ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19h19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MURC_PROMA (Q7VEJ1) UDP-N-acetylmuramate--L-alanine ligase (EC 6... 30 6.4
2CARA_HAEDU (Q7VP66) Carbamoyl-phosphate synthase small chain (EC... 30 8.3

>MURC_PROMA (Q7VEJ1) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 472

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 510 RLEKCSIHMNCSFSVRLKSTPNFLNMWLRDLSNLINVRFR--DLLSFLGSRD 659
           +L+ C++  N        + P F    LRDL N+IN++ R  DLL F+G+ D
Sbjct: 415 KLKSCTLANN-------PNLPIFTCKQLRDLENIINLKTRENDLLLFMGAGD 459



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>CARA_HAEDU (Q7VP66) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 389

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = -1

Query: 620 YIDQVAEVTKPHVEKVRGTLKPYTKRAVHVYGTFLESATTYHRQAQAT--ISDYLHQHEI 447
           Y  Q+  +T PH+       +      ++  G  +      H   +AT  +SDYL QH I
Sbjct: 51  YAKQIVTLTYPHIGNTGTNDEDNESNQIYASGLIIRDLPLLHSNFRATSSLSDYLIQHNI 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,566,561
Number of Sequences: 219361
Number of extensions: 2008614
Number of successful extensions: 5699
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5697
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6314008338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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