ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19i18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ133278.1|HVU133278 Hordeum vulgare mRNA for hordeum vulgar... 1055 0.0
2emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H 690 0.0
3dbj|AK104884.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 2e-68
4dbj|AK070329.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 2e-68
5dbj|AK059501.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 2e-68
6gb|BT018842.1| Zea mays clone EL01N0553E10.d mRNA sequence 238 2e-59
7gb|AY109358.1| Zea mays CL2088_1 mRNA sequence 230 4e-57
8gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome... 161 3e-36
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
10ref|NM_106289.3| Arabidopsis thaliana dolichyl-diphosphooligosac... 42 1.9
11gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
12gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome 42 1.9
13gb|AF083780.1| Arabidopsis thaliana clone sps806 unknown mRNA 42 1.9
14gb|AC126786.22| Medicago truncatula clone mth2-8c2, complete seq... 42 1.9
15emb|X68197.1|OSTHLP O.sativa mRNA for thaumatin-like protein 42 1.9
16emb|AL645626.10| Mouse DNA sequence from clone RP23-397J5 on chr... 42 1.9
17gb|AY139776.1| Arabidopsis thaliana At1g76400/F15M4_10 mRNA, com... 42 1.9
18gb|AY128779.1| Arabidopsis thaliana putative dolichyl-diphosphoo... 42 1.9
19gb|AC144482.11| Medicago truncatula clone mth2-10p1, complete se... 42 1.9
20gb|AY081297.1| Arabidopsis thaliana putative dolichyl-diphosphoo... 42 1.9
21dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
22dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
23emb|BX814207.1|CNS0AE1U Arabidopsis thaliana Full-length cDNA Co... 42 1.9
24gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BAC F15... 42 1.9
25gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome 42 1.9
26dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
27dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
28dbj|AK099946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
29dbj|AK069182.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
30gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
31gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 42 1.9
32gb|DQ238866.1| Halophage AAJ-2005 isolate HalPHG1, partial genome 42 1.9
33gb|AC150558.1| Drosophila melanogaster clone BACR01N08, complete... 40 7.4
34gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.4
35gb|AC122901.4| Mus musculus BAC clone RP23-40D21 from chromosome... 40 7.4
36emb|CR956386.6| Pig DNA sequence from clone CH242-152A8 on chrom... 40 7.4
37gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.4
38gb|AC093177.1| Drosophila melanogaster, chromosome 2L, region 36... 40 7.4
39gb|AC092398.1|AC092398 Drosophila melanogaster, chromosome 2L, r... 40 7.4
40dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
41gb|AE003651.2| Drosophila melanogaster chromosome 2L, section 60... 40 7.4
42dbj|AP002800.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.4
43gb|U13988.1|PCU13988 Peanut chlorotic streak caulimovirus, compl... 40 7.4
44gb|M33824.1|TRBWRATATB T.brucei WRATat B variant surface glycopr... 40 7.4 
>emb|AJ133278.1|HVU133278 Hordeum vulgare mRNA for hordeum vulgare (barley) ribophorin I,
           partial
          Length = 989

 Score = 1055 bits (532), Expect = 0.0
 Identities = 544/548 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatcggttccaaaatgattacggtgcttatatcaagttacaacggtctactgataacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 taatcggttccaaaatgattacggtgcttatatcaagttacaacggtctactgataacct 907

                                                                       
Query: 61  tagcctcaggaactaggataacgggcctaccaacacaacatctacacacaaagtggagat 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 906 tagcctcaggaactaggataacggggctaccaacacaacatctacacacaaagtggagat 847

                                                                       
Query: 121 gacattcagcctaatcgctaacgatataagatgagaccggactcgctcatatctcgctaa 180
           |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 846 gacattcagcctaatcgctaacgatataagatgagacctgacttgctcatatctcgctaa 787

                                                                       
Query: 181 ggtactctagaagagattcgacctcttgcctcagcgcagcgatcttctgctgctgggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ggtactctagaagagattcgacctcttgcctcagcgcagcgatcttctgctgctgggaag 727

                                                                       
Query: 241 caatccggttttctatgtcttgcccgcgctgcttcttctcgaagctgtcaaccaccgtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 caatccggttttctatgtcttgcccgcgctgcttcttctcgaagctgtcaaccaccgtgg 667

