              ||||||||||||||||||||
Sbjct: 158420 catacacagaaataaaacag 158439
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 5        ttacatataagttacactat 24
                ||||||||||||||||||||
Sbjct: 25627990 ttacatataagttacactat 25628009



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 344      tcgtcttcttcctcgccgtc 363
                ||||||||||||||||||||
Sbjct: 23589684 tcgtcttcttcctcgccgtc 23589665
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 5       ttacatataagttacactat 24
               ||||||||||||||||||||
Sbjct: 6621331 ttacatataagttacactat 6621312
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 5       ttacatataagttacactat 24
               ||||||||||||||||||||
Sbjct: 2806050 ttacatataagttacactat 2806031
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 5        ttacatataagttacactat 24
                ||||||||||||||||||||
Sbjct: 11692657 ttacatataagttacactat 11692676
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 5        ttacatataagttacactat 24
                ||||||||||||||||||||
Sbjct: 19114907 ttacatataagttacactat 19114888



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      ttacatataagttacactat 24
              ||||||||||||||||||||
Sbjct: 906464 ttacatataagttacactat 906483
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 5        ttacatataagttacactat 24
                ||||||||||||||||||||
Sbjct: 10482017 ttacatataagttacactat 10482036
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 5       ttacatataagttacactat 24
               ||||||||||||||||||||
Sbjct: 4422124 ttacatataagttacactat 4422105
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 5        ttacatataagttacactat 24
                ||||||||||||||||||||
Sbjct: 17403995 ttacatataagttacactat 17404014



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 5        ttacatataagttacactat 24
                ||||||||||||||||||||
Sbjct: 11560516 ttacatataagttacactat 11560535
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 5        ttacatataagttacactat 24
                ||||||||||||||||||||
Sbjct: 13253226 ttacatataagttacactat 13253245



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 5       ttacatataagttacactat 24
               ||||||||||||||||||||
Sbjct: 9072959 ttacatataagttacactat 9072940
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>gb|BC079312.1| Rattus norvegicus similar to chemokine (C-X-C motif) ligand 16,
           mRNA (cDNA clone MGC:94457 IMAGE:7134808), complete cds
          Length = 1730

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 ggccatcgtcttcttcctcg 358
           ||||||||||||||||||||
Sbjct: 904 ggccatcgtcttcttcctcg 923
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>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0042J17, complete sequence
          Length = 171442

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     ttacatataagttacactat 24
             ||||||||||||||||||||
Sbjct: 27301 ttacatataagttacactat 27282
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>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0499C11
          Length = 151369

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      ttacatataagttacactat 24
              ||||||||||||||||||||
Sbjct: 101966 ttacatataagttacactat 101947
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>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0711F01
          Length = 193091

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      ttacatataagttacactat 24
              ||||||||||||||||||||
Sbjct: 127291 ttacatataagttacactat 127310
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>dbj|AP005534.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0030M21
          Length = 155970

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      ttacatataagttacactat 24
              ||||||||||||||||||||
Sbjct: 143008 ttacatataagttacactat 143027
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 259     cgacagattgacggcgacgc 278
               ||||||||||||||||||||
Sbjct: 8957460 cgacagattgacggcgacgc 8957479
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>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0019F11
          Length = 123673

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     ttacatataagttacactat 24
             ||||||||||||||||||||
Sbjct: 87359 ttacatataagttacactat 87378
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>dbj|AP003793.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0487E11
          Length = 151303

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      ttacatataagttacactat 24
              ||||||||||||||||||||
Sbjct: 125527 ttacatataagttacactat 125546
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>dbj|AP005470.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0043B22
          Length = 158857

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     ttacatataagttacactat 24
             ||||||||||||||||||||
Sbjct: 18392 ttacatataagttacactat 18373
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>dbj|AP005532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBa0010K08
          Length = 184760

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 5    ttacatataagttacactat 24
            ||||||||||||||||||||
Sbjct: 6805 ttacatataagttacactat 6824
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>dbj|AP004999.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0040H05
          Length = 172623

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     ttacatataagttacactat 24
             ||||||||||||||||||||
Sbjct: 15992 ttacatataagttacactat 16011
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>gb|AC137148.14| Mus musculus chromosome 19, clone RP24-210C4, complete sequence
          Length = 168235

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     tacatacacagaaataaaac 44
              ||||||||||||||||||||
Sbjct: 120709 tacatacacagaaataaaac 120690
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 5       ttacatataagttacactat 24
               ||||||||||||||||||||
Sbjct: 2806001 ttacatataagttacactat 2805982
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 5       ttacatataagttacactat 24
               ||||||||||||||||||||
Sbjct: 6687798 ttacatataagttacactat 6687779
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 5        ttacatataagttacactat 24
                ||||||||||||||||||||
Sbjct: 25556166 ttacatataagttacactat 25556185



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 344      tcgtcttcttcctcgccgtc 363
                ||||||||||||||||||||
Sbjct: 23517875 tcgtcttcttcctcgccgtc 23517856
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>emb|AL772425.7|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396_C02 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 157690

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 344    tcgtcttcttcctcgccgtc 363
              ||||||||||||||||||||
Sbjct: 116726 tcgtcttcttcctcgccgtc 116745
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>emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01,
             complete sequence
          Length = 150283

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 345   cgtcttcttcctcgccgtca 364
             ||||||||||||||||||||
Sbjct: 26731 cgtcttcttcctcgccgtca 26712
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>emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa0036L12 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 127003

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     ttacatataagttacactat 24
             ||||||||||||||||||||
Sbjct: 45728 ttacatataagttacactat 45709
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>dbj|AB071600.1| Oryza sativa (japonica cultivar-group) gene for transcription factor
            OsRS2, complete cds, cultivar:Nipponbare
          Length = 6510

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 344  tcgtcttcttcctcgccgtc 363
            ||||||||||||||||||||
Sbjct: 4946 tcgtcttcttcctcgccgtc 4965
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>dbj|AB064519.1| Oryza sativa (japonica cultivar-group) OsRS2 mRNA for transcription
           factor rough sheath 2 like protein, complete cds
          Length = 1512

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 tcgtcttcttcctcgccgtc 363
           ||||||||||||||||||||
Sbjct: 775 tcgtcttcttcctcgccgtc 794


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,908,923
Number of Sequences: 3902068
Number of extensions: 3908923
Number of successful extensions: 78448
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77517
Number of HSP's gapped (non-prelim): 931
length of query: 489
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 467
effective length of database: 17,147,199,772
effective search space: 8007742293524
effective search space used: 8007742293524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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