ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19j02 |
|---|---|
| Clone Library Name | barley_pub |
>RFA1_SCHPO (Q92372) Replication factor-A protein 1 (Single-stranded| DNA-binding protein p68 subunit) Length = 609 Score = 77.0 bits (188), Expect = 5e-14 Identities = 39/112 (34%), Positives = 67/112 (59%), Gaps = 1/112 (0%) Frame = -1 Query: 649 ESGYW-CEGCQKNYEECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADNLDRIRKE 473 + G W CE C K Y+ RYI+ I V D TG+ WL++F+D + I+ +AD L+ + +E Sbjct: 489 QGGSWRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDL-QE 547 Query: 472 EGDDMFQLKLKEATWVPHLFRVSVAQNEYMGEKRQRITVRSESPVDFAAEAR 317 ++ F + EA ++P++F+ Q+ + GE R R TV S + +D+ E++ Sbjct: 548 NDENAFMNCMAEACYMPYIFQCRAKQDNFKGEMRVRYTVMSINQMDWKEESK 599
>RFA1_YEAST (P22336) Replication factor-A protein 1 (RF-A) (Single-stranded| DNA-binding protein) (DNA-binding protein BUF2) (Replication protein A 69 kDa DNA-binding subunit) Length = 621 Score = 68.9 bits (167), Expect = 1e-11 Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Frame = -1 Query: 643 GYW-CEGCQKNYEECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADNLDRIRKEEG 467 G W CE C N + RYI+ I + D T + WL+LF+DQA++++G A+ L + KEE Sbjct: 501 GTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSL-KEED 559 Query: 466 DDMFQLKLKEATWVPHLFRVSVAQNEYMGEKRQRITVRSESPVDFAAEARYQLEEIAR 293 + F + + FR+ ++ Y + R R TV + +++ AEA Y +E+++ Sbjct: 560 PNEFTKITQSIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSK 617
>RFA1_CAEEL (Q19537) Probable replication factor A 73 kDa subunit (RP-A) (RF-A)| (Replication factor-A protein 1) Length = 655 Score = 62.0 bits (149), Expect = 2e-09 Identities = 32/95 (33%), Positives = 52/95 (54%) Frame = -1 Query: 640 YWCEGCQKNYEECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADNLDRIRKEEGDD 461 Y CE C KN + Y+M ++SD TG+ +++ F D A +IVG SA L + +E D Sbjct: 534 YRCEKCNKNMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKIVGKSAAELGELH-DESPD 592 Query: 460 MFQLKLKEATWVPHLFRVSVAQNEYMGEKRQRITV 356 + + +VP ++R+ + Y E RQ++TV Sbjct: 593 EYNAIFERLQFVPKMWRLRCKMDSYNEEVRQKMTV 627
>RFA1_PONPY (Q5R7Q4) Replication protein A 70 kDa DNA-binding subunit (RP-A)| (RF-A) (Replication factor-A protein 1) (p70) Length = 616 Score = 57.4 bits (137), Expect = 4e-08 Identities = 33/116 (28%), Positives = 54/116 (46%) Frame = -1 Query: 640 YWCEGCQKNYEECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADNLDRIRKEEGDD 461 Y CE C + R I+ + ++D W++ F + AE I+G +A L + K++ + Sbjct: 498 YRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGEL-KDKNEQ 556 Query: 460 MFQLKLKEATWVPHLFRVSVAQNEYMGEKRQRITVRSESPVDFAAEARYQLEEIAR 293 F+ + A + +FRV V Y E R + TV PVD+ R + I R Sbjct: 557 AFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRR 612
>RFA1_HUMAN (P27694) Replication protein A 70 kDa DNA-binding subunit (RP-A)| (RF-A) (Replication factor-A protein 1) (Single-stranded DNA-binding protein) (p70) Length = 616 Score = 57.4 bits (137), Expect = 4e-08 Identities = 33/116 (28%), Positives = 54/116 (46%) Frame = -1 Query: 640 YWCEGCQKNYEECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADNLDRIRKEEGDD 461 Y CE C + R I+ + ++D W++ F + AE I+G +A L + K++ + Sbjct: 498 YRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGEL-KDKNEQ 556 Query: 460 MFQLKLKEATWVPHLFRVSVAQNEYMGEKRQRITVRSESPVDFAAEARYQLEEIAR 293 F+ + A + +FRV V Y E R + TV PVD+ R + I R Sbjct: 557 AFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRR 612
