ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19i14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009604.1| Triticum aestivum clone wre1n.pk0082.c6:fis, full... 797 0.0
2gb|AY011123.1| Dactylis glomerata mitochondrial processing pepti... 434 e-118
3dbj|AK101856.1| Oryza sativa (japonica cultivar-group) cDNA clon... 317 3e-83
4dbj|AK071930.1| Oryza sativa (japonica cultivar-group) cDNA clon... 317 3e-83
5ref|NM_189667.1| Oryza sativa (japonica cultivar-group), predic... 297 3e-77
6gb|AY108609.1| Zea mays PCO088346 mRNA sequence 141 4e-30
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
8dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
9gb|AC131455.5| Medicago truncatula clone mth1-42h9, complete seq... 46 0.16
10emb|AL049820.23|HSDJ137K2 Human DNA sequence from clone RP1-137K... 46 0.16
11gb|AC102910.13| Mus musculus chromosome 15, clone RP24-280E23, c... 42 2.5
12gb|AC110209.11| Mus musculus chromosome 12, clone RP23-279O18, c... 42 2.5
13ref|XM_844275.1| PREDICTED: Canis familiaris hypothetical protei... 42 2.5
14gb|AC127553.3| Mus musculus BAC clone RP24-553F11 from chromosom... 42 2.5
15ref|XM_758790.1| Theileria parva strain Muguga chromosome 4 hypo... 42 2.5
16gb|AC080073.6| Homo sapiens BAC clone RP11-321C7 from 7, complet... 42 2.5
17emb|AL645617.9| Human DNA sequence from clone RP11-796C22 on chr... 42 2.5
18emb|AL022144.1|HS35C21 Human DNA sequence from clone RP1-35C21 o... 42 2.5
19gb|AC104109.3| Homo sapiens chromosome 5 clone CTD-2410N18, comp... 42 2.5
20ref|NM_065960.2| Caenorhabditis elegans T12A2.8 (T12A2.8) mRNA, ... 42 2.5
21gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complet... 42 2.5
22emb|BX469897.6| Zebrafish DNA sequence from clone CH211-39F22 in... 42 2.5
23emb|CT009504.11| Mouse DNA sequence from clone RP23-149M9 on chr... 42 2.5
24gb|AC110037.13| Mus musculus chromosome 5, clone RP23-257E17, co... 42 2.5
25gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 42 2.5
26gb|AC131190.3| Mus musculus BAC clone RP24-332E15 from chromosom... 40 9.9
27gb|AC165293.2| Mus musculus BAC clone RP23-268A5 from chromosome... 40 9.9
28gb|AC183773.2| Pan troglodytes BAC clone CH251-2N7 from chromoso... 40 9.9
29emb|Z81503.1|CEF14F7 Caenorhabditis elegans Cosmid F14F7, comple... 40 9.9
30gb|AC122496.2| Mus musculus BAC clone RP24-400K16 from 5, comple... 40 9.9
31gb|AE004284.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 9.9
32gb|AF101305.2| Caenorhabditis elegans cosmid C04F5, complete seq... 40 9.9
33gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2... 40 9.9
34emb|AL121908.16|HSDJ719C8 Human DNA sequence from clone RP4-719C... 40 9.9
35emb|CR392344.7| Zebrafish DNA sequence from clone CH211-239D11 i... 40 9.9
36gb|AC165442.1| Mus musculus BAC clone RP23-164P21 from chromosom... 40 9.9
37gb|AF498420.1| Pseudomonas aeruginosa serotype 09 putative O-ant... 40 9.9
38gb|AF498400.1| Pseudomonas aeruginosa serotype 01 putative O-ant... 40 9.9
39dbj|AK095305.1| Homo sapiens cDNA FLJ37986 fis, clone CTONG20111... 40 9.9
40gb|AC090479.6| Mus Musculus Chromosome 18 RP23-363E23, complete ... 40 9.9
41gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, comp... 40 9.9
42emb|BX323090.7| Zebrafish DNA sequence from clone CH211-274B7 in... 40 9.9
43ref|NM_001015794.1| Xenopus tropicalis MGC108402 protein (MGC108... 40 9.9
44gb|BC089743.1| Xenopus tropicalis MGC108402 protein, mRNA (cDNA ... 40 9.9
45gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, comp... 40 9.9
46gb|AF540990.1| Pseudomonas aeruginosa isolate 1-60 O-antigen bio... 40 9.9
47gb|AC073244.13| Homo sapiens 3 BAC RP11-207J1 (Roswell Park Canc... 40 9.9
48gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, com... 40 9.9
49gb|AC115894.6| Mus musculus chromosome 18, clone RP24-443A14, co... 40 9.9
50gb|AC171197.1| Mus musculus BAC clone RP23-216J7 from chromosome... 40 9.9 
>gb|BT009604.1| Triticum aestivum clone wre1n.pk0082.c6:fis, full insert mRNA
            sequence
          Length = 1676