                                                                       
Query: 301 catgcctcgccatgagcttctcctgcatctctctctccttcgcaaccaggtcctctagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 catgcctcgccatgagcttctcctgcatctctctctccttcgcaaccaggtcctctagct 607

                                                                       
Query: 361 ttggccatatcagataagactgaggggatgactgtacagataacaacagtggcttcaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttggccatatcagataagactgaggggatgactgtacagataacaacagtggcttcaact 547

                                                                       
Query: 421 cttttgctaattccttaaactgtgcatcagcggctttacgagttgctttgcatggttttg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 546 cttttgctaattccttaaactgtgcatcagcggctttacgagttgctttgcatgattttg 487

                                                                       
Query: 481 tgtctccagtcctagacaaatcgtgcaatgatatctctagcttatcatgaacagctaagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgtctccagtcctagacaaatcgtgcaatgatatctctagcttatcatgaacagctaagc 427

                   
Query: 541 actgctca 548
           ||||||||
Sbjct: 426 actgctca 419
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>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H
          Length = 59748

 Score =  690 bits (348), Expect = 0.0
 Identities = 357/360 (99%)
 Strand = Plus / Minus

                                                                         
Query: 1     taatcggttccaaaatgattacggtgcttatatcaagttacaacggtctactgataacct 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22354 taatcggttccaaaatgattacggtgcttatatcaagttacaacggtctactgataacct 22295

                                                                         
Query: 61    tagcctcaggaactaggataacgggcctaccaacacaacatctacacacaaagtggagat 120
             ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 22294 tagcctcaggaactaggatgacggggctaccaacacaacatctacacacaaagtggagat 22235

                                                                         
Query: 121   gacattcagcctaatcgctaacgatataagatgagaccggactcgctcatatctcgctaa 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22234 gacattcagcctaatcgctaacgatataagatgagaccggactcgctcatatctcgctaa 22175

                                                                         
Query: 181   ggtactctagaagagattcgacctcttgcctcagcgcagcgatcttctgctgctgggaag 240
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 22174 ggtactctagaagagattcgacctcttgcctgagcgcagcgatcttctgctgctgggaag 22115

                                                                         
Query: 241   caatccggttttctatgtcttgcccgcgctgcttcttctcgaagctgtcaaccaccgtgg 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22114 caatccggttttctatgtcttgcccgcgctgcttcttctcgaagctgtcaaccaccgtgg 22055

                                                                         
Query: 301   catgcctcgccatgagcttctcctgcatctctctctccttcgcaaccaggtcctctagct 360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22054 catgcctcgccatgagcttctcctgcatctctctctccttcgcaaccaggtcctctagct 21995



 Score =  369 bits (186), Expect = 6e-99
 Identities = 189/190 (99%)
 Strand = Plus / Minus

                                                                         
Query: 359   ctttggccatatcagataagactgaggggatgactgtacagataacaacagtggcttcaa 418
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21824 ctttggccatatcagataagactgaggggatgactgtacagataacaacagtggcttcaa 21765

                                                                         
Query: 419   ctcttttgctaattccttaaactgtgcatcagcggctttacgagttgctttgcatggttt 478
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 21764 ctcttttgctaattccttaaactgtgcatcagcggctttacgagttgctttgcatgattt 21705

                                                                         
Query: 479   tgtgtctccagtcctagacaaatcgtgcaatgatatctctagcttatcatgaacagctaa 538
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21704 tgtgtctccagtcctagacaaatcgtgcaatgatatctctagcttatcatgaacagctaa 21645

                       
Query: 539   gcactgctca 548
             ||||||||||
Sbjct: 21644 gcactgctca 21635
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>dbj|AK104884.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-A05, full
           insert sequence
          Length = 886

 Score =  268 bits (135), Expect = 2e-68
 Identities = 255/295 (86%)
 Strand = Plus / Minus

                                                                       
Query: 157 ccggactcgctcatatctcgctaaggtactctagaagagattcgacctcttgcctcagcg 216
           ||||| ||||||| ||||| || | |||||||| |||||||||||||||||||||||| |
Sbjct: 645 ccggattcgctcagatctcactgatgtactctaaaagagattcgacctcttgcctcaggg 586

