ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19i11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_165508.1| Drosophila melanogaster prickle CG11084-RA, tra... 44 0.28
2gb|AC097445.1| Drosophila melanogaster, chromosome 2R, region 43... 44 0.28
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
4dbj|AP003579.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
5dbj|AP003565.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
6gb|AE003842.4| Drosophila melanogaster chromosome 2R, section 8 ... 44 0.28
7gb|AC006469.1|AC006469 Drosophila melanogaster, chromosome 2R, r... 44 0.28
8gb|AF181631.2| Drosophila melanogaster GH04929 full insert cDNA 42 1.1
9gb|AF352564.2| Pseudorabies virus immediate-early protein IE180 ... 42 1.1
10emb|AL109627.18|HSJ733M16 Human DNA sequence from clone RP4-733M... 42 1.1
11gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.1
12gb|AC023748.4| Drosophila melanogaster X BAC RP98-36F8 (Roswell ... 42 1.1
13ref|NM_132277.2| Drosophila melanogaster Lim kinase CG11354-RA (... 42 1.1
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
15gb|AC023724.5| Drosophila melanogaster X BAC RP98-14B2 (Roswell ... 42 1.1
16dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
17dbj|AK111348.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
18gb|AE003445.2| Drosophila melanogaster chromosome X, section 29 ... 42 1.1
19gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.1
20dbj|AB034690.1| Drosophila melanogaster mRNA for dLim1, complete... 42 1.1
21ref|XM_467132.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.4
22ref|XM_612858.2| PREDICTED: Bos taurus similar to achaete-scute ... 40 4.4
23gb|AC122141.4| Mus musculus BAC clone RP24-271D22 from chromosom... 40 4.4
24emb|AL354920.21| Human DNA sequence from clone RP11-522I20 on ch... 40 4.4
25emb|AJ969065.1| Zea mays mRNA for glycosyltransferase (pglcat8 g... 40 4.4
26emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete ... 40 4.4
27emb|AL162756.2|NMA5Z2491 Neisseria meningitidis serogroup A stra... 40 4.4
28gb|AC092857.17| Rattus norvegicus clone rp32-362k5, complete seq... 40 4.4
29gb|CP000137.1| Rhizobium etli CFN 42 plasmid p42e, complete sequ... 40 4.4
30gb|AC155162.5| Mus musculus BAC clone RP24-421I19 from chromosom... 40 4.4
31dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
32dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
33dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
34ref|XM_216399.3| PREDICTED: Rattus norvegicus procollagen, type ... 40 4.4
35dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
36dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
37dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
38dbj|AP005289.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
39dbj|AK108493.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.4
40emb|BX901888.8| Zebrafish DNA sequence from clone CH211-235J18 i... 40 4.4
41dbj|AK063252.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.4
42gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome 40 4.4
43dbj|AP002886.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 4.4
44emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 40 4.4 
>ref|NM_165508.1| Drosophila melanogaster prickle CG11084-RA, transcript variant A
           (pk), mRNA
          Length = 4244

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 261 gcaggggttgggtgaggagggg 282
           ||||||||||||||||||||||
Sbjct: 369 gcaggggttgggtgaggagggg 348
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>gb|AC097445.1| Drosophila melanogaster, chromosome 2R, region 43A-43B, BAC clone
             BACR12F04, complete sequence
          Length = 197994

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 261   gcaggggttgggtgaggagggg 282
             ||||||||||||||||||||||
Sbjct: 98044 gcaggggttgggtgaggagggg 98065
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 50       tcgtcttcgtcggcgctcggcggcggcggc 79
                ||||| |||| |||||||||||||||||||
Sbjct: 26394023 tcgtcgtcgtgggcgctcggcggcggcggc 26393994



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 60       cggcgctcggcggcggcggc 79
                ||||||||||||||||||||
Sbjct: 27766080 cggcgctcggcggcggcggc 27766099
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>dbj|AP003579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0709F06
          Length = 170964

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 50   tcgtcttcgtcggcgctcggcggcggcggc 79
            ||||| |||| |||||||||||||||||||
Sbjct: 6062 tcgtcgtcgtgggcgctcggcggcggcggc 6033
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>dbj|AP003565.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0085J13
          Length = 130185

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 50    tcgtcttcgtcggcgctcggcggcggcggc 79
             ||||| |||| |||||||||||||||||||
Sbjct: 91750 tcgtcgtcgtgggcgctcggcggcggcggc 91721
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>gb|AE003842.4| Drosophila melanogaster chromosome 2R, section 8 of 73 of the complete
              sequence
          Length = 231065

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 261    gcaggggttgggtgaggagggg 282
              ||||||||||||||||||||||
Sbjct: 132032 gcaggggttgggtgaggagggg 132011
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>gb|AC006469.1|AC006469 Drosophila melanogaster, chromosome 2R, region 43A1-43A2, P1 clones
             DS02730 and DS07472, complete sequence
          Length = 89938