 Score =  797 bits (402), Expect = 0.0
 Identities = 494/524 (94%), Gaps = 8/524 (1%)
 Strand = Plus / Minus

                                                                        
Query: 201  taagatcccaaagttgtcccagtgtagaggagttaatgaccaaaattgtatgcatcttat 260
            ||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||||||
Sbjct: 1441 taagatcccaaagttatcccacagtagaggagttaataaccaaaattgtatgcatcttat 1382

                                                                        
Query: 261  ttttcttgtgaaaaatgtgaccacagatgatcttgaagaaaaa---atatgaacagttaa 317
            |||||||||||||||||||||||     | ||||| |||||||   ||||||||||||||
Sbjct: 1381 ttttcttgtgaaaaatgtgacca-----ggtcttggagaaaaataaatatgaacagttaa 1327

                                                                        
Query: 318  cttgttcagaagcctcctcatttcgagctgaacttgccacgcactgtctcataggctggt 377
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1326 cttgttcagaagcctcctcatttcgagctgaacttgccacgcactgtctcgtaggctggt 1267

                                                                        
Query: 378  acgctgagaacgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagca 437
            ||  ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1266 acattgagaacatttccatgagatgccattgtcaatggtgacgagatgatcttctcagca 1207

                                                                        
Query: 438  acagttgatacatctgccagagttatagcatcaacagcctttagaagctgctccacaggt 497
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1206 acagttgatacatctgccagagttatagcatcaacagccttaagaagctgctccacaggt 1147

                                                                        
Query: 498  ttcctttcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcctttgat 557
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 ttcctttcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcctttgat 1087

                                                                        
Query: 558  tccaggttcctcaagataactgattttgcagatgctttagcacggtccagttgggtttgg 617
            ||||||||| |||||||| ||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 1086 tccaggttcttcaagatagctgattttgcaaatgctttagcacgttccagttgggtttgg 1027

                                                                        
Query: 618  tcaacttgaccaggggtcgcgagggaagtgagttctctggctgccaagtcaataacttta 677
            |||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 tcaacttgaccaggagtagcaagggaagtgagttctctggctgccaagtcaataacttta 967

                                                        
Query: 678  ggaacaaatgctgcatcagtcgatgcatgaattccaaaaatgcc 721
            |||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 966  ggaacaaatgctgcttcagtcgatgtatgaattccaaaaatgcc 923



 Score =  198 bits (100), Expect = 2e-47
 Identities = 169/189 (89%), Gaps = 5/189 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    tattgaatctttattntttcct-tgccccagcactagtttcaacgactttaacc-aaaaa 58
            |||||||||||||||  || || ||||||  |||| |||||| ||||||||||| |||||
Sbjct: 1648 tattgaatctttattcatttctgtgccccgacactggtttcatcgactttaacccaaaaa 1589

                                                                        
Query: 59   agtggaggaacattttgtacacccttccggactgccaccgaaagagggccacccatgcat 118
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||
Sbjct: 1588 agtggaggaacattttgtacacccttccggactgccactgaaagagggccacccatatat 1529

                                                                        
Query: 119  gatttcactgaatttacagtaacatatctcaagagaacaacatcacaccaccaaactcag 178
            ||||||||||||||||||| ||||||||||  |||   |||||||||||| |||| ||||
Sbjct: 1528 gatttcactgaatttacaggaacatatctcttgag---aacatcacaccaacaaattcag 1472

                     
Query: 179  gtggataca 187
            |||||||||
Sbjct: 1471 gtggataca 1463
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>gb|AY011123.1| Dactylis glomerata mitochondrial processing peptidase alpha-chain
            precursor (DGMPP) mRNA, complete cds
          Length = 1799

 Score =  434 bits (219), Expect = e-118
 Identities = 394/451 (87%), Gaps = 1/451 (0%)
 Strand = Plus / Minus

