ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19h20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHK_SCHPO (O74770) Probable phosphoketolase (EC 4.1.2.-) 32 1.3
2MATK_CARAB (Q9TKP0) Maturase K (Intron maturase) 31 2.8
3PHK1_ANASP (Q8YWW1) Probable phosphoketolase 1 (EC 4.1.2.-) 31 2.8
4PHK_SYNEL (Q8DJN6) Probable phosphoketolase (EC 4.1.2.-) 31 2.8
5CED11_CAEEL (P34641) Protein ced-11 (Cell death protein 11) 31 2.8
6PHK_PARUW (Q6MFC0) Probable phosphoketolase (EC 4.1.2.-) 30 4.9
7SYY_PSEHT (Q3II62) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosin... 30 4.9
8MATK_MELID (Q8MCP4) Maturase K (Intron maturase) 30 8.3
9AT10D_HUMAN (Q9P241) Probable phospholipid-transporting ATPase V... 30 8.3
10PHK_RHOBA (Q7UH14) Probable phosphoketolase (EC 4.1.2.-) 30 8.3
11PHK_METCA (Q608B0) Probable phosphoketolase (EC 4.1.2.-) 30 8.3
12AT10D_MOUSE (Q8K2X1) Probable phospholipid-transporting ATPase V... 30 8.3

>PHK_SCHPO (O74770) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 825

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 498 PDMLVNSVHGDGCTSSAPPLTAWHFH 575
           PD++V  V GDG   + P  T+WH H
Sbjct: 206 PDLIVTCVVGDGEAETGPTATSWHAH 231



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>MATK_CARAB (Q9TKP0) Maturase K (Intron maturase)|
          Length = 503

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 454 CTSISVSTSGEMASKGRPNMFLFAYYYYIC 365
           C   S ST     SK  P +FLF Y +Y+C
Sbjct: 185 CNWNSFSTPKSTFSKSNPRLFLFLYNFYVC 214



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>PHK1_ANASP (Q8YWW1) Probable phosphoketolase 1 (EC 4.1.2.-)|
          Length = 808

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 498 PDMLVNSVHGDGCTSSAPPLTAWH 569
           PD++V +V GDG   + P  TAWH
Sbjct: 176 PDLIVTAVIGDGEAETGPLATAWH 199



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>PHK_SYNEL (Q8DJN6) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 812

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 498 PDMLVNSVHGDGCTSSAPPLTAWHFH 575
           PD++V +V GDG   +AP  T+WH +
Sbjct: 185 PDLIVAAVVGDGEAETAPLATSWHIN 210



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>CED11_CAEEL (P34641) Protein ced-11 (Cell death protein 11)|
          Length = 1418

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
 Frame = +2

Query: 125  PRPSPLWILCLSCQLRLVYFGGYPRYDSNNDPLHTPSRLKCGN--KHDSLTRNRGALWTS 298
            P P PL I CL C     +   +  + S+ D     +R KC    K  S+ RN    +  
Sbjct: 1037 PLPPPLTIFCLICSACCRFSNSFSGFFSDFDHPDFEARDKCRTTWKFGSIYRNPSVPFKR 1096

Query: 299  IEPPDS----ISLVEFDSSDAKHKVSAN 370
             E  +S    +S+ ++ ++  K K+SAN
Sbjct: 1097 NEFVNSFWRKLSMEQWKNTQQKAKISAN 1124



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>PHK_PARUW (Q6MFC0) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 798

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 498 PDMLVNSVHGDGCTSSAPPLTAWH 569
           PD++V  V GDG   + P  TAWH
Sbjct: 170 PDLIVGCVIGDGEAETGPLATAWH 193



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>SYY_PSEHT (Q3II62) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA|
           ligase) (TyrRS)
          Length = 420

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 429 EVETEIEVQDLIQHQREFVQKLIPDMLVNSVHGDGCTSSAPPLTAWHFHGRTGAL 593
           E+E  IE  D+   Q+   Q ++ + L   VHG+   +SA  +T   F+G+   L
Sbjct: 279 EIEA-IEANDITSQQKPQAQGILAEQLTRFVHGEQGLASAQRITQLLFNGQVQTL 332



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>MATK_MELID (Q8MCP4) Maturase K (Intron maturase)|
          Length = 506

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 445 ISVSTSGEMASKGRPNMFLFAYYYYIC 365
           I+   S    SK  P +FLF Y++Y+C
Sbjct: 191 ITTKKSISTFSKSNPRLFLFLYHFYVC 217



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>AT10D_HUMAN (Q9P241) Probable phospholipid-transporting ATPase VD (EC 3.6.3.1)|
           (ATPVD)
          Length = 1426

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 188 GYPRYDSNNDPLHTPSRLKCGNKHDSLTRNRGAL 289
           GY   DS  DP    SR++C + ++ L+R RG L
Sbjct: 226 GYAEQDSEVDPEKFSSRIECESPNNDLSRFRGFL 259



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>PHK_RHOBA (Q7UH14) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 793

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 498 PDMLVNSVHGDGCTSSAPPLTAWH 569
           PD++V  V GDG   + P  TAWH
Sbjct: 165 PDLIVACVVGDGEAETGPLATAWH 188



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>PHK_METCA (Q608B0) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 811

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 498 PDMLVNSVHGDGCTSSAPPLTAWHFH 575
           PD++V +V GDG   + P  T+WH +
Sbjct: 184 PDLIVAAVVGDGEAETGPLATSWHIN 209



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>AT10D_MOUSE (Q8K2X1) Probable phospholipid-transporting ATPase VD (EC 3.6.3.1)|
           (ATPVD)
          Length = 1416

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 188 GYPRYDSNNDPLHTPSRLKCGNKHDSLTRNRGAL 289
           GY   DS  DP    SR++C + ++ L+R RG L
Sbjct: 226 GYTEQDSEVDPEKFSSRIECESPNNDLSRFRGFL 259


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,369,982
Number of Sequences: 219361
Number of extensions: 2161168
Number of successful extensions: 5459
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5459
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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