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 261   gcaggggttgggtgaggagggg 282
             ||||||||||||||||||||||
Sbjct: 77942 gcaggggttgggtgaggagggg 77921
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>gb|AF181631.2| Drosophila melanogaster GH04929 full insert cDNA
          Length = 3088

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 59   tcggcgctcggcggcggcggc 79
            |||||||||||||||||||||
Sbjct: 2059 tcggcgctcggcggcggcggc 2039
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>gb|AF352564.2| Pseudorabies virus immediate-early protein IE180 gene, complete cds
          Length = 6281

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 59   tcggcgctcggcggcggcggc 79
            |||||||||||||||||||||
Sbjct: 2039 tcggcgctcggcggcggcggc 2059
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>emb|AL109627.18|HSJ733M16 Human DNA sequence from clone RP4-733M16 on chromosome 1p36.11-36.23
             Contains four novel genes, a novel gene (FLJ33962), a
             novel gene (MGC10731), the 3' end of a novel gene
             (KIAA1332), a  metallothionein family pseudogene and three
             CpG islands, complete sequence
          Length = 120825

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 159   caaaaagaatcgagacaagaa 179
             |||||||||||||||||||||
Sbjct: 43742 caaaaagaatcgagacaagaa 43762
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 59      tcggcgctcggcggcggcggc 79
               |||||||||||||||||||||
Sbjct: 2781299 tcggcgctcggcggcggcggc 2781319
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>gb|AC023748.4| Drosophila melanogaster X BAC RP98-36F8 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 156096

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 59     tcggcgctcggcggcggcggc 79
              |||||||||||||||||||||
Sbjct: 142984 tcggcgctcggcggcggcggc 142964
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>ref|NM_132277.2| Drosophila melanogaster Lim kinase CG11354-RA (Lim1), mRNA
          Length = 3077

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 59   tcggcgctcggcggcggcggc 79
            |||||||||||||||||||||
Sbjct: 2058 tcggcgctcggcggcggcggc 2038
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 59      tcggcgctcggcggcggcggc 79
               |||||||||||||||||||||
Sbjct: 4393346 tcggcgctcggcggcggcggc 4393326



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 56       tcgtcggcgctcggcggcggcggc 79
                ||||||||||||||| ||||||||
Sbjct: 26595009 tcgtcggcgctcggcagcggcggc 26594986
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>gb|AC023724.5| Drosophila melanogaster X BAC RP98-14B2 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 181974

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 59     tcggcgctcggcggcggcggc 79
              |||||||||||||||||||||
Sbjct: 110919 tcggcgctcggcggcggcggc 110899
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>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0544B02
          Length = 156339

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 59    tcggcgctcggcggcggcggc 79
             |||||||||||||||||||||
Sbjct: 76910 tcggcgctcggcggcggcggc 76890
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>dbj|AK111348.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-G04, full
           insert sequence
          Length = 1338

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 59  tcggcgctcggcggcggcggc 79
           |||||||||||||||||||||
Sbjct: 216 tcggcgctcggcggcggcggc 236
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>gb|AE003445.2| Drosophila melanogaster chromosome X, section 29 of 74 of the complete
             sequence
          Length = 334222

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 59    tcggcgctcggcggcggcggc 79
             |||||||||||||||||||||
Sbjct: 43404 tcggcgctcggcggcggcggc 43424
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 46      gctttcgtcttcgtcggcgct 66
               |||||||||||||||||||||
Sbjct: 1675459 gctttcgtcttcgtcggcgct 1675439
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>dbj|AB034690.1| Drosophila melanogaster mRNA for dLim1, complete cds
          Length = 3087

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 59   tcggcgctcggcggcggcggc 79
            |||||||||||||||||||||
Sbjct: 2058 tcggcgctcggcggcggcggc 2038
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>ref|XM_467132.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1210

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 56  tcgtcggcgctcggcggcggcggc 79
           ||||||||||||||| ||||||||
Sbjct: 131 tcgtcggcgctcggcagcggcggc 154
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>ref|XM_612858.2| PREDICTED: Bos taurus similar to achaete-scute complex-like 4
           (LOC540730), mRNA
          Length = 507

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  cggcgctcggcggcggcggc 79
           ||||||||||||||||||||
Sbjct: 131 cggcgctcggcggcggcggc 150
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>gb|AC122141.4| Mus musculus BAC clone RP24-271D22 from chromosome 16, complete
             sequence
          Length = 125982

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 161   aaaagaatcgagacaagaatgctg 184
             |||||||| |||||||||||||||
Sbjct: 24909 aaaagaatggagacaagaatgctg 24886
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>emb|AL354920.21| Human DNA sequence from clone RP11-522I20 on chromosome 9 Contains a
             novel gene, the UBQLN1 gene for ubiquilin 1 (DA41, DSK2,
             XDRP1, PLIC-1), the 3' UTR of the gene for protein kinase
             anchoring protein GKAP42 (FKSG21) and two CpG islands,
             complete sequence
          Length = 168804