                                                                        
Query: 272  aaaatgtgaccacagatgatcttgaa-gaaaaaatatgaacagttaacttgttcagaagc 330
            |||||||||||| | ||||||||| | ||||| |||| |||||||| ||||| |||| ||
Sbjct: 1659 aaaatgtgaccagaaatgatcttggatgaaaatatatcaacagttatcttgtccagacgc 1600

                                                                        
Query: 331  ctcctcatttcgagctgaacttgccacgcactgtctcataggctggtacgctgagaacgt 390
            || |||||||||||||||||||||| ||||||||||| || ||||||||| |||||||||
Sbjct: 1599 ctactcatttcgagctgaacttgccgcgcactgtctcgtaagctggtacgttgagaacgt 1540

                                                                        
Query: 391  ttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgatacat 450
             |||||| ||||||||||||||||||||||||||||| ||| |||| | || ||||||||
Sbjct: 1539 ctccatgggatgccattgtcaatggtgatgagatgattttctcagcgagagctgatacat 1480

                                                                        
Query: 451  ctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcctttcaccaa 510
            ||  |||||  | | |||| |||  ||| ||||| ||||| |||||||||||||||||||
Sbjct: 1479 ctttcagagaaacaccatcgacaatcttaagaagttgctcaacaggtttcctttcaccaa 1420

                                                                        
Query: 511  atgccaatgcttggcgccccatgtcttcagttgttgatgcctttgattccaggttcctca 570
            |||||||  ||||||||||||| |||||||||| ||||||||||||||||||| |   ||
Sbjct: 1419 atgccaaaacttggcgccccatatcttcagttgctgatgcctttgattccaggcttgcca 1360

                                                                        
Query: 571  agataactgattttgcagatgctttagcacggtccagttgggtttggtcaacttgaccag 630
            ||||  ||||||| ||  ||||||||||||| || |||||||| ||||||||||||||||
Sbjct: 1359 agattgctgatttagctaatgctttagcacgatctagttgggtctggtcaacttgaccag 1300

                                                                        
Query: 631  gggtcgcgagggaagtgagttctctggctgccaagtcaataactttaggaacaaatgctg 690
            | || ||||| |||||||||||||||||||| ||||||||| |||||||| |||||||||
Sbjct: 1299 gagttgcgagtgaagtgagttctctggctgctaagtcaatagctttaggagcaaatgctg 1240

                                           
Query: 691  catcagtcgatgcatgaattccaaaaatgcc 721
            ||||||| |||| ||||||||||||||||||
Sbjct: 1239 catcagtagatgtatgaattccaaaaatgcc 1209
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>dbj|AK101856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069O10, full
            insert sequence
          Length = 2012

 Score =  317 bits (160), Expect = 3e-83
 Identities = 331/388 (85%)
 Strand = Plus / Minus

                                                                        
Query: 334  ctcatttcgagctgaacttgccacgcactgtctcataggctggtacgctgagaacgtttc 393
            ||||||||||||  ||||||||||  ||||  ||||| | ||| ||| | ||||||||||
Sbjct: 1650 ctcatttcgagcgaaacttgccactgactgaatcataagttggcacgttcagaacgtttc 1591

                                                                        
Query: 394  catgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgatacatctg 453
            |||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |  ||| 
Sbjct: 1590 catgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaatgtctt 1531

                                                                        
Query: 454  ccagagttatagcatcaacagcctttagaagctgctccacaggtttcctttcaccaaatg 513
             |||||| | | ||||||||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct: 1530 tcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcctttcaccaaagg 1471

                                                                        
Query: 514  ccaatgcttggcgccccatgtcttcagttgttgatgcctttgattccaggttcctcaaga 573
            |||||  ||| || |||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 1470 ccaatatttgccgtcccatgtcttcagttgctgatgcctttgattccaggttcatcaaga 1411

                                                                        
Query: 574  taactgattttgcagatgctttagcacggtccagttgggtttggtcaacttgaccagggg 633
            |  ||||||| || |  |||||||||||||| ||||| |||||||||||||  ||||| |
Sbjct: 1410 ttgctgatttagctgtcgctttagcacggtcaagttgagtttggtcaacttttccaggag 1351

                                                                        
Query: 634  tcgcgagggaagtgagttctctggctgccaagtcaataactttaggaacaaatgctgcat 693
            | || || |||||||| ||||||| ||||||||||||| | |||||||| ||||||||||
Sbjct: 1350 tggcaagagaagtgagctctctggttgccaagtcaatagccttaggaacgaatgctgcat 1291