                                                                       
Query: 217 cagcgatcttctgctgctgggaagcaatccggttttctatgtcttgcccgcgctgcttct 276
           |||| |  ||||||||||||| |||||||| ||| || |  |||||||| |||  |||||
Sbjct: 585 cagcaactttctgctgctgggcagcaatcctgttctccacatcttgccctcgcaacttct 526

                                                                       
Query: 277 tctcgaagctgtcaaccaccgtggcatgcctcgccatgagcttctcctgcatctctctct 336
           | || |||||||||||||| |||| |||||| | ||||||||| ||||||| ||||||||
Sbjct: 525 tttcaaagctgtcaaccacagtggaatgccttgtcatgagcttatcctgcaactctctct 466

                                                                       
Query: 337 ccttcgcaaccaggtcctctagctttggccatatcagataagactgaggggatgactgta 396
           |||| |||||||  ||||||| ||||||||||||| | |||||||||| ||||||||| |
Sbjct: 465 ccttggcaaccaattcctctacctttggccatatctggtaagactgagaggatgactgca 406

                                                                  
Query: 397 cagataacaacagtggcttcaactcttttgctaattccttaaactgtgcatcagc 451
             |||  ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gggatgtcaacaatggcttcaactcttttgctaattccttaaactgtgcatcagc 351
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>dbj|AK070329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048G03, full
            insert sequence
          Length = 2163

 Score =  268 bits (135), Expect = 2e-68
 Identities = 255/295 (86%)
 Strand = Plus / Minus

                                                                        
Query: 157  ccggactcgctcatatctcgctaaggtactctagaagagattcgacctcttgcctcagcg 216
            ||||| ||||||| ||||| || | |||||||| |||||||||||||||||||||||| |
Sbjct: 1921 ccggattcgctcagatctcactgatgtactctaaaagagattcgacctcttgcctcaggg 1862

                                                                        
Query: 217  cagcgatcttctgctgctgggaagcaatccggttttctatgtcttgcccgcgctgcttct 276
            |||| |  ||||||||||||| |||||||| ||| || |  |||||||| |||  |||||
Sbjct: 1861 cagcaactttctgctgctgggcagcaatcctgttctccacatcttgccctcgcaacttct 1802

                                                                        
Query: 277  tctcgaagctgtcaaccaccgtggcatgcctcgccatgagcttctcctgcatctctctct 336
            | || |||||||||||||| |||| |||||| | ||||||||| ||||||| ||||||||
Sbjct: 1801 tttcaaagctgtcaaccacagtggaatgccttgtcatgagcttatcctgcaactctctct 1742

                                                                        
Query: 337  ccttcgcaaccaggtcctctagctttggccatatcagataagactgaggggatgactgta 396
            |||| |||||||  ||||||| ||||||||||||| | |||||||||| ||||||||| |
Sbjct: 1741 ccttggcaaccaattcctctacctttggccatatctggtaagactgagaggatgactgca 1682

                                                                   
Query: 397  cagataacaacagtggcttcaactcttttgctaattccttaaactgtgcatcagc 451
              |||  ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 gggatgtcaacaatggcttcaactcttttgctaattccttaaactgtgcatcagc 1627
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>dbj|AK059501.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A03, full
           insert sequence
          Length = 886

 Score =  268 bits (135), Expect = 2e-68
 Identities = 255/295 (86%)
 Strand = Plus / Minus

                                                                       
Query: 157 ccggactcgctcatatctcgctaaggtactctagaagagattcgacctcttgcctcagcg 216
           ||||| ||||||| ||||| || | |||||||| |||||||||||||||||||||||| |
Sbjct: 645 ccggattcgctcagatctcactgatgtactctaaaagagattcgacctcttgcctcaggg 586

                                                                       
Query: 217 cagcgatcttctgctgctgggaagcaatccggttttctatgtcttgcccgcgctgcttct 276
           |||| |  ||||||||||||| |||||||| ||| || |  |||||||| |||  |||||
Sbjct: 585 cagcaactttctgctgctgggcagcaatcctgttctccacatcttgccctcgcaacttct 526

