>DNAJ_LACJO (Q74IT7) Chaperone protein dnaJ|
          Length = 388

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 411 ISHRLSDVCPLRCNWMKTESRRHPEQCCCCHGNAV 515
           I++  S+VCP  C+    E   HP  C  CHG+ V
Sbjct: 150 ITYTRSEVCPT-CDGSGAEKGTHPITCDKCHGSGV 183

>DEF2_BORPE (Q7VS88) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2) (Polypeptide|
           deformylase 2)
          Length = 170

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 340 PYPFRSMSLIAVC*CKRPGHADGRSVIDYLMSVR 441
           PY F +  L+AVC      H DG+  ++YL +++
Sbjct: 119 PYEFEADGLLAVCVQHEIDHLDGKVFVEYLSNLK 152

>DEF1_BORPA (Q7W1V3) Peptide deformylase 1 (EC 3.5.1.88) (PDF 1) (Polypeptide|
           deformylase 1)
          Length = 170

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 340 PYPFRSMSLIAVC*CKRPGHADGRSVIDYLMSVR 441
           PY F +  L+AVC      H DG+  ++YL +++
Sbjct: 119 PYEFEADGLLAVCVQHEIDHLDGKVFVEYLSNLK 152

>DEF1_BORBR (Q7WQS9) Peptide deformylase 1 (EC 3.5.1.88) (PDF 1) (Polypeptide|
           deformylase 1)
          Length = 170

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 340 PYPFRSMSLIAVC*CKRPGHADGRSVIDYLMSVR 441
           PY F +  L+AVC      H DG+  ++YL +++
Sbjct: 119 PYEFEADGLLAVCVQHEIDHLDGKVFVEYLSNLK 152

>CT165_MOUSE (Q9DA57) Protein C20orf165 homolog|
          Length = 226

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 541 AHPEPPGAATALPWQQQH 488
           AHPEP GA   + W+Q H
Sbjct: 188 AHPEPEGAVEGVQWEQAH 205

>CCDC3_MOUSE (Q9D6Y1) Coiled-coil domain-containing protein 3 precursor|
          Length = 273

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 538 HPEPPGAATALPWQQQHCSGCLLDSVFIQL 449
           HPE PG    LPWQ Q   G L  S  +++
Sbjct: 52  HPEVPGLYNYLPWQYQAGEGGLFYSAEVEM 81


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,884,376
Number of Sequences: 219361
Number of extensions: 1583226
Number of successful extensions: 3906
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3900
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)