                                        
Query: 694  cagtcgatgcatgaattccaaaaatgcc 721
            |||| |||| ||||||||||||||||||
Sbjct: 1290 cagtagatgtatgaattccaaaaatgcc 1263
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>dbj|AK071930.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073N24, full
            insert sequence
          Length = 1991

 Score =  317 bits (160), Expect = 3e-83
 Identities = 331/388 (85%)
 Strand = Plus / Minus

                                                                        
Query: 334  ctcatttcgagctgaacttgccacgcactgtctcataggctggtacgctgagaacgtttc 393
            ||||||||||||  ||||||||||  ||||  ||||| | ||| ||| | ||||||||||
Sbjct: 1644 ctcatttcgagcgaaacttgccactgactgaatcataagttggcacgttcagaacgtttc 1585

                                                                        
Query: 394  catgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgatacatctg 453
            |||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |  ||| 
Sbjct: 1584 catgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaatgtctt 1525

                                                                        
Query: 454  ccagagttatagcatcaacagcctttagaagctgctccacaggtttcctttcaccaaatg 513
             |||||| | | ||||||||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct: 1524 tcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcctttcaccaaagg 1465

                                                                        
Query: 514  ccaatgcttggcgccccatgtcttcagttgttgatgcctttgattccaggttcctcaaga 573
            |||||  ||| || |||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 1464 ccaatatttgccgtcccatgtcttcagttgctgatgcctttgattccaggttcatcaaga 1405

                                                                        
Query: 574  taactgattttgcagatgctttagcacggtccagttgggtttggtcaacttgaccagggg 633
            |  ||||||| || |  |||||||||||||| ||||| |||||||||||||  ||||| |
Sbjct: 1404 ttgctgatttagctgtcgctttagcacggtcaagttgagtttggtcaacttttccaggag 1345

                                                                        
Query: 634  tcgcgagggaagtgagttctctggctgccaagtcaataactttaggaacaaatgctgcat 693
            | || || |||||||| ||||||| ||||||||||||| | |||||||| ||||||||||
Sbjct: 1344 tggcaagagaagtgagctctctggttgccaagtcaatagccttaggaacgaatgctgcat 1285

                                        
Query: 694  cagtcgatgcatgaattccaaaaatgcc 721
            |||| |||| ||||||||||||||||||
Sbjct: 1284 cagtagatgtatgaattccaaaaatgcc 1257
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>ref|NM_189667.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2478

 Score =  297 bits (150), Expect = 3e-77
 Identities = 288/334 (86%)
 Strand = Plus / Minus

                                                                        
Query: 388  cgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgata 447
            |||||||||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |
Sbjct: 2143 cgtttccatgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaa 2084

                                                                        
Query: 448  catctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcctttcac 507
              |||  |||||| | | ||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 2083 tgtctttcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcctttcac 2024

                                                                        
Query: 508  caaatgccaatgcttggcgccccatgtcttcagttgttgatgcctttgattccaggttcc 567
            |||| ||||||  ||| || |||||||||||||||| |||||||||||||||||||||| 
Sbjct: 2023 caaaggccaatatttgccgtcccatgtcttcagttgctgatgcctttgattccaggttca 1964

                                                                        
Query: 568  tcaagataactgattttgcagatgctttagcacggtccagttgggtttggtcaacttgac 627
            |||||||  ||||||| || |  |||||||||||||| ||||| |||||||||||||  |
Sbjct: 1963 tcaagattgctgatttagctgtcgctttagcacggtcaagttgagtttggtcaacttttc 1904

                                                                        
Query: 628  caggggtcgcgagggaagtgagttctctggctgccaagtcaataactttaggaacaaatg 687
            |||| || || || |||||||| ||||||| ||||||||||||| | |||||||| ||||
Sbjct: 1903 caggagtggcaagagaagtgagctctctggttgccaagtcaatagccttaggaacgaatg 1844

                                              
Query: 688  ctgcatcagtcgatgcatgaattccaaaaatgcc 721
            |||||||||| |||| ||||||||||||||||||
Sbjct: 1843 ctgcatcagtagatgtatgaattccaaaaatgcc 1810
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>gb|AY108609.1| Zea mays PCO088346 mRNA sequence
          Length = 2030

 Score =  141 bits (71), Expect = 4e-30
 Identities = 116/131 (88%)
 Strand = Plus / Minus