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   caggggttgggtgaggaggg 281
             ||||||||||||||||||||
Sbjct: 84653 caggggttgggtgaggaggg 84672
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>emb|AJ969065.1| Zea mays mRNA for glycosyltransferase (pglcat8 gene)
          Length = 1522

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 60 cggcgctcggcggcggcggc 79
          ||||||||||||||||||||
Sbjct: 77 cggcgctcggcggcggcggc 96
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>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    cggcgctcggcggcggcggc 79
             ||||||||||||||||||||
Sbjct: 17162 cggcgctcggcggcggcggc 17143
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>emb|AL162756.2|NMA5Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment
              5/7
          Length = 329861

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     tcggcggcggcggcaaggaa 85
              ||||||||||||||||||||
Sbjct: 263900 tcggcggcggcggcaaggaa 263919
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>gb|AC092857.17| Rattus norvegicus clone rp32-362k5, complete sequence
          Length = 143406

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     cggcgctcggcggcggcggc 79
              ||||||||||||||||||||
Sbjct: 142952 cggcgctcggcggcggcggc 142971
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>gb|CP000137.1| Rhizobium etli CFN 42 plasmid p42e, complete sequence
          Length = 505334

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    ggcggcggcggcaaggaaag 87
             ||||||||||||||||||||
Sbjct: 39161 ggcggcggcggcaaggaaag 39142
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>gb|AC155162.5| Mus musculus BAC clone RP24-421I19 from chromosome 16, complete sequence
          Length = 200912

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 161    aaaagaatcgagacaagaatgctg 184
              |||||||| |||||||||||||||
Sbjct: 157486 aaaagaatggagacaagaatgctg 157463
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 60       cggcgctcggcggcggcggc 79
                ||||||||||||||||||||
Sbjct: 42525042 cggcgctcggcggcggcggc 42525023
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>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0458E05
          Length = 193577

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    cggcgctcggcggcggcggc 79
             ||||||||||||||||||||
Sbjct: 45925 cggcgctcggcggcggcggc 45906
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>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0483G10
          Length = 190721

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     cggcgctcggcggcggcggc 79
              ||||||||||||||||||||
Sbjct: 184380 cggcgctcggcggcggcggc 184361
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>ref|XM_216399.3| PREDICTED: Rattus norvegicus procollagen, type XV (predicted)
            (Col15a1_predicted), mRNA
          Length = 6010

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 60   cggcgctcggcggcggcggc 79
            ||||||||||||||||||||
Sbjct: 1016 cggcgctcggcggcggcggc 997
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>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0519E06
          Length = 170634

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 56     tcgtcggcgctcggcggcggcggc 79
              ||||||||||||||| ||||||||
Sbjct: 137390 tcgtcggcgctcggcagcggcggc 137367
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>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1153E06
          Length = 174588

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     cggcgctcggcggcggcggc 79
              ||||||||||||||||||||
Sbjct: 115335 cggcgctcggcggcggcggc 115354
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>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0710B08
          Length = 186991

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    cggcgctcggcggcggcggc 79
             ||||||||||||||||||||
Sbjct: 68589 cggcgctcggcggcggcggc 68608
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>dbj|AP005289.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1112_F09
          Length = 139371

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 56    tcgtcggcgctcggcggcggcggc 79
             ||||||||||||||| ||||||||
Sbjct: 29170 tcgtcggcgctcggcagcggcggc 29147
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>dbj|AK108493.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G04, full
           insert sequence
          Length = 1210

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 56  tcgtcggcgctcggcggcggcggc 79
           ||||||||||||||| ||||||||
Sbjct: 131 tcgtcggcgctcggcagcggcggc 154
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>emb|BX901888.8| Zebrafish DNA sequence from clone CH211-235J18 in linkage group 20,
             complete sequence
          Length = 49475

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   caagaatgctgttaaagctt 193
             ||||||||||||||||||||
Sbjct: 31934 caagaatgctgttaaagctt 31953
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>dbj|AK063252.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-H05,
          full insert sequence
          Length = 715

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 60 cggcgctcggcggcggcggc 79
          ||||||||||||||||||||
Sbjct: 57 cggcgctcggcggcggcggc 38
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>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     tcggcggcggcggcaaggaa 85
              ||||||||||||||||||||
Sbjct: 997026 tcggcggcggcggcaaggaa 997045
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>dbj|AP002886.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-1133J7, complete
              sequences
          Length = 168406

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     cggcgctcggcggcggcggc 79
              ||||||||||||||||||||
Sbjct: 134000 cggcgctcggcggcggcggc 133981
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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 56     tcgtcggcgctcggcggcggcggc 79
              ||||||||||||||| ||||||||
Sbjct: 280563 tcgtcggcgctcggcagcggcggc 280586


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,490,854
Number of Sequences: 3902068
Number of extensions: 3490854
Number of successful extensions: 299437
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 298523
Number of HSP's gapped (non-prelim): 914
length of query: 335
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 313
effective length of database: 17,147,199,772
effective search space: 5367073528636
effective search space used: 5367073528636
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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