                                                                       
Query: 277 tctcgaagctgtcaaccaccgtggcatgcctcgccatgagcttctcctgcatctctctct 336
           | || |||||||||||||| |||| |||||| | ||||||||| ||||||| ||||||||
Sbjct: 525 tttcaaagctgtcaaccacagtggaatgccttgtcatgagcttatcctgcaactctctct 466

                                                                       
Query: 337 ccttcgcaaccaggtcctctagctttggccatatcagataagactgaggggatgactgta 396
           |||| |||||||  ||||||| ||||||||||||| | |||||||||| ||||||||| |
Sbjct: 465 ccttggcaaccaattcctctacctttggccatatctggtaagactgagaggatgactgca 406

                                                                  
Query: 397 cagataacaacagtggcttcaactcttttgctaattccttaaactgtgcatcagc 451
             |||  ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gggatgtcaacaatggcttcaactcttttgctaattccttaaactgtgcatcagc 351
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>gb|BT018842.1| Zea mays clone EL01N0553E10.d mRNA sequence
          Length = 2177

 Score =  238 bits (120), Expect = 2e-59
 Identities = 318/384 (82%)
 Strand = Plus / Minus

                                                                        
Query: 165  gctcatatctcgctaaggtactctagaagagattcgacctcttgcctcagcgcagcgatc 224
            ||||| ||||| |||| |||||||| ||||||||| ||||| |||||||| ||||| || 
Sbjct: 1926 gctcaaatctcactaatgtactctaaaagagattcaacctcctgcctcagggcagcaatt 1867

                                                                        
Query: 225  ttctgctgctgggaagcaatccggttttctatgtcttgcccgcgctgcttcttctcgaag 284
            |||||||||||  ||||||||| ||| ||||  |||||||||||| |||||||||| |||
Sbjct: 1866 ttctgctgctgcaaagcaatcctgttctctacatcttgcccgcgcagcttcttctcaaag 1807

                                                                        
Query: 285  ctgtcaaccaccgtggcatgcctcgccatgagcttctcctgcatctctctctccttcgca 344
            ||||| || || |||| |||||| | ||||||||||||||||||||||||||||||  | 
Sbjct: 1806 ctgtcgacaacggtggaatgccttgtcatgagcttctcctgcatctctctctcctttacg 1747

                                                                        
Query: 345  accaggtcctctagctttggccatatcagataagactgaggggatgactgtacagataac 404
            | || |||||||| ||||||| ||||| |||||||||| || |||||||||| ||    |
Sbjct: 1746 atcaagtcctctacctttggcaatatctgataagactggggagatgactgtagagtcgcc 1687

                                                                        
Query: 405  aacagtggcttcaactcttttgctaattccttaaactgtgcatcagcggctttacgagtt 464
            |||||||||||||  ||||| | ||  ||||||||||| |  ||||| |||||||||| |
Sbjct: 1686 aacagtggcttcagatctttcgatagctccttaaactgcgtgtcagcagctttacgagct 1627

                                                                        
Query: 465  gctttgcatggttttgtgtctccagtcctagacaaatcgtgcaatgatatctctagctta 524
            || ||||| |  |   ||||||| ||||||||||||||  |||||||   ||| || |||
Sbjct: 1626 gccttgcaagactgaatgtctcctgtcctagacaaatcccgcaatgaggcctccagttta 1567

                                    
Query: 525  tcatgaacagctaagcactgctca 548
            |||||||| |||||||| ||||||
Sbjct: 1566 tcatgaactgctaagcattgctca 1543
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>gb|AY109358.1| Zea mays CL2088_1 mRNA sequence
          Length = 1615

 Score =  230 bits (116), Expect = 4e-57
 Identities = 317/384 (82%)
 Strand = Plus / Plus

                                                                       
Query: 165 gctcatatctcgctaaggtactctagaagagattcgacctcttgcctcagcgcagcgatc 224
           ||||| ||||| |||| |||||||| ||||||||| ||||| |||||||| ||||| || 
Sbjct: 283 gctcaaatctcactaatgtactctaaaagagattcaacctcctgcctcagggcagcaatt 342