                                                                        
Query: 591  gctttagcacggtccagttgggtttggtcaacttgaccaggggtcgcgagggaagtgagt 650
            |||||||| |||||||||||| ||||||||||||| ||||| || || ||||||||||| 
Sbjct: 1409 gctttagcgcggtccagttggctttggtcaacttgtccaggagttgcaagggaagtgagc 1350

                                                                        
Query: 651  tctctggctgccaagtcaataactttaggaacaaatgctgcatcagtcgatgcatgaatt 710
            ||||||||||| | ||||||| ||||||||||||||| ||||||||| |||| ||| |||
Sbjct: 1349 tctctggctgctaggtcaatagctttaggaacaaatgatgcatcagtagatgtatggatt 1290

                       
Query: 711  ccaaaaatgcc 721
            ||||| |||||
Sbjct: 1289 ccaaagatgcc 1279



 Score =  139 bits (70), Expect = 1e-29
 Identities = 151/178 (84%)
 Strand = Plus / Minus

                                                                        
Query: 384  agaacgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagtt 443
            |||||||||||||||||||||||||||||||| ||||| ||||||||  |||||||||  
Sbjct: 1616 agaacgtttccatgagatgccattgtcaatggggatgaaatgatcttttcagcaacagac 1557

                                                                        
Query: 444  gatacatctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcctt 503
            | || ||||  || ||| | | |||| |||||||| ||||| |||||  |||||||||||
Sbjct: 1556 gttatatctttcatagtaacaccatctacagccttgagaaggtgctcagcaggtttcctt 1497

                                                                      
Query: 504  tcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcctttgattcca 561
            ||||||||||||||  |||||||||||||||| || |||   ||||||| ||||||||
Sbjct: 1496 tcaccaaatgccaaaacttggcgccccatgtcctctgttagcgatgcctgtgattcca 1439
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                           
Query: 388     cgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgata 447
               |||||||||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |
Sbjct: 4895375 cgtttccatgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaa 4895316

                                                                      
Query: 448     catctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcct 502
                 |||  |||||| | | ||||||||||||| ||||| ||||| |||||||||||
Sbjct: 4895315 tgtctttcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcct 4895261



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                           
Query: 550     cctttgattccaggttcctcaagataactgattttgcagatgctttagcacggtccagtt 609
               ||||||||||||||||| |||||||  ||||||| || |  |||||||||||||| ||||
Sbjct: 4894248 cctttgattccaggttcatcaagattgctgatttagctgtcgctttagcacggtcaagtt 4894189

                             
Query: 610     gggtttggtcaact 623
               | ||||||||||||
Sbjct: 4894188 gagtttggtcaact 4894175



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                    
Query: 642     gaagtgagttctctggctgccaagtcaataactttaggaacaaatgctgcatc 694
               |||||||| ||||||| ||||||||||||| | |||||||| |||||||||||
Sbjct: 4894079 gaagtgagctctctggttgccaagtcaatagccttaggaacgaatgctgcatc 4894027



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                    
Query: 500     cctttcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcct 552
               |||||||||||| ||||||  ||| || |||||||||||||||| ||||||||
Sbjct: 4894375 cctttcaccaaaggccaatatttgccgtcccatgtcttcagttgctgatgcct 4894323



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 694     cagtcgatgcatgaattccaaaaatgcc 721
               |||| |||| ||||||||||||||||||
Sbjct: 4893752 cagtagatgtatgaattccaaaaatgcc 4893725
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>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0710E05
          Length = 179714

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                          
Query: 388    cgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgata 447
              |||||||||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |
Sbjct: 140024 cgtttccatgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaa 139965

                                                                     
Query: 448    catctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcct 502
                |||  |||||| | | ||||||||||||| ||||| ||||| |||||||||||
Sbjct: 139964 tgtctttcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcct 139910



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                          
Query: 550    cctttgattccaggttcctcaagataactgattttgcagatgctttagcacggtccagtt 609
              ||||||||||||||||| |||||||  ||||||| || |  |||||||||||||| ||||
Sbjct: 138897 cctttgattccaggttcatcaagattgctgatttagctgtcgctttagcacggtcaagtt 138838

                            
Query: 610    gggtttggtcaact 623
              | ||||||||||||
Sbjct: 138837 gagtttggtcaact 138824



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                   
Query: 642    gaagtgagttctctggctgccaagtcaataactttaggaacaaatgctgcatc 694
              |||||||| ||||||| ||||||||||||| | |||||||| |||||||||||
Sbjct: 138728 gaagtgagctctctggttgccaagtcaatagccttaggaacgaatgctgcatc 138676