>RFA1_MOUSE (Q8VEE4) Replication protein A 70 kDa DNA-binding subunit (RP-A)| (RF-A) (Replication factor-A protein 1) (p70) Length = 623 Score = 55.1 bits (131), Expect = 2e-07 Identities = 32/116 (27%), Positives = 52/116 (44%) Frame = -1 Query: 640 YWCEGCQKNYEECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADNLDRIRKEEGDD 461 Y CE C + + R I+ ++D W++ F + AE I+G + L + KE+ + Sbjct: 507 YRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLGEL-KEKNEQ 565 Query: 460 MFQLKLKEATWVPHLFRVSVAQNEYMGEKRQRITVRSESPVDFAAEARYQLEEIAR 293 F+ + A + FR+ V Y E R + TV PVDF R + I + Sbjct: 566 AFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDFRDYGRRLIANIRK 621
>RFA1_XENTR (Q5FW17) Replication protein A 70 kDa DNA-binding subunit (RP-A)| (RF-A) (Replication factor-A protein 1) (p70) Length = 609 Score = 53.5 bits (127), Expect = 5e-07 Identities = 30/117 (25%), Positives = 53/117 (45%) Frame = -1 Query: 634 CEGCQKNYEECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADNLDRIRKEEGDDMF 455 CE C K + R I+ ++D W++ F + AE I+G +A L + KE+ + + Sbjct: 491 CEKCDKEFPNYKYRLILSANIADFGENQWITCFQESAESILGQNATYLGEL-KEKNEQAY 549 Query: 454 QLKLKEATWVPHLFRVSVAQNEYMGEKRQRITVRSESPVDFAAEARYQLEEIARLTS 284 + A + + FR+ V Y E R + T PVD +R + I ++ + Sbjct: 550 DEVFQNANFRSYTFRIRVKLETYNDESRIKATAMDVKPVDHKEYSRRLIMNIRKMAA 606
>RFA1_CHICK (Q5ZJJ2) Replication protein A 70 kDa DNA-binding subunit (RP-A)| (RF-A) (Replication factor-A protein 1) (p70) Length = 614 Score = 53.1 bits (126), Expect = 7e-07 Identities = 28/116 (24%), Positives = 56/116 (48%) Frame = -1 Query: 640 YWCEGCQKNYEECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADNLDRIRKEEGDD 461 Y CE C + + R ++++ ++D W++ F + AE I+G SA L + K++ + Sbjct: 495 YRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLGEL-KDKNEQ 553 Query: 460 MFQLKLKEATWVPHLFRVSVAQNEYMGEKRQRITVRSESPVDFAAEARYQLEEIAR 293 F+ + A + + F++ V Y E R + T PV++ ++ + I R Sbjct: 554 AFEEVFQNANFNTYEFKIRVKLETYNDESRIKATALDVKPVNYREYSKRLIASIRR 609
>RFA1_XENLA (Q01588) Replication protein A 70 kDa DNA-binding subunit (RP-A)| (RF-A) (Replication factor-A protein 1) (Single-stranded DNA-binding protein) (p70) Length = 609 Score = 51.6 bits (122), Expect = 2e-06 Identities = 30/117 (25%), Positives = 52/117 (44%) Frame = -1 Query: 634 CEGCQKNYEECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADNLDRIRKEEGDDMF 455 CE C K + R I+ ++D W++ F + AE I+G +A L + KE+ + + Sbjct: 491 CEKCNKEFPNFKYRLILSANIADFGENQWITCFQESAESILGQNATYLGEL-KEKNEQAY 549 Query: 454 QLKLKEATWVPHLFRVSVAQNEYMGEKRQRITVRSESPVDFAAEARYQLEEIARLTS 284 + A + + FR V Y E R + T PVD +R + I ++ + Sbjct: 550 DEVFQNANFRSYTFRARVKLETYNDESRIKATAVDVKPVDHKEYSRRLIMNIRKMAT 606