                                                                       
Query: 225 ttctgctgctgggaagcaatccggttttctatgtcttgcccgcgctgcttcttctcgaag 284
           |||||||||||  ||||||||| ||| ||||  |||||||||||| |||||||||| |||
Sbjct: 343 ttctgctgctgcaaagcaatcctgttctctacatcttgcccgcgcagcttcttctcaaag 402

                                                                       
Query: 285 ctgtcaaccaccgtggcatgcctcgccatgagcttctcctgcatctctctctccttcgca 344
           ||||| || || |||| |||||| | ||||||||||||||||||||||||||||||  | 
Sbjct: 403 ctgtcgacaacggtggaatgccttgtcatgagcttctcctgcatctctctctcctttacg 462

                                                                       
Query: 345 accaggtcctctagctttggccatatcagataagactgaggggatgactgtacagataac 404
           | || |||||||| ||||||| ||||| |||||||||| || |||||||||| ||    |
Sbjct: 463 atcaagtcctctacctttggcaatatctgataagactggggagatgactgtagagtcgcc 522

                                                                       
Query: 405 aacagtggcttcaactcttttgctaattccttaaactgtgcatcagcggctttacgagtt 464
           |||||||||||||  ||||| | ||  ||||||||||| |  ||||| |||||||||| |
Sbjct: 523 aacagtggcttcagatctttcgatagctccttaaactgcgtgtcagcagctttacgagct 582

                                                                       
Query: 465 gctttgcatggttttgtgtctccagtcctagacaaatcgtgcaatgatatctctagctta 524
           || ||||| |  |   ||||||| ||||||||||||||  |||| ||   ||| || |||
Sbjct: 583 gccttgcaagactgaatgtctcctgtcctagacaaatcccgcaacgaggcctccagttta 642

                                   
Query: 525 tcatgaacagctaagcactgctca 548
           |||||||| |||||||| ||||||
Sbjct: 643 tcatgaactgctaagcattgctca 666
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>gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
             OJ1057_C01, complete sequence
          Length = 142752

 Score =  161 bits (81), Expect = 3e-36
 Identities = 171/201 (85%)
 Strand = Plus / Minus

                                                                         
Query: 157   ccggactcgctcatatctcgctaaggtactctagaagagattcgacctcttgcctcagcg 216
             ||||| ||||||| ||||| || | |||||||| |||||||||||||||||||||||| |
Sbjct: 84058 ccggattcgctcagatctcactgatgtactctaaaagagattcgacctcttgcctcaggg 83999

                                                                         
Query: 217   cagcgatcttctgctgctgggaagcaatccggttttctatgtcttgcccgcgctgcttct 276
             |||| |  ||||||||||||| |||||||| ||| || |  |||||||| |||  |||||
Sbjct: 83998 cagcaactttctgctgctgggcagcaatcctgttctccacatcttgccctcgcaacttct 83939

                                                                         
Query: 277   tctcgaagctgtcaaccaccgtggcatgcctcgccatgagcttctcctgcatctctctct 336
             | || |||||||||||||| |||| |||||| | ||||||||| ||||||| ||||||||
Sbjct: 83938 tttcaaagctgtcaaccacagtggaatgccttgtcatgagcttatcctgcaactctctct 83879

                                  
Query: 337   ccttcgcaaccaggtcctcta 357
             |||| |||||||  |||||||
Sbjct: 83878 ccttggcaaccaattcctcta 83858



 Score =  113 bits (57), Expect = 6e-22
 Identities = 84/93 (90%)
 Strand = Plus / Minus

                                                                         
Query: 359   ctttggccatatcagataagactgaggggatgactgtacagataacaacagtggcttcaa 418
             ||||||||||||| | |||||||||| ||||||||| |  |||  ||||| |||||||||
Sbjct: 83696 ctttggccatatctggtaagactgagaggatgactgcagggatgtcaacaatggcttcaa 83637

                                              
Query: 419   ctcttttgctaattccttaaactgtgcatcagc 451
             |||||||||||||||||||||||||||||||||
Sbjct: 83636 ctcttttgctaattccttaaactgtgcatcagc 83604
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  161 bits (81), Expect = 3e-36
 Identities = 171/201 (85%)
 Strand = Plus / Minus