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                   
Query: 500    cctttcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcct 552
              |||||||||||| ||||||  ||| || |||||||||||||||| ||||||||
Sbjct: 139024 cctttcaccaaaggccaatatttgccgtcccatgtcttcagttgctgatgcct 138972



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 694    cagtcgatgcatgaattccaaaaatgcc 721
              |||| |||| ||||||||||||||||||
Sbjct: 138401 cagtagatgtatgaattccaaaaatgcc 138374
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>gb|AC131455.5| Medicago truncatula clone mth1-42h9, complete sequence
          Length = 96063

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 552  tttgattccaggttcctcaagat 574
            |||||||||||||||||||||||
Sbjct: 9711 tttgattccaggttcctcaagat 9689
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>emb|AL049820.23|HSDJ137K2 Human DNA sequence from clone RP1-137K2 on chromosome 6q25.1-25.3
              Contains part of the gene for BRG1-binding protein ELD/OSA1
              (p250R KIAA1235) (FLJ00253 FLJ22292), a novel gene and two
              CpG islands, complete sequence
          Length = 187507

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 115    gcatgatttcactgaatttacag 137
              |||||||||||||||||||||||
Sbjct: 161069 gcatgatttcactgaatttacag 161091
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>gb|AC102910.13| Mus musculus chromosome 15, clone RP24-280E23, complete sequence
          Length = 179719

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 231   agttaatgaccaaaattgtat 251
             |||||||||||||||||||||
Sbjct: 61917 agttaatgaccaaaattgtat 61937
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>gb|AC110209.11| Mus musculus chromosome 12, clone RP23-279O18, complete sequence
          Length = 177587

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 451   ctgccagagttatagcatcaa 471
             |||||||||||||||||||||
Sbjct: 20594 ctgccagagttatagcatcaa 20614
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>ref|XM_844275.1| PREDICTED: Canis familiaris hypothetical protein LOC607552
           (LOC607552), mRNA
          Length = 879

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 554 tgattccaggttcctcaagat 574
           |||||||||||||||||||||
Sbjct: 243 tgattccaggttcctcaagat 223
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>gb|AC127553.3| Mus musculus BAC clone RP24-553F11 from chromosome 5, complete sequence
          Length = 159693

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 641   ggaagtgagttctctggctgccaag 665
             ||||||||| |||||||||||||||
Sbjct: 48264 ggaagtgagctctctggctgccaag 48240
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>ref|XM_758790.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
           (TP04_0248) partial mRNA
          Length = 1698

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 154 aacaacatcacaccaccaaactcag 178
           |||||| ||||||||||||||||||
Sbjct: 809 aacaacttcacaccaccaaactcag 785
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>gb|AC080073.6| Homo sapiens BAC clone RP11-321C7 from 7, complete sequence
          Length = 57075

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 414   ggtgatgagatgatcttcgcagcaa 438
             ||||||||||||||||| |||||||
Sbjct: 35226 ggtgatgagatgatctttgcagcaa 35202
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>emb|AL645617.9| Human DNA sequence from clone RP11-796C22 on chromosome 10 Contains
             part of the UPF2 gene for UPF2 regulator of nonsense
             transcripts homolog (yeast) (FLJ38872), complete sequence
          Length = 76287

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 414   ggtgatgagatgatcttcgcagcaa 438
             |||||||||||||||| ||||||||
Sbjct: 58397 ggtgatgagatgatctgcgcagcaa 58421
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>emb|AL022144.1|HS35C21 Human DNA sequence from clone RP1-35C21 on chromosome 1q23-24, complete
             sequence
          Length = 91017

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 479   tagaagctgctccacaggttt 499
             |||||||||||||||||||||
Sbjct: 64202 tagaagctgctccacaggttt 64182
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>gb|AC104109.3| Homo sapiens chromosome 5 clone CTD-2410N18, complete sequence
          Length = 164072

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 655   tggctgccaagtcaataactt 675
             |||||||||||||||||||||
Sbjct: 47486 tggctgccaagtcaataactt 47506
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>ref|NM_065960.2| Caenorhabditis elegans T12A2.8 (T12A2.8) mRNA, complete cds
          Length = 2544

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 263 ttcttgtgaaaaatgtgacca 283
           |||||||||||||||||||||
Sbjct: 268 ttcttgtgaaaaatgtgacca 248
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>gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complete sequence
          Length = 87248