>RFA1_BRARE (Q6NY74) Replication protein A 70 kDa DNA-binding subunit (RP-A)| (RF-A) (Replication factor-A protein 1) (p70) Length = 601 Score = 50.8 bits (120), Expect = 4e-06 Identities = 29/117 (24%), Positives = 55/117 (47%) Frame = -1 Query: 634 CEGCQKNYEECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADNLDRIRKEEGDDMF 455 CE C K + + R ++ ++D W++ F D AE ++G ++ L ++ K+ + F Sbjct: 485 CEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDTAETLLGQNSSYLGQL-KDTNEAAF 543 Query: 454 QLKLKEATWVPHLFRVSVAQNEYMGEKRQRITVRSESPVDFAAEARYQLEEIARLTS 284 + A + +FR V Y E R ++TV PVD ++ + I +L + Sbjct: 544 DEVFQHANFNTFVFRNRVKLETYNDESRIKVTVVDAKPVDHREYSKRLIINIRKLAA 600
>RFA1_DROME (Q24492) Replication protein A 70 kDa DNA-binding subunit (RP-A)| (RF-A) (Replication factor-A protein 1) (Single-stranded DNA-binding protein) (DmRPA1) (p70) Length = 603 Score = 49.3 bits (116), Expect = 1e-05 Identities = 25/116 (21%), Positives = 55/116 (47%) Frame = -1 Query: 634 CEGCQKNYEECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADNLDRIRKEEGDDMF 455 CE C + R ++ + + D T W+S FN+ E+++G ++ + + + Sbjct: 483 CEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEALENDPAKAE 542 Query: 454 QLKLKEATWVPHLFRVSVAQNEYMGEKRQRITVRSESPVDFAAEARYQLEEIARLT 287 Q+ + H+F++ Y R ++TV+S +P++ ++ L+E+ LT Sbjct: 543 QI-FSALNFTSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHLLKELQELT 597
>RFA1_CRIFA (Q23696) Replication factor A 51 kDa subunit (RP-A) (RF-A)| (Replication factor-A protein 1) (Single-stranded DNA-binding protein P51 subunit) Length = 467 Score = 40.0 bits (92), Expect = 0.006 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 5/96 (5%) Frame = -1 Query: 634 CEGCQKNYEECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADNLDRIRKEEGDDMF 455 CE C RY++ I+V+D + WL+LFN+ G A L R +E D ++ Sbjct: 332 CEKCDATVVPTQ-RYLVSIQVTDNVSQVWLTLFNEAGVEFFGMEASELKRRAQE--DPLY 388 Query: 454 QLKLKEATW-VPHLFRVSVAQ----NEYMGEKRQRI 362 KL +A P + R+ V + N GE+ R+ Sbjct: 389 IAKLAQARMNRPVVMRLRVKEETNANAMTGEESDRL 424
>Y1794_HAEDU (Q7VKS7) UPF0301 protein HD_1794| Length = 186 Score = 30.4 bits (67), Expect = 4.9 Identities = 19/66 (28%), Positives = 29/66 (43%) Frame = -1 Query: 505 SADNLDRIRKEEGDDMFQLKLKEATWVPHLFRVSVAQNEYMGEKRQRITVRSESPVDFAA 326 S D LD + + F + L +TW PH +AQN ++ + T+ S +D Sbjct: 109 SGDVLDSFGTQTAPEKFIVCLGCSTWKPHQLEQEIAQNYWLLSEANNQTLFETSYLDRWV 168 Query: 325 EARYQL 308 EA L Sbjct: 169 EANEML 174
>TBP_METTH (O27664) TATA-box-binding protein (TATA-box factor) (TATA| sequence-binding protein) (TBP) (Box A-binding protein) (BAP) Length = 181 Score = 30.4 bits (67), Expect = 4.9 Identities = 20/51 (39%), Positives = 26/51 (50%) Frame = +2 Query: 359 GDPLPLLAHVLVLRNADTEQVGNPGGFLQLELEHVIALLFSDPIKIICTAA 511 G PL L A L L N + E PG +L+ V+ LLF K++CT A Sbjct: 109 GKPLNLEAVALGLENTEYEPEQFPGLVYRLDDPKVVLLLFGSG-KVVCTGA 158
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 29.6 bits (65), Expect = 8.4 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = -2 Query: 306 RRSPGSPPARRCKRRMPAPLKEISKFTAPCWEKRRCKIMP 187 RRSP PPARR RR P+P + +P +RR P Sbjct: 541 RRSPSPPPARR--RRSPSPPPPPRRRRSPSLPRRRSPSPP 578 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,266,832 Number of Sequences: 219361 Number of extensions: 2025924 Number of successful extensions: 5996 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5607 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5986 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6370891296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