                                                                            
Query: 157      ccggactcgctcatatctcgctaaggtactctagaagagattcgacctcttgcctcagcg 216
                ||||| ||||||| ||||| || | |||||||| |||||||||||||||||||||||| |
Sbjct: 13400595 ccggattcgctcagatctcactgatgtactctaaaagagattcgacctcttgcctcaggg 13400536

                                                                            
Query: 217      cagcgatcttctgctgctgggaagcaatccggttttctatgtcttgcccgcgctgcttct 276
                |||| |  ||||||||||||| |||||||| ||| || |  |||||||| |||  |||||
Sbjct: 13400535 cagcaactttctgctgctgggcagcaatcctgttctccacatcttgccctcgcaacttct 13400476

                                                                            
Query: 277      tctcgaagctgtcaaccaccgtggcatgcctcgccatgagcttctcctgcatctctctct 336
                | || |||||||||||||| |||| |||||| | ||||||||| ||||||| ||||||||
Sbjct: 13400475 tttcaaagctgtcaaccacagtggaatgccttgtcatgagcttatcctgcaactctctct 13400416

                                     
Query: 337      ccttcgcaaccaggtcctcta 357
                |||| |||||||  |||||||
Sbjct: 13400415 ccttggcaaccaattcctcta 13400395



 Score =  113 bits (57), Expect = 6e-22
 Identities = 84/93 (90%)
 Strand = Plus / Minus

                                                                            
Query: 359      ctttggccatatcagataagactgaggggatgactgtacagataacaacagtggcttcaa 418
                ||||||||||||| | |||||||||| ||||||||| |  |||  ||||| |||||||||
Sbjct: 13400233 ctttggccatatctggtaagactgagaggatgactgcagggatgtcaacaatggcttcaa 13400174

                                                 
Query: 419      ctcttttgctaattccttaaactgtgcatcagc 451
                |||||||||||||||||||||||||||||||||
Sbjct: 13400173 ctcttttgctaattccttaaactgtgcatcagc 13400141
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>ref|NM_106289.3| Arabidopsis thaliana dolichyl-diphosphooligosaccharide-protein
            glycotransferase/ oligosaccharyl transferase AT1G76400
            mRNA, complete cds
          Length = 2364

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 221  gatcttctgctgctgggaagcaatccggttttc 253
            |||||| |||||||| ||||| |||||||||||
Sbjct: 1829 gatcttttgctgctgagaagcgatccggttttc 1797
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>gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome 12 clone OSJNBb0003F09,
              complete sequence
          Length = 159600

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 307    tcgccatgagcttctcctgca 327
              |||||||||||||||||||||
Sbjct: 114963 tcgccatgagcttctcctgca 114943



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 307    tcgccatgagcttctcctgca 327
              |||||||||||||||||||||
Sbjct: 105752 tcgccatgagcttctcctgca 105732



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 307   tcgccatgagcttctcctgca 327
             |||||||||||||||||||||
Sbjct: 71929 tcgccatgagcttctcctgca 71909
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>gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome
          Length = 1044459

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 373    gataagactgaggggatgact 393
              |||||||||||||||||||||
Sbjct: 977549 gataagactgaggggatgact 977569
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>gb|AF083780.1| Arabidopsis thaliana clone sps806 unknown mRNA
          Length = 1026

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 221 gatcttctgctgctgggaagcaatccggttttc 253
           |||||| |||||||| ||||| |||||||||||
Sbjct: 853 gatcttttgctgctgagaagcgatccggttttc 821
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>gb|AC126786.22| Medicago truncatula clone mth2-8c2, complete sequence
          Length = 115134

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 309   gccatgagcttctcctgcatctctctctccttcgcaa 345
             ||||| |||||||||||||  ||||||||||| ||||
Sbjct: 39099 gccataagcttctcctgcaaatctctctccttagcaa 39135
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>emb|X68197.1|OSTHLP O.sativa mRNA for thaumatin-like protein
          Length = 681

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 307 tcgccatgagcttctcctgca 327
           |||||||||||||||||||||
Sbjct: 417 tcgccatgagcttctcctgca 437
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>emb|AL645626.10| Mouse DNA sequence from clone RP23-397J5 on chromosome 11 Contains part
             of the Accn1 gene for neuronal amiloride-sensitive cation
             channel 1 (degenerin), a CpG island and a novel gene,
             complete sequence
          Length = 170821