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 260   tttttcttgtgaaaaatgtga 280
             |||||||||||||||||||||
Sbjct: 40734 tttttcttgtgaaaaatgtga 40714
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>emb|BX469897.6| Zebrafish DNA sequence from clone CH211-39F22 in linkage group 4,
             complete sequence
          Length = 186500

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 503   ttcaccaaatgccaatgcttg 523
             |||||||||||||||||||||
Sbjct: 35705 ttcaccaaatgccaatgcttg 35685
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>emb|CT009504.11| Mouse DNA sequence from clone RP23-149M9 on chromosome 12, complete
            sequence
          Length = 190345

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 451  ctgccagagttatagcatcaa 471
            |||||||||||||||||||||
Sbjct: 2934 ctgccagagttatagcatcaa 2914
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>gb|AC110037.13| Mus musculus chromosome 5, clone RP23-257E17, complete sequence
          Length = 177428

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 641   ggaagtgagttctctggctgccaag 665
             ||||||||| |||||||||||||||
Sbjct: 40439 ggaagtgagctctctggctgccaag 40463
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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 572     gataactgattttgcagatgcttta 596
               |||||||||||| ||||||||||||
Sbjct: 3318142 gataactgatttcgcagatgcttta 3318118
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>gb|AC131190.3| Mus musculus BAC clone RP24-332E15 from chromosome 5, complete sequence
          Length = 176925

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   tgcatcttatttttcttgtg 270
             ||||||||||||||||||||
Sbjct: 96818 tgcatcttatttttcttgtg 96799
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>gb|AC165293.2| Mus musculus BAC clone RP23-268A5 from chromosome 12, complete sequence
          Length = 179330

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 607   gttgggtttggtcaacttga 626
             ||||||||||||||||||||
Sbjct: 93770 gttgggtttggtcaacttga 93789
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>gb|AC183773.2| Pan troglodytes BAC clone CH251-2N7 from chromosome 7, complete sequence
          Length = 168126

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 414    ggtgatgagatgatcttcgcagca 437
              ||||||||||||||||| ||||||
Sbjct: 123750 ggtgatgagatgatctttgcagca 123773
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>emb|Z81503.1|CEF14F7 Caenorhabditis elegans Cosmid F14F7, complete sequence
          Length = 25468

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  caaaattgtatgcatcttat 260
            ||||||||||||||||||||
Sbjct: 8625 caaaattgtatgcatcttat 8606
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>gb|AC122496.2| Mus musculus BAC clone RP24-400K16 from 5, complete sequence
          Length = 180081

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 652   ctctggctgccaagtcaataactt 675
             |||||||||||||||| |||||||
Sbjct: 33190 ctctggctgccaagtctataactt 33167
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>gb|AE004284.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 192
            of 251 of the complete chromosome
          Length = 10039

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 651  tctctggctgccaagtcaat 670
            ||||||||||||||||||||
Sbjct: 8611 tctctggctgccaagtcaat 8592
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>gb|AF101305.2| Caenorhabditis elegans cosmid C04F5, complete sequence
          Length = 40766

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   aatgaccaaaattgtatgca 254
             ||||||||||||||||||||
Sbjct: 32199 aatgaccaaaattgtatgca 32218
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>gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete
              sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 232    gttaatgaccaaaattgtat 251
              ||||||||||||||||||||
Sbjct: 246428 gttaatgaccaaaattgtat 246409
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>emb|AL121908.16|HSDJ719C8 Human DNA sequence from clone RP4-719C8 on chromosome 20 Contains three
              different 5' ends of the C20orf101 gene and three CpG
              islands, complete sequence
          Length = 150985

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 285    agatgatcttgaagaaaaaa 304
              ||||||||||||||||||||
Sbjct: 139494 agatgatcttgaagaaaaaa 139475
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>emb|CR392344.7| Zebrafish DNA sequence from clone CH211-239D11 in linkage group 20
             Contains the 3' end of the gene for a novel protein
             similar to vertebrate X-ray repair complementing defective
             repair in Chinese hamster cells 5 (double-strand-break
             rejoining; Ku autoantigen, 80kDa) (XRCC5), the gene for a
             novel protein similar to vertebrate SWI/SNF related matrix
             associated actin dependent regulator of chromatin
             subfamily a-like 1 (SMARCAL1), two novel genes and three
             CpG islands, complete sequence
          Length = 150882