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 317   cttctcctgcatctctctctc 337
             |||||||||||||||||||||
Sbjct: 83271 cttctcctgcatctctctctc 83291
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>gb|AY139776.1| Arabidopsis thaliana At1g76400/F15M4_10 mRNA, complete cds
          Length = 1963

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 221  gatcttctgctgctgggaagcaatccggttttc 253
            |||||| |||||||| ||||| |||||||||||
Sbjct: 1829 gatcttttgctgctgagaagcgatccggttttc 1797
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>gb|AY128779.1| Arabidopsis thaliana putative
            dolichyl-diphosphooligosaccharide-protein
            glycosyltransferase mRNA, complete cds
          Length = 1935

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 221  gatcttctgctgctgggaagcaatccggttttc 253
            |||||| |||||||| ||||| |||||||||||
Sbjct: 1791 gatcttttgctgctgagaagcgatccggttttc 1759
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>gb|AC144482.11| Medicago truncatula clone mth2-10p1, complete sequence
          Length = 121112

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 309   gccatgagcttctcctgcatctctctctccttcgcaa 345
             ||||| |||||||||||||  ||||||||||| ||||
Sbjct: 47539 gccataagcttctcctgcaaatctctctccttagcaa 47575
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>gb|AY081297.1| Arabidopsis thaliana putative
            dolichyl-diphosphooligosaccharide-protein
            glycosyltransferase mRNA, complete cds
          Length = 2031

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 221  gatcttctgctgctgggaagcaatccggttttc 253
            |||||| |||||||| ||||| |||||||||||
Sbjct: 1824 gatcttttgctgctgagaagcgatccggttttc 1792
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 307      tcgccatgagcttctcctgca 327
                |||||||||||||||||||||
Sbjct: 26991769 tcgccatgagcttctcctgca 26991749



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 307      tcgccatgagcttctcctgca 327
                |||||||||||||||||||||
Sbjct: 26982308 tcgccatgagcttctcctgca 26982288



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 307      tcgccatgagcttctcctgca 327
                |||||||||||||||||||||
Sbjct: 26946962 tcgccatgagcttctcctgca 26946942
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 307     tcgccatgagcttctcctgca 327
               |||||||||||||||||||||
Sbjct: 9868913 tcgccatgagcttctcctgca 9868893
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>emb|BX814207.1|CNS0AE1U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB60ZG11 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1986

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 221  gatcttctgctgctgggaagcaatccggttttc 253
            |||||| |||||||| ||||| |||||||||||
Sbjct: 1805 gatcttttgctgctgagaagcgatccggttttc 1773
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>gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BAC F15M4 genomic sequence, complete
             sequence
          Length = 94487

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 221   gatcttctgctgctgggaagcaatccggttttc 253
             |||||| |||||||| ||||| |||||||||||
Sbjct: 46694 gatcttttgctgctgagaagcgatccggttttc 46662
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>gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome
          Length = 1042519

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 373    gataagactgaggggatgact 393
              |||||||||||||||||||||
Sbjct: 974813 gataagactgaggggatgact 974833
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>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0456E06
          Length = 164353

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 307    tcgccatgagcttctcctgca 327
              |||||||||||||||||||||
Sbjct: 159155 tcgccatgagcttctcctgca 159135
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>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0063H02
          Length = 152326

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 307   tcgccatgagcttctcctgca 327
             |||||||||||||||||||||
Sbjct: 65548 tcgccatgagcttctcctgca 65528
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>dbj|AK099946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123C17, full
           insert sequence
          Length = 796

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 307 tcgccatgagcttctcctgca 327
           |||||||||||||||||||||
Sbjct: 471 tcgccatgagcttctcctgca 491
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>dbj|AK069182.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009L15, full
           insert sequence
          Length = 693

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 307 tcgccatgagcttctcctgca 327
           |||||||||||||||||||||
Sbjct: 456 tcgccatgagcttctcctgca 476
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 307      tcgccatgagcttctcctgca 327
                |||||||||||||||||||||
Sbjct: 26918166 tcgccatgagcttctcctgca 26918146