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   cacaccaccaaactcaggtg 181
             ||||||||||||||||||||
Sbjct: 20138 cacaccaccaaactcaggtg 20157
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>gb|AC165442.1| Mus musculus BAC clone RP23-164P21 from chromosome 10, complete sequence
          Length = 209583

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 608    ttgggtttggtcaacttgac 627
              ||||||||||||||||||||
Sbjct: 183380 ttgggtttggtcaacttgac 183361
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>gb|AF498420.1| Pseudomonas aeruginosa serotype 09 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 16349

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 399   gatgccattgtcaatggtga 418
             ||||||||||||||||||||
Sbjct: 13177 gatgccattgtcaatggtga 13196
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>gb|AF498400.1| Pseudomonas aeruginosa serotype 01 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 17453

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 399   gatgccattgtcaatggtga 418
             ||||||||||||||||||||
Sbjct: 14281 gatgccattgtcaatggtga 14300
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>dbj|AK095305.1| Homo sapiens cDNA FLJ37986 fis, clone CTONG2011188, highly similar
           to EPHRIN TYPE-B RECEPTOR 1 PRECURSOR (EC 2.7.1.112)
          Length = 2737

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 316 aacttgttcagaagcctcct 335
           ||||||||||||||||||||
Sbjct: 187 aacttgttcagaagcctcct 168
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>gb|AC090479.6| Mus Musculus Chromosome 18 RP23-363E23, complete sequence
          Length = 199409

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    atttcactgaatttacagta 139
              ||||||||||||||||||||
Sbjct: 177713 atttcactgaatttacagta 177694
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>gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, complete sequence
          Length = 166133

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   gaagaaaaaatatgaacagt 314
             ||||||||||||||||||||
Sbjct: 45416 gaagaaaaaatatgaacagt 45435
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>emb|BX323090.7| Zebrafish DNA sequence from clone CH211-274B7 in linkage group 1,
              complete sequence
          Length = 166353

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 251    tgcatcttatttttcttgtgaaaa 274
              |||||||||||||| |||||||||
Sbjct: 150147 tgcatcttattttttttgtgaaaa 150124
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>ref|NM_001015794.1| Xenopus tropicalis MGC108402 protein (MGC108402), mRNA
          Length = 2671

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 702  gcatgaattccaaaaatgcc 721
            ||||||||||||||||||||
Sbjct: 2451 gcatgaattccaaaaatgcc 2470
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>gb|BC089743.1| Xenopus tropicalis MGC108402 protein, mRNA (cDNA clone MGC:108402
            IMAGE:7024353), complete cds
          Length = 2671

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 702  gcatgaattccaaaaatgcc 721
            ||||||||||||||||||||
Sbjct: 2451 gcatgaattccaaaaatgcc 2470
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>gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, complete sequence
          Length = 184142

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   gaagaaaaaatatgaacagt 314
             ||||||||||||||||||||
Sbjct: 89621 gaagaaaaaatatgaacagt 89640
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>gb|AF540990.1| Pseudomonas aeruginosa isolate 1-60 O-antigen biosynthetic locus,
             partial sequence
          Length = 19104

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 399   gatgccattgtcaatggtga 418
             ||||||||||||||||||||
Sbjct: 15929 gatgccattgtcaatggtga 15948
to top
>gb|AC073244.13| Homo sapiens 3 BAC RP11-207J1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 109999

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   aacttgttcagaagcctcct 335
             ||||||||||||||||||||
Sbjct: 91747 aacttgttcagaagcctcct 91766
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>gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, complete sequence
          Length = 203368

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   gaagaaaaaatatgaacagt 314
             ||||||||||||||||||||
Sbjct: 80706 gaagaaaaaatatgaacagt 80725
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>gb|AC115894.6| Mus musculus chromosome 18, clone RP24-443A14, complete sequence
          Length = 185242

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    atttcactgaatttacagta 139
              ||||||||||||||||||||
Sbjct: 128212 atttcactgaatttacagta 128231
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>gb|AC171197.1| Mus musculus BAC clone RP23-216J7 from chromosome 5, complete
            sequence
          Length = 211677

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 251  tgcatcttatttttcttgtg 270
            ||||||||||||||||||||
Sbjct: 9841 tgcatcttatttttcttgtg 9822


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,313,886
Number of Sequences: 3902068
Number of extensions: 7313886
Number of successful extensions: 145616
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145385
Number of HSP's gapped (non-prelim): 226
length of query: 723
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 700
effective length of database: 17,143,297,704
effective search space: 12000308392800
effective search space used: 12000308392800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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