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 307      tcgccatgagcttctcctgca 327
                |||||||||||||||||||||
Sbjct: 26908955 tcgccatgagcttctcctgca 26908935



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 307      tcgccatgagcttctcctgca 327
                |||||||||||||||||||||
Sbjct: 26875132 tcgccatgagcttctcctgca 26875112
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 399    gataacaacagtggcttcaac 419
              |||||||||||||||||||||
Sbjct: 658695 gataacaacagtggcttcaac 658675
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>gb|DQ238866.1| Halophage AAJ-2005 isolate HalPHG1, partial genome
          Length = 35372

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 272  cttcttctcgaagctgtcaaccacc 296
            |||||||||||||| ||||||||||
Sbjct: 8012 cttcttctcgaagcggtcaaccacc 8036
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>gb|AC150558.1| Drosophila melanogaster clone BACR01N08, complete sequence
          Length = 174139

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    ttctgctgctgggaagcaat 244
              ||||||||||||||||||||
Sbjct: 101555 ttctgctgctgggaagcaat 101536
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 319     tctcctgcatctctctctcc 338
               ||||||||||||||||||||
Sbjct: 6401758 tctcctgcatctctctctcc 6401777
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>gb|AC122901.4| Mus musculus BAC clone RP23-40D21 from chromosome 10, complete sequence
          Length = 207598

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 320    ctcctgcatctctctctcct 339
              ||||||||||||||||||||
Sbjct: 168154 ctcctgcatctctctctcct 168173
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>emb|CR956386.6| Pig DNA sequence from clone CH242-152A8 on chromosome 17, complete
              sequence
          Length = 197576

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 460    gagttgctttgcatggttttgtgt 483
              |||||||||||||||| |||||||
Sbjct: 183727 gagttgctttgcatgggtttgtgt 183704
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>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09,
             complete sequence
          Length = 146568

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   tctcctgcatctctctctcc 338
             ||||||||||||||||||||
Sbjct: 81884 tctcctgcatctctctctcc 81903
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>gb|AC093177.1| Drosophila melanogaster, chromosome 2L, region 36A-36B, BAC clone
              BACR33A07, complete sequence
          Length = 174726

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    ttctgctgctgggaagcaat 244
              ||||||||||||||||||||
Sbjct: 130997 ttctgctgctgggaagcaat 131016
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>gb|AC092398.1|AC092398 Drosophila melanogaster, chromosome 2L, region 36X-36X, BAC clone
              BACR03G19, complete sequence
          Length = 165839

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    ttctgctgctgggaagcaat 244
              ||||||||||||||||||||
Sbjct: 101555 ttctgctgctgggaagcaat 101536
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 319     tctcctgcatctctctctcc 338
               ||||||||||||||||||||
Sbjct: 6400971 tctcctgcatctctctctcc 6400990
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>gb|AE003651.2| Drosophila melanogaster chromosome 2L, section 60 of 83 of the complete
             sequence
          Length = 254646

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   ttctgctgctgggaagcaat 244
             ||||||||||||||||||||
Sbjct: 28395 ttctgctgctgggaagcaat 28376
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>dbj|AP002800.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-832A4, complete
              sequence
          Length = 215441

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     gcctaccaacacaacatcta 104
              ||||||||||||||||||||
Sbjct: 208554 gcctaccaacacaacatcta 208573
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>gb|U13988.1|PCU13988 Peanut chlorotic streak caulimovirus, complete genome
          Length = 8174

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 420  tcttttgctaattccttaaa 439
            ||||||||||||||||||||
Sbjct: 3891 tcttttgctaattccttaaa 3872
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>gb|M33824.1|TRBWRATATB T.brucei WRATat B variant surface glycoprotein mRNA, complete cds
          Length = 1585

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 320  ctcctgcatctctctctcct 339
            ||||||||||||||||||||
Sbjct: 1424 ctcctgcatctctctctcct 1405


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,408,051
Number of Sequences: 3902068
Number of extensions: 4408051
Number of successful extensions: 92040
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91819
Number of HSP's gapped (non-prelim): 218
length of query: 548
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 525
effective length of database: 17,143,297,704
effective search space: 9000231294600
effective search space used: 9000231